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Summary Stage Literature (1475) Attributions Wiki
XB-STAGE-5

Papers associated with blastula stage

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Nodal and churchill1 position the expression of a notch ligand during Xenopus germ layer segregation., Favarolo MB, Revinski DR, Garavaglia MJ, López SL., Life Sci Alliance. 5 (12):


Brain enlargement with rostral bias in larvae from a spontaneously occurring female variant line of Xenopus; role of aberrant embryonic Wnt/β-catenin signaling., Hongo I, Yamaguchi C, Okamoto H., Cells Dev. April 2, 2024; 203918.                            

Small molecule-mediated reprogramming of Xenopus blastula stem cells to a neural crest state., Huber PB, LaBonne C., Dev Biol. January 1, 2024; 505 34-41.

Cohesin and CTCF do not assemble TADs in Xenopus sperm and male pronuclei., Jessberger G, Várnai C, Stocsits RR, Tang W, Stary G, Peters JM., Genome Res. December 21, 2023; 33 (12): 2094-107.

Mitochondrial leak metabolism induces the Spemann-Mangold Organizer via Hif-1α in Xenopus., MacColl Garfinkel A, Mnatsakanyan N, Patel JH, Wills AE, Shteyman A, Smith PJS, Alavian KN, Jonas EA, Khokha MK., Dev Cell. November 20, 2023; 58 (22): 2597-2613.e4.                        

Hybridization led to a rewired pluripotency network in the allotetraploid Xenopus laevis., Phelps WA, Hurton MD, Ayers TN, Carlson AE, Rosenbaum JC, Lee MT., Elife. October 3, 2023; 12                             

Purine Biosynthesis Pathways Are Required for Myogenesis in Xenopus laevis., Duperray M, Hardet F, Henriet E, Saint-Marc C, Boué-Grabot E, Daignan-Fornier B, Massé K, Pinson B., Cells. September 28, 2023; 12 (19):               

Rif1 restrains the rate of replication origin firing in Xenopus laevis., Haccard O, Ciardo D, Narrissamprakash H, Bronchain O, Kumagai A, Dunphy WG, Goldar A, Marheineke K., Commun Biol. July 29, 2023; 6 (1): 788.                                

Patterning of the Vertebrate Head in Time and Space by BMP Signaling., Zhu K, Spaink HP, Durston AJ., J Dev Biol. July 3, 2023; 11 (3):         

The complete dorsal structure is formed from only the blastocoel roof of Xenopus blastula: insight into the gastrulation movement evolutionarily conserved among chordates., Sato Y, Narasaki I, Kunimoto T, Moriyama Y, Hashimoto C., Dev Genes Evol. June 1, 2023; 233 (1): 1-12.                

Activation of P53 pathway contributes to Xenopus hybrid inviability., Shi Z, Liu G, Jiang H, Shi S, Zhang X, Deng Y, Chen Y., Proc Natl Acad Sci U S A. May 23, 2023; 120 (21): e2303698120.

Npr3 regulates neural crest and cranial placode progenitors formation through its dual function as clearance and signaling receptor., Devotta A, Juraver-Geslin H, Griffin C, Saint-Jeannet JP., Elife. May 10, 2023; 12                                                       

Mitotic chromosomes scale to nuclear-cytoplasmic ratio and cell size in Xenopus., Zhou CY, Dekker B, Liu Z, Cabrera H, Ryan J, Dekker J, Heald R., Elife. April 25, 2023; 12                                                 

Dodecaploid Xenopus longipes provides insight into the emergence of size scaling relationships during development., Miller KE, Cadart C, Heald R., Curr Biol. April 10, 2023; 33 (7): 1327-1336.e4.                

A single-cell, time-resolved profiling of Xenopus mucociliary epithelium reveals nonhierarchical model of development., Lee J, Møller AF, Chae S, Bussek A, Park TJ, Kim Y, Lee HS, Pers TH, Kwon T, Sedzinski J, Natarajan KN., Sci Adv. April 7, 2023; 9 (14): eadd5745.                                                          

Histone deacetylase 1 maintains lineage integrity through histone acetylome refinement during early embryogenesis., Zhou JJ, Cho JS, Han H, Blitz IL, Wang W, Cho KWY., Elife. March 27, 2023; 12                         

Production and characterization of monoclonal antibodies to Xenopus proteins., Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E, LaBonne C, Alfandari D, Alfandari D., Development. February 15, 2023; 150 (4):               

