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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
lhx9	xenopus		brain [+] forebrain,telencephalon,diencephalon,midbrain,hindbrain,midbrain-hindbrain boundary,hypophysis,ventricular zone,pineal gland,optic stalk,cerebellum,fourth ventricle,medulla oblongata,optic tectum,hypothalamus,optic chiasm,suprachiasmatic nucleus,rhombomere,optic tract,rhombic lip,metencephalic artery,metencephalic vein,mesencephalic artery,mesencephalic vein,olfactory bulb,infundibulum,ventral tegmentum,dorsal tegmentum,anterior hypothalamus,posterior hypothalamus,lateral ganglionic eminence,subpallium,medial ganglionic eminence,midbrain tegmentum,eminentia thalami,pallium,pretectum,prethalamus,zona limitans intrathalamica,thalamus,oculomotor motornucleus,dorsal thalamus,trochlear motornucleus,anterior tectum,posterior tectum,accessory olfactory bulb,amygdala,anterior amygdala,anterior commissure,anterior entopeduncular nucleus,anterior thalamic nucleus,anterodorsal tegmental nucleus,anteroventral tegmental nucleus,basal forebrain,basal ganglion,bed nucleus of the stria terminalis,central amygdala,central nucleus of the thalamus,dorsal column nucleus,dorsal habenular nucleus,dorsal pallidum,dorsal pallium,dorsal septum,external plexiform layer of the olfactory bulb,glomerular layer of the olfactory bulb,granule cell,granule cell layer of the cerebellum,granule cell layer of the olfactory bulb,habenula,isthmic nucleus,lateral amygdala,lateral forebrain bundle,lateral hypothalamic nucleus,lateral pallium,lateral septum,laterodorsal tegmental nucleus,locus coeruleus,magnocellular preoptic nucleus,medial amygdala,medial pallium,medial septum,mitral cell,mitral cell layer of the olfactory bulb,nucleus accumbens,nucleus of the diagonal band,pallidum,posterior commissure,posterodorsal tegmental nucleus,posteroventral tegmental nucleus,preoptic area,raphe nucleus,telencephalon septum,solitary tract,striatum,subcommissural organ,subthalamic nucleus,torus semicircularis,ventral habenular nucleus,ventral hypothalamic nucleus,ventral pallidum,ventral pallium,ventrolateral thalamic nucleus,ventromedial thalamic nucleus,prosomere,prosomere 4,prosomere 5,prosomere 6,brain ventricle,mammilary region,tuberal region,third ventricle,forebrain-midbrain boundary,ventricular layer of the optic tectum,neuropil of the optic tectum,cell body layer of the optic tectum,radial glial cell,neural stem cell,Mauthner cell,caudal tuberal region,rostral tuberal region,nucleus of the solitary tract,prethalamus basal plate,retromammillary area,nucleus reticularis medialis,nucleus reticularis superior,nucleus reticularis inferior,ventral septum,supraoptoparaventricular region,stria terminalis,anterior entopeduncular region,astrocyte,oligodendrocyte,astrocyte end-foot,melanotrope,adenohypophysis,neurohypophysis,pars distalis,pars nervosa,pars intermedia,dorsal telencephalon,pial cell,pia mater,amygdala,anterior amygdala,anterior entopeduncular nucleus,anterior tectum,astrocyte end-foot,basal ganglion,bed nucleus of the stria terminalis,cell body layer of the optic tectum,central amygdala,dorsal pallidum,dorsal septum,lateral amygdala,lateral septum,medial amygdala,medial septum,neuropil of the optic tectum,nucleus accumbens,nucleus of the diagonal band,pallidum,pars nervosa,posterior tectum,radial glial cell,striatum,subthalamic nucleus,telencephalon septum,ventral pallidum,ventral septum,ventricular layer of the optic tectum,Stirnorgan,amygdala,astrocyte,astrocyte end-foot,basal forebrain,basal ganglion,neurohypophysis,nucleus of the diagonal band,oligodendrocyte,optic nerve,optic tectum,pallidum,radial glial cell,striatum,telencephalon septum

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Expression summary for lhx9

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Experiment	Species	Images	Stages	Anatomy	Assay
Atkinson-Leadbeater K et al. (2009) Assay Paper	laevis	2 images	NF stage 18 to NF stage 33 and 34	diencephalon, hindbrain, midbrain, telencephalon	in situ hybridization
Illes JC et al. (2009) Assay Paper	tropicalis	1 image	NF stage 31	forebrain, hindbrain, optic tectum, pretectum, rhombomere, [+] thalamus	in situ hybridization
Expression of the forkhead transcription factor FoxN4 in progenitor cells in the developing Xenopus laevis retina and brain. Paper	laevis	1 image	NF stage 45	brain, optic tectum	in situ hybridization
FGF receptor dependent regulation of Lhx9 expression in the developing nervous system. Xenbase Image	laevis	1 image	NF stage 25	hindbrain, telencephalon	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	adult frog stage	amygdala, anterior thalamic nucleus, brain, central nucleus of the thalamus, diencephalon, [+] forebrain, lateral amygdala, pallium, subpallium, thalamus, ventral pallium, ventrolateral thalamic nucleus	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	NF stage 46 to NF stage 55	amygdala, bed nucleus of the stria terminalis, brain, diencephalon, forebrain, [+] lateral amygdala, lateral septum, optic tectum, prosomere, prosomere 4, subpallium, telencephalon septum	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	NF stage 66	diencephalon, optic tectum	in situ hybridization
Evidences for tangential migrations in Xenopus telencephalon: developmental patterns and cell tracking experiments. Paper	laevis	1 image	NF stage 42 to NF stage 59	brain, subpallium	in situ hybridization
Zhang S et al. (2014) Assay Paper	laevis	2 images	NF stage 28 to NF stage 35 and 36	brain, diencephalon, forebrain, hindbrain, midbrain, [+] midbrain-hindbrain boundary	in situ hybridization
The Lhx9-integrin pathway is essential for positioning of the proepicardial organ. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 46	brain, forebrain, hindbrain, midbrain	in situ hybridization
The Lhx9-integrin pathway is essential for positioning of the proepicardial organ. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 46	brain, forebrain, hindbrain, midbrain	in situ hybridization
The Lhx9-integrin pathway is essential for positioning of the proepicardial organ. Paper	laevis	1 image	NF stage 33 and 34 to NF stage 46	brain, forebrain, hindbrain, midbrain	in situ hybridization
LIM-homeodomain genes as developmental and adult genetic markers of Xenopus forebrain functional subdivisions. Paper	laevis	1 image	adult frog stage	amygdala, anterior thalamic nucleus, bed nucleus of the stria terminalis, brain, central nucleus of the thalamus, [+] diencephalon, forebrain, lateral amygdala, lateral pallium, medial amygdala, pallium, pretectum, telencephalon septum, thalamus, ventral pallium, ventral septum	in situ hybridization

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