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XB-MORPHOLINO-17250370
Morpholino Name: sox17a MO3
Synonyms: Sox17, Sox17alpha, alpha1 splice oligo
Target mRNA: sox17a

Morpholino Type: uncategorized morpholino
Sequence: 5' CTTACCAAGCATCTTGCTGAGCTCG 3'

Source: Gene Tools LLC


Target mRNA tropicalis laevis.L laevis.S
Identities 23/25 25/25 25/25
genome
MO
 
5' GGAGCTCAGCAAGATGCTCGGTAAG 3'
    ||||||||||||||||| ||||||
3' GCTCGAGTCGTTCTACGAACCATTC 5'
 
5' CGAGCTCAGCAAGATGCTTGGTAAG 3'
   |||||||||||||||||||||||||
3' GCTCGAGTCGTTCTACGAACCATTC 5'
 
5' CGAGCTCAGCAAGATGCTTGGTAAG 3'
   |||||||||||||||||||||||||
3' GCTCGAGTCGTTCTACGAACCATTC 5'
    
Genomic Alignments Position Identity Strand Target Target mRNA
laevis 10.1 Chr6L:122899401..122899425 25/25 Antisense target sox17a.L
Chr6S:100710951..100710975 25/25 Antisense target sox17a.S
Chr6L:122912089..122912113 25/25 Antisense off-target sox17b.1.L
Chr6S:100725759..100725783 25/25 Antisense off-target sox17b.1.S
Chr5L:162880275..162880299 22/25 Antisense off-target sox7.L
Chr5S:137608571..137608595 22/25 Antisense off-target sox7.S
Chr9_10S:42431259..42431283 21/25 Antisense off-target spag9.S
Chr5L:39693806..39693830 21/25 Antisense off-target ralgapa2.L
Chr3S:30287194..30287218 21/25 unknown
tropicalis 10.0 Chr6:115156984..115157008 23/25 Antisense target sox17a
Chr6:115172980..115173004 23/25 Antisense off-target sox17b.1
Chr6:115182183..115182207 23/25 Antisense off-target sox17b.2
Chr5:151185430..151185454 22/25 Antisense off-target sox7
Chr4:140873455..140873479 21/25 Antisense off-target foxp1
Chr7:29615788..29615812 21/25 Antisense off-target sema4g
Publications
???morpholino.displaySummary.papersFirst??? Redundant early and overlapping larval roles of Xsox17 subgroup genes in Xenopus endoderm development., Mech Dev 2003              
???morpholino.displaySummary.papersRecent??? Sox17 and Sox4 differentially regulate beta-catenin/T-cell factor activity and proliferation of colon carcinoma cells., Mol Cell Biol 2007                  
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