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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
sox11	xenopus		whole organism [+] anatomical group,cell,embryonic structure,acellular anatomical structure,anatomical region,anatomical space,extraembryonic structure,process,cell condensation,cell part,multicellular anatomical structure

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Expression summary for sox11

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Experiment	Species	Images	Stages	Anatomy	Assay
Paper	laevis	1 image	NF stage 11 to NF stage 14	animal cap, animal cap inner layer, animal hemisphere, blastocoel roof, neural plate, [+] neuroectoderm, preplacodal ectoderm	in situ hybridization
Paper	xenopus	1 image	NF stage 10.5 to NF stage 14	ectoderm, neural plate, neuroectoderm	in situ hybridization
Paper	xenopus	1 image	NF stage 10.5 to NF stage 14	ectoderm, neural plate, neuroectoderm	in situ hybridization
Paper	xenopus	1 image	NF stage 11	epidermis	in situ hybridization
Mechanisms driving neural crest induction and migration in the zebrafish and Xenopus laevis. Paper	laevis	1 image	NF stage 6 (32-cell) to NF stage 8	animal hemisphere	in situ hybridization
Identification of novel transcripts with differential dorso-ventral expression in Xenopus gastrula using serial analysis of g... Paper	tropicalis	1 image	NF stage 10 to NF stage 18	blastocoel, blastocoel roof, involuting marginal zone, neural plate	in situ hybridization
Differential distribution of competence for panplacodal and neural crest induction to non-neural and neural ectoderm. Paper	laevis	1 image	NF stage 22	anterior neural tube, anterior placodal area, head region, neural tube, posterior neural tube	in situ hybridization
Geminin cooperates with Polycomb to restrain multi-lineage commitment in the early embryo. Paper	laevis	1 image	NF stage 13	neuroectoderm	in situ hybridization
Yes-associated protein 65 (YAP) expands neural progenitors and regulates Pax3 expression in the neural plate border zone. Paper	laevis	1 image	NF stage 18	neural plate, preplacodal ectoderm	in situ hybridization
Identification of neural genes using Xenopus DNA microarrays. Paper	laevis	1 image	NF stage 18 to NF stage 29 and 30	brain, cranial neural crest, cranial placode, eye, forebrain, [+] hindbrain, midbrain, neural plate, otic vesicle, pre-chordal neural plate, tail bud	in situ hybridization
Dazap2 is required for FGF-mediated posterior neural patterning, independent of Wnt and Cdx function. Paper	laevis	1 image	NF stage 16 to NF stage 18	neural fold, neural plate, neuroectoderm	in situ hybridization
Involvement of NLK and Sox11 in neural induction in Xenopus development. Paper	laevis	1 image	NF stage 20 to NF stage 35 and 36	anterior neural tube, brain, central nervous system, head, neural tube, [+] posterior neural tube, spinal cord	in situ hybridization
Evolutionarily conserved role for SoxC genes in neural crest specification and neuronal differentiation. Paper	laevis	1 image	NF stage 14 to NF stage 28	anterior neural fold, anterior neural tube, brain, branchial arch, branchial crest, [+] chordal neural plate, cranial ganglion, eye, forebrain, hindbrain, midbrain, neural plate, neural tube, optic vesicle, pharyngeal arch, posterior neural tube, posterior placodal area, pre-chordal neural plate, preplacodal ectoderm	in situ hybridization
Six1 promotes a placodal fate within the lateral neurogenic ectoderm by functioning as both a transcriptional activator and ... Paper	laevis	1 image	NF stage 17 to NF stage 18	anterior placodal area, neural plate, neuroectoderm	in situ hybridization
Nicetto D et al. (2013) Assay Paper	laevis	1 image	NF stage 15 to NF stage 16	neural plate, neuroectoderm, sensorial layer	in situ hybridization
Cizelsky W et al. (2013) Assay Paper	laevis	1 image	NF stage 1 to NF stage 41	animal hemisphere, brain, cardiac mesoderm, central retina, chordoneural hinge, [+] ciliary marginal zone, eye, forebrain, head mesenchyme, heart primordium, hindbrain, interneuron, lateral line primordium, marginal zone, mesoderm, migratory neural crest cell, neural plate, neural plate border, neural tube, optic vesicle, peripheral retina, pharyngeal arch, pharyngeal region, preplacodal ectoderm, retinal neural layer, spinal cord	in situ hybridization
Neural transcription factors bias cleavage stage blastomeres to give rise to neural ectoderm. Paper	laevis	2 images	NF stage 5 (16-cell) to NF stage 6 (32-cell)	animal blastomere, vegetal blastomere	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 18	anterior placodal area, chordal neural plate, cranial placode, neuroectoderm, pre-chordal neural plate, [+] preplacodal ectoderm	in situ hybridization
