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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
irx1	xenopus		brain [+] forebrain,telencephalon,diencephalon,midbrain,hindbrain,midbrain-hindbrain boundary,hypophysis,ventricular zone,pineal gland,optic stalk,cerebellum,fourth ventricle,medulla oblongata,optic tectum,hypothalamus,optic chiasm,suprachiasmatic nucleus,rhombomere,optic tract,rhombic lip,metencephalic artery,metencephalic vein,mesencephalic artery,mesencephalic vein,olfactory bulb,infundibulum,ventral tegmentum,dorsal tegmentum,anterior hypothalamus,posterior hypothalamus,lateral ganglionic eminence,subpallium,medial ganglionic eminence,midbrain tegmentum,eminentia thalami,pallium,pretectum,prethalamus,zona limitans intrathalamica,thalamus,oculomotor motornucleus,dorsal thalamus,trochlear motornucleus,anterior tectum,posterior tectum,accessory olfactory bulb,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,central amygdala,central nucleus of the thalamus,dorsal column nucleus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,external plexiform layer of the olfactory bulb,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,medial amygdala,medial pallium,medial septum,mitral cell,mitral cell layer of the olfactory bulb,nucleus accumbens,nucleus of the diagonal band,pallidum,posterior commissure,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,raphe nucleus,telencephalon septum,solitary tract,striatum,subcommissural organ,subthalamic nucleus,torus semicircularis,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,prosomere,prosomere 4,prosomere 5,prosomere 6,brain ventricle,mammilary region,tuberal region,third ventricle,forebrain-midbrain boundary,ventricular layer of the optic tectum,neuropil of the optic tectum,cell body layer of the optic tectum,radial glial cell,neural stem cell,Mauthner cell,caudal tuberal region,rostral tuberal region,nucleus of the solitary tract,prethalamus basal plate,retromammillary area,nucleus reticularis medialis,nucleus reticularis superior,nucleus reticularis inferior,ventral septum,supraoptoparaventricular region,stria terminalis,anterior entopeduncular region,astrocyte,oligodendrocyte,astrocyte end-foot,melanotrope,adenohypophysis,neurohypophysis,pars distalis,pars nervosa,pars intermedia,dorsal telencephalon,pial cell,pia mater,amygdala,anterior amygdala,anterior entopeduncular nucleus,anterior tectum,astrocyte end-foot,basal ganglion,bed nucleus of the stria terminalis,cell body layer of the optic tectum,central amygdala,dorsal pallidum,dorsal septum,lateral amygdala,lateral septum,medial amygdala,medial septum,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,pallidum,pars nervosa,posterior tectum,radial glial cell,striatum,subthalamic nucleus,telencephalon septum,ventral pallidum,ventral septum,ventricular layer of the optic tectum,Stirnorgan,amygdala,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,neurohypophysis,nucleus of the diagonal band,oligodendrocyte,optic nerve,optic tectum,pallidum,radial glial cell,striatum,telencephalon septum

Too many results?Too few results?

Expression summary for irx1

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Experiment	Species	Images	Stages	Anatomy	Assay
Schlosser G and Ahrens K (2004) Assay Paper	laevis	3 images	NF stage 21 to NF stage 33 and 34	hindbrain, midbrain, midbrain-hindbrain boundary	in situ hybridization
Alarcón P et al. (2009) Assay Paper	laevis	1 image	NF stage 35 and 36	hindbrain	in situ hybridization
Rodríguez-Seguel E et al. (2009) Assay Paper	laevis	3 images	NF stage 14 to NF stage 26	diencephalon, hindbrain, midbrain	in situ hybridization
Harland Lab Assay Harland Lab	tropicalis	2 images	NF stage 28 to NF stage 42	brain, forebrain, hindbrain, midbrain, telencephalon	in situ hybridization
The homeoprotein Xiro1 is required for midbrain-hindbrain boundary formation. Paper	laevis	1 image	NF stage 12 to NF stage 18	midbrain	in situ hybridization
HNF1B controls proximal-intermediate nephron segment identity in vertebrates by regulating Notch signalling components and I... Paper	laevis	1 image	NF stage 33 and 34 to NF stage 35 and 36	brain, hindbrain, midbrain-hindbrain boundary	in situ hybridization
The prepattern transcription factor Irx3 directs nephron segment identity. Paper	laevis	1 image	NF stage 35 and 36	brain	in situ hybridization
Juraver-Geslin HA et al. (2014) Assay Paper	laevis	4 images	NF stage 29 and 30 to NF stage 32	forebrain, prosomere, thalamus	in situ hybridization
An evolutionarily conserved three-dimensional structure in the vertebrate Irx clusters facilitates enhancer sharing and core... Paper	laevis	1 image	NF stage 29 and 30	brain	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 28	hindbrain, midbrain	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 28	midbrain	in situ hybridization
Soeren S Lienkamp	laevis	1 image	NF stage 33 and 34	brain	in situ hybridization
Six1 proteins with human branchio-oto-renal mutations differentially affect cranial gene expression and otic development. Paper	laevis	1 image	NF stage 28 to NF stage 32	brain	in situ hybridization
Xenopus EST library Unigene laevis cDNA library	laevis		NF stage 45 to NF stage 66	brain	cDNA Library

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