Production and characterization of monoclonal antibodies to xenopus proteins., Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E, LaBonne C, Alfandari D, Alfandari D., Development. February 14, 2023;                 

The H2A.Z and NuRD associated protein HMG20A controls early head and heart developmental transcription programs., Herchenröther A, Gossen S, Friedrich T, Reim A, Daus N, Diegmüller F, Leers J, Sani HM, Gerstner S, Schwarz L, Stellmacher I, Szymkowiak LV, Nist A, Stiewe T, Borggrefe T, Mann M, Mackay JP, Bartkuhn M, Borchers A, Lan J, Hake SB., Nat Commun. January 28, 2023; 14 (1): 472.                                                    

maea affects head formation through ß-catenin degradation during early Xenopus laevis development., Goto T, Shibuya H., Dev Growth Differ. January 1, 2023; 65 (1): 29-36.                  

The role of Wnt signaling in Xenopus neural induction., Velloso I, Han W, He X, Abreu JG., Curr Top Dev Biol. January 1, 2023; 153 229-254.

Alcohol induces neural tube defects by reducing retinoic acid signaling and promoting neural plate expansion., Edri T, Cohen D, Shabtai Y, Fainsod A., Front Cell Dev Biol. January 1, 2023; 11 1282273.                    

Bring the pain: wounding reveals a transition from cortical excitability to epithelial excitability in Xenopus embryos., Sepaniac LA, Davenport NR, Bement WM., Front Cell Dev Biol. January 1, 2023; 11 1295569.                

Ash2l, an obligatory component of H3K4 methylation complexes, regulates neural crest development., Mohammadparast S, Chang C., Dev Biol. December 1, 2022; 492 14-24.                                  

Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K, Freedman S, Braun R, LaBonne C., BMC Genomics. October 23, 2022; 23 (1): 723.                                  

Nascent transcriptome reveals orchestration of zygotic genome activation in early embryogenesis., Chen H, Good MC., Curr Biol. October 10, 2022; 32 (19): 4314-4324.e7.                        

A non-transcriptional function of Yap regulates the DNA replication program in Xenopus laevis., Meléndez García R, Haccard O, Chesneau A, Narassimprakash H, Roger J, Perron M, Marheineke K, Bronchain O., Elife. July 15, 2022; 11                             

Normal Table of Xenopus development: a new graphical resource., Zahn N, James-Zorn C, Ponferrada VG, Adams DS, Grzymkowski J, Buchholz DR, Nascone-Yoder NM, Horb M, Moody SA, Vize PD, Zorn AM., Development. July 15, 2022; 149 (14):                         

Lysosomes are required for early dorsal signaling in the Xenopus embryo., Tejeda-Muñoz N, De Robertis EM., Proc Natl Acad Sci U S A. April 26, 2022; 119 (17): e2201008119.                          

Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos., Orlov EE, Nesterenko AM, Korotkova DD, Parshina EA, Martynova NY, Zaraisky AG., Dev Cell. January 10, 2022; 57 (1): 95-111.e12.                                

Reduced Retinoic Acid Signaling During Gastrulation Induces Developmental Microcephaly., Gur M, Bendelac-Kapon L, Shabtai Y, Pillemer G, Fainsod A., Front Cell Dev Biol. January 1, 2022; 10 844619.                        

Kinematic self-replication in reconfigurable organisms., Kriegman S, Blackiston D, Levin M, Bongard J., Proc Natl Acad Sci U S A. December 7, 2021; 118 (49):                               

Application of the RNA interference technique to Xenopus embryos: Specific reduction of the β-catenin gene products by short double-stranded RNA produced by recombinant human Dicer., Tagami Y, Nishiyama T, Omote M, Watanabe M., Dev Growth Differ. December 1, 2021; 63 (9): 467-477.

The DNA-to-cytoplasm ratio broadly activates zygotic gene expression in Xenopus., Jukam D, Kapoor RR, Straight AF, Skotheim JM., Curr Biol. October 11, 2021; 31 (19): 4269-4281.e8.                          

The enpp4 ectonucleotidase regulates kidney patterning signalling networks in Xenopus embryos., Massé K, Bhamra S, Paroissin C, Maneta-Peyret L, Boué-Grabot E, Jones EA., Commun Biol. October 7, 2021; 4 (1): 1158.                                

Xenopus chip for single-egg trapping, in vitro fertilization, development, and tadpole escape., Nam SW, Chae JