Search Criteria |
Gene/Clone | Species | Stage | Anatomy Item | Experimenter |
---|---|---|---|---|
shh | xenopus | embryo [+] |
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Expression summary for shh
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Experiment | Species | Images | Stages | Anatomy | Assay |
Harland lab in situ screen Assay
Harland Lab |
tropicalis |
1 image |
NF stage 20 | axial mesoderm, neural groove, neural plate, notochord | in situ hybridization |
Khokha MK et al. (2005) Assay
Paper |
tropicalis |
2 images |
NF stage 14 to NF stage 15 | floor plate, notochord | in situ hybridization |
López SL et al. (2003) Assay
Paper |
xenopus |
1 image |
NF stage 10.25 to NF stage 15 | notochord | in situ hybridization |
López SL et al. (2003) Assay
Paper |
laevis |
2 images |
NF stage 10.25 to NF stage 15 | axial mesoderm, blastopore, blastopore lip, chordal neural plate, marginal zone, [+] | in situ hybridization |
Nguyen V et al. (2005) Assay
Paper |
laevis |
1 image |
NF stage 14 | neural groove, neural plate, neuroectoderm | in situ hybridization |
Ishizuya-Oka A and Shi YB (2009) Assay
Paper |
laevis |
1 image |
NF stage 60 to NF stage 61 | gut epithelium | in situ hybridization |
Offner N et al. (2005) Assay
Paper |
xenopus |
1 image |
NF stage 15 to NF stage 18 | floor plate, notochord | in situ hybridization |
Offner N et al. (2005) Assay
Paper |
laevis |
1 image |
NF stage 15 to NF stage 18 | neural tube, prechordal plate | in situ hybridization |
Lupo G et al. (2005) Assay
Paper |
xenopus |
2 images |
neurula stage to NF stage 33 and 34 | branchial arch, cement gland primordium, floor plate, liver diverticulum, neural groove, [+] | in situ hybridization |
Silva AC et al. (2003) Assay
Paper |
laevis |
1 image |
NF stage 22 to NF stage 24 | neural tube, notochord | in situ hybridization |
Howell M et al. (2002) Assay
Paper |
xenopus |
1 image |
NF stage 35 and 36 | brain, eye, notochord | in situ hybridization |
Inomata H et al. (2008) Assay
Paper |
laevis |
2 images |
NF stage 13 | axial mesoderm, neural groove, pre-chordal neural plate | in situ hybridization |
Hasebe T et al. (2008) Assay
Paper |
laevis |
1 image |
NF stage 61 to NF stage 66 | epithelium, intestine | in situ hybridization |
Paper |
laevis |
1 image |
NF stage 14 to NF stage 28 | floor plate, neural plate, notochord, notoplate, pre-chordal neural plate | in situ hybridization |
The secreted serine protease xHtrA1 stimulates long-range FGF signaling in the early Xenopus embryo.
Paper |
laevis |
1 image |
NF stage 14 | axial mesoderm, neural groove | in situ hybridization |
The presumptive floor plate (notoplate) induces behaviors associated with convergent extension in medial but not lateral neur...
Paper |
laevis |
1 image |
NF stage 11 to NF stage 13 | blastopore lip, notochord, notoplate | in situ hybridization |
Cholesterol homeostasis in development: the role of Xenopus 7-dehydrocholesterol reductase (Xdhcr7) in neural development.
Paper |
laevis |
1 image |
NF stage 14 to NF stage 33 and 34 | epibranchial placode, floor plate, hypochord, neural groove, neural tube, [+] | in situ hybridization |
Negative regulation of Hedgehog signaling by the cholesterogenic enzyme 7-dehydrocholesterol reductase.
Paper |
xenopus |
1 image |
NF stage 10 to NF stage 35 and 36 | archenteron, brain, branchial arch, dorsal marginal zone, endoderm, [+] | in situ hybridization |
Olfactory and lens placode formation is controlled by the hedgehog-interacting protein (Xhip) in Xenopus.
