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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
lhx5	xenopus		brain [+] forebrain,telencephalon,diencephalon,midbrain,hindbrain,midbrain-hindbrain boundary,hypophysis,ventricular zone,pineal gland,optic stalk,cerebellum,fourth ventricle,medulla oblongata,optic tectum,hypothalamus,optic chiasm,suprachiasmatic nucleus,rhombomere,optic tract,rhombic lip,metencephalic artery,metencephalic vein,mesencephalic artery,mesencephalic vein,olfactory bulb,infundibulum,ventral tegmentum,dorsal tegmentum,anterior hypothalamus,posterior hypothalamus,lateral ganglionic eminence,subpallium,medial ganglionic eminence,midbrain tegmentum,eminentia thalami,pallium,pretectum,prethalamus,zona limitans intrathalamica,thalamus,oculomotor motornucleus,dorsal thalamus,trochlear motornucleus,anterior tectum,posterior tectum,accessory olfactory bulb,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,central amygdala,central nucleus of the thalamus,dorsal column nucleus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,external plexiform layer of the olfactory bulb,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,medial amygdala,medial pallium,medial septum,mitral cell,mitral cell layer of the olfactory bulb,nucleus accumbens,nucleus of the diagonal band,pallidum,posterior commissure,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,raphe nucleus,telencephalon septum,solitary tract,striatum,subcommissural organ,subthalamic nucleus,torus semicircularis,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,prosomere,prosomere 4,prosomere 5,prosomere 6,brain ventricle,mammilary region,tuberal region,third ventricle,forebrain-midbrain boundary,ventricular layer of the optic tectum,neuropil of the optic tectum,cell body layer of the optic tectum,radial glial cell,neural stem cell,Mauthner cell,caudal tuberal region,rostral tuberal region,nucleus of the solitary tract,prethalamus basal plate,retromammillary area,nucleus reticularis medialis,nucleus reticularis superior,nucleus reticularis inferior,ventral septum,supraoptoparaventricular region,stria terminalis,anterior entopeduncular region,astrocyte,oligodendrocyte,astrocyte end-foot,melanotrope,adenohypophysis,neurohypophysis,pars distalis,pars nervosa,pars intermedia,dorsal telencephalon,pial cell,pia mater,amygdala,anterior amygdala,anterior entopeduncular nucleus,anterior tectum,astrocyte end-foot,basal ganglion,bed nucleus of the stria terminalis,cell body layer of the optic tectum,central amygdala,dorsal pallidum,dorsal septum,lateral amygdala,lateral septum,medial amygdala,medial septum,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,pallidum,pars nervosa,posterior tectum,radial glial cell,striatum,subthalamic nucleus,telencephalon septum,ventral pallidum,ventral septum,ventricular layer of the optic tectum,Stirnorgan,amygdala,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,neurohypophysis,nucleus of the diagonal band,oligodendrocyte,optic nerve,optic tectum,pallidum,radial glial cell,striatum,telencephalon septum

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Expression summary for lhx5

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Experiment	Species	Images	Stages	Anatomy	Assay
Expression of the forkhead transcription factor FoxN4 in progenitor cells in the developing Xenopus laevis retina and brain. Paper	laevis	1 image	NF stage 45	brain, optic tectum	in situ hybridization
Defining pallial and subpallial divisions in the developing Xenopus forebrain. Paper	laevis	1 image	NF stage 40	anterior tectum, forebrain, lateral pallium, pallium, pretectum, [+] prosomere, telencephalon, ventral pallium	in situ hybridization
Expression of the forkhead transcription factor FoxN4 in progenitor cells in the developing Xenopus laevis retina and brain. Xenbase Image	laevis	1 image	NF stage 45	brain, optic tectum	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	adult frog stage	amygdala, brain, forebrain, lateral amygdala, medial amygdala, [+] mitral cell layer of the olfactory bulb, preoptic area	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	NF stage 42 to NF stage 54	amygdala, brain, diencephalon, forebrain, lateral amygdala, [+] medial amygdala, olfactory bulb, optic tectum, pallium, preoptic area, prosomere, prosomere 4, subpallium, ventral pallium	in situ hybridization
Evidences for tangential migrations in Xenopus telencephalon: developmental patterns and cell tracking experiments. Paper	laevis	1 image	NF stage 42 to NF stage 59	brain	in situ hybridization
Patterns of hypothalamic regionalization in amphibians and reptiles: common traits revealed by a genoarchitectonic approach.	laevis	1 image	NF stage 46	anterior hypothalamus, preoptic area, prethalamus, suprachiasmatic nucleus	immunohistochemistry
The LIM class homeobox gene lim5: implied role in CNS patterning in Xenopus and zebrafish. Paper	laevis	1 image	NF stage 25 to NF stage 31	brain, forebrain, forebrain-midbrain boundary, hindbrain, midbrain	in situ hybridization
Expression of the insulinoma-associated 1 (insm1) gene in Xenopus laevis tadpole retina and brain. Paper	laevis	1 image	NF stage 45	brain, forebrain, hindbrain, hypothalamus, midbrain, [+] olfactory bulb, preoptic area	in situ hybridization
Dissecting the pre-placodal transcriptome to reveal presumptive direct targets of Six1 and Eya1 in cranial placodes. Paper	laevis	1 image	NF stage 24 to NF stage 28	forebrain, hindbrain, telencephalon	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	adult frog stage	accessory olfactory bulb, amygdala, anterior commissure, anterior thalamic nucleus, bed nucleus of the stria terminalis, [+] brain, central nucleus of the thalamus, dorsal thalamus, forebrain, lateral amygdala, lateral septum, mammilary region, medial amygdala, medial septum, mitral cell layer of the olfactory bulb, olfactory bulb, pallium, pretectum, telencephalon septum, thalamus, ventral pallium, ventrolateral thalamic nucleus, ventromedial thalamic nucleus, zona limitans intrathalamica	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	adult frog stage	amygdala, anterior amygdala, anterior thalamic nucleus, bed nucleus of the stria terminalis, brain, [+] central nucleus of the thalamus, forebrain, lateral amygdala, lateral septum, mammilary region, medial amygdala, medial septum, mitral cell layer of the olfactory bulb, olfactory bulb, pallium, pretectum, retromammillary area, suprachiasmatic nucleus, telencephalon septum, thalamus, ventral pallium, ventral septum, ventrolateral thalamic nucleus, ventromedial thalamic nucleus	in situ hybridization

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