Pa2G4 is a novel Six1 co-factor that is required for neural crest and otic development. Paper	laevis	1 image	NF stage 18	anterior placodal area, chordal neural plate, cranial placode, neural plate, neuroectoderm, [+] pre-chordal neural plate	in situ hybridization
Wbp2nl has a developmental role in establishing neural and non-neural ectodermal fates. Paper	laevis	1 image	NF stage 11 to NF stage 18	anterior placodal area, neural plate, neuroectoderm	in situ hybridization
Marchak A et al. (2017) Assay Paper	laevis	1 image	NF stage 18	neural plate, preplacodal ectoderm	in situ hybridization
Identification of retinal homeobox (rax) gene-dependent genes by a microarray approach: the DNA endoglycosylase neil3 is a m... Paper	laevis	1 image	NF stage 18 to NF stage 32	brain, eye, eye primordium, forebrain, hindbrain, [+] midbrain, neural plate, optic field, optic vesicle, pharyngeal arch, pre-chordal neural plate	in situ hybridization
Pan Y et al. (2018) Assay Paper	laevis	1 image	NF stage 41	ciliary marginal zone, eye, retina	in situ hybridization
Six1 proteins with human branchio-oto-renal mutations differentially affect cranial gene expression and otic development. Paper	laevis	1 image	NF stage 16 to NF stage 18	neural plate, preplacodal ectoderm	in situ hybridization
Sullivan CH et al. (2019) Assay Paper	laevis	2 images	NF stage 16 to NF stage 28	neural plate, neural tube, preplacodal ectoderm	in situ hybridization
Mcrs1 interacts with Six1 to influence early craniofacial and otic development. Paper	laevis	1 image	NF stage 13 to NF stage 18	neural plate, preplacodal ectoderm	in situ hybridization
Wellcome CRC pCS107 tropicalis St10-12 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10 to NF stage 12	whole organism	cDNA Library
XGC-gastrula Unigene tropicalis cDNA library	tropicalis		NF stage 10.5 to NF stage 12	whole organism	cDNA Library
XGC-neurula Unigene tropicalis cDNA library	tropicalis		NF stage 13 to NF stage 21	whole organism	cDNA Library
NICHD_XGC_Emb6 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 14 to NF stage 19	whole organism	cDNA Library
NICHD_XGC_Emb7 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 20 to NF stage 27	whole organism	cDNA Library
XGC-tadpole Unigene tropicalis cDNA library	tropicalis		NF stage 35 and 36 to NF stage 40	whole organism	cDNA Library
XGC-tailbud Unigene tropicalis cDNA library	tropicalis		NF stage 28 to NF stage 29 and 30	whole organism	cDNA Library
XGC-tailbud-head Unigene tropicalis cDNA library	tropicalis		NF stage 28 to NF stage 29 and 30	head	cDNA Library
NIH_XGC_tropTad5 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 35 and 36 to NF stage 41	whole organism	cDNA Library
NIH_XGC_tropGas5 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10 to NF stage 18	whole organism	cDNA Library
NIH_XGC_tropGas7 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10.5 to NF stage 12.5	whole organism	cDNA Library
NIH_XGC_tropGas6 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10 to NF stage 13	whole organism	cDNA Library
NIH_XGC_tropNeu5 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 14 to NF stage 18	whole organism	cDNA Library
Xenopus tropicalis embryo gastrula Unigene tropicalis cDNA library	tropicalis		NF stage 10 to NF stage 12.5	whole organism	cDNA Library
NICHD_XGC_trop_25 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 25	whole organism	cDNA Library
normalized Xenopus laevis gastrula Unigene laevis cDNA library	laevis		NF stage 10.5 to NF stage 11.5	whole organism	cDNA Library
Xenopus EST library Unigene laevis cDNA library	laevis		NF stage 45 to NF stage 66	brain	cDNA Library
Harland stage 19-23 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 19 to NF stage 23	whole organism	cDNA Library
Wellcome CRC pSK animal cap Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 7 to NF stage 9	animal cap	cDNA Library
Wellcome CRC pSK egg Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		unfertilized egg stage	egg	cDNA Library
NICHD_XGC_Emb3 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 24 to NF stage 25	whole organism	cDNA Library
NICHD_XGC_Emb1 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 10	whole organism	cDNA Library
Xenopus laevis gastrula non normalized Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 10.5 to NF stage 11.5	whole organism	cDNA Library
Wellcome CRC pRN3 dorsal lip Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 10 to NF stage 12.5	upper blastopore lip	cDNA Library

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