Paper |
laevis |
1 image |
NF stage 17 to NF stage 32 | brain, central nervous system, diencephalon, epithelium, floor plate, [+] | in situ hybridization |
Neural tube closure requires Dishevelled-dependent convergent extension of the midline.
Paper |
laevis |
1 image |
NF stage 21 | axial mesoderm, neural groove, neural plate | in situ hybridization |
Correlation between Shh expression and DNA methylation status of the limb-specific Shh enhancer region during limb regenerati...
Paper |
laevis |
1 image |
NF stage 53 | hindlimb bud | in situ hybridization |
Distinct expression of two types of Xenopus Patched genes during early embryogenesis and hindlimb development.
Paper |
laevis |
1 image |
NF stage 14 to NF stage 31 | head, neural groove, neural plate, notochord, prechordal plate | in situ hybridization |
Distinct expression of two types of Xenopus Patched genes during early embryogenesis and hindlimb development.
Paper |
laevis |
1 image |
NF stage 52 | hindlimb, limb, limb bud, mesenchyme | in situ hybridization |
Neuroectodermal specification and regionalization of the Spemann organizer in Xenopus.
Paper |
xenopus |
1 image |
NF stage 10 to NF stage 12.5 | floor plate, notochord | in situ hybridization |
R-Spondin2 is a secreted activator of Wnt/beta-catenin signaling and is required for Xenopus myogenesis.
Paper |
laevis |
1 image |
NF stage 50 | brain, neural tube, thalamus, zona limitans intrathalamica | in situ hybridization |
Xenbase User Curated Experiment
European Xenopus Resource Centre (EXRC) |
tropicalis |
1 image |
NF stage 32 | brain, eye, foregut, gall bladder primordium, head, [+] | in situ hybridization |
Xenbase User Curated Experiment
European Xenopus Resource Centre (EXRC) |
tropicalis |
1 image |
NF stage 11 | blastopore lip, dorsal marginal zone, mesoderm, upper blastopore lip | in situ hybridization |
Expression of components of Wnt and Hedgehog pathways in different tissue layers during lung development in Xenopus laevis.
Paper |
laevis |
1 image |
NF stage 41 | epithelium, lung | in situ hybridization |
Xenopus sonic hedgehog guides retinal axons along the optic tract.
Paper |
laevis |
1 image |
NF stage 32 to NF stage 37 and 38 | brain, floor plate, neural tube, notochord, optic stalk | in situ hybridization |
A novel function for Hedgehog signalling in retinal pigment epithelium differentiation.
Paper |
laevis |
1 image |
NF stage 41 | brain, branchial arch, forebrain, hindbrain, midbrain, [+] | in situ hybridization |
A novel function for Hedgehog signalling in retinal pigment epithelium differentiation.
Paper |
laevis |
1 image |
NF stage 33 and 34 to NF stage 42 | eye, retina, retinal ganglion cell layer, retinal outer nuclear layer, retinal pigmented epithelium | in situ hybridization |
The role of Xenopus dickkopf1 in prechordal plate specification and neural patterning.
Paper |
laevis |
1 image |
NF stage 13 | axial mesoderm, neural groove, notochord, pre-chordal neural plate | in situ hybridization |
The role of Xenopus dickkopf1 in prechordal plate specification and neural patterning.
Paper |
xenopus |
1 image |
NF stage 44 | central nervous system, floor plate, midbrain, nervous system, spinal cord, [+] | in situ hybridization |
The Alzheimer-related gene presenilin-1 facilitates sonic hedgehog expression in Xenopus primary neurogenesis.
Paper |
laevis |
1 image |
NF stage 13 to NF stage 14 | floor plate, neural groove, neural plate, neural tube, notochord | in situ hybridization |
Anteroposterior axis formation in Xenopus limb bud recombinants: a model of pattern formation during limb regeneration.
Paper |
laevis |
1 image |
NF stage 55 to NF stage 56 | blastema, distal mesenchyme, limb bud | in situ hybridization |
Anteroposterior axis formation in Xenopus limb bud recombinants: a model of pattern formation during limb regeneration.
Paper |
laevis |
1 image |
NF stage 54 to NF stage 56 | blastema, hindlimb, mesenchyme | in situ hybridization |
Shh expression in developing and regenerating limb buds of Xenopus laevis.
Paper |
laevis |
1 image |
NF stage 50 to NF stage 55 | epidermis, epidermis inner layer, hindlimb, hindlimb bud, limb bud | in situ hybridization |
Shh expression in developing and regenerating limb buds of Xenopus laevis.
Paper |
laevis |
1 image |
NF stage 53 to NF stage 55 | blastema, epidermis inner layer, hindlimb, regenerating hindlimb | in situ hybridization |
Suzuki M et al. (2010) Assay
Paper |
laevis |
1 image |
NF stage 15 to NF stage 16 | floor plate, neural groove, neural plate, neural tube, neuroectoderm | in situ hybridization |
Takabatake T et al. (2000) Assay
Paper |
laevis |
2 images |
NF stage 27 to NF stage 35 and 36 | axial mesoderm, brain, endoderm, floor plate, forebrain, [+] | in situ hybridization |
Shh expression in developing and regenerating limb buds of Xenopus laevis.
Paper |
laevis |
1 image |
NF stage 50 | epidermis inner layer, hindlimb bud | in situ hybridization |
Transmembrane voltage potential controls embryonic eye patterning in Xenopus laevis.
Paper |
laevis |
1 image |
NF stage 18 to NF stage 29 and 30 | chordoneural hinge, forebrain, hindbrain, liver diverticulum, midbrain, [+] | in situ hybridization |
Williams Syndrome Transcription Factor is critical for neural crest cell function in Xenopus laevis.
Paper |
laevis |
1 image |
NF stage 35 and 36 to NF stage 37 and 38 | head region | in situ hybridization |
Identification of novel genes affecting mesoderm formation and morphogenesis through an enhanced large scale functional scre...
Paper |
tropicalis |
1 image |
NF stage 13 to NF stage 28 | axial mesoderm, dorsal marginal zone, involuted dorsal mesoderm, notochord, prechordal plate, [+] | in situ hybridization |
Tet3 CXXC Domain and Dioxygenase Activity Cooperatively Regulate Key Genes for Xenopus Eye and Neural Development.
Paper |
laevis |
1 image |
NF stage 14 | neural tube | in situ hybridization |
Essential role of CREB family proteins during Xenopus embryogenesis.
Paper |
laevis |
1 image |
NF stage 28 | brain, central nervous system, head region, pharyngeal arch, spinal cord | in situ hybridization |
Rankin SA et al. (2012) Assay
Paper |
laevis |
2 images |
NF stage 33 and 34 to NF stage 35 and 36 | brain, branchial arch, diencephalon, endoderm, esophagus, [+] | in situ hybridization |
Beck CW and Slack JM (1998) Assay
Paper |
laevis |
1 image |
NF stage 32 | chordoneural hinge, hypochord, neural tube, notochord, tail bud | in situ hybridization |
Distinct expression and shared activities of members of the hedgehog gene family of Xenopus laevis.
Paper |
laevis |
1 image |
NF stage 10 to NF stage 29 and 30 | anterior neural tube, axial mesoderm, brain, branchial arch, floor plate, [+] | in situ hybridization |
Multiple stage-dependent roles for histone deacetylases during amphibian embryogenesis: implications for the involvement of ...
Paper |
laevis |
1 image |
NF stage 33 and 34 to NF stage 41 | brain, branchial arch, forebrain, head region, notochord, [+] | in situ hybridization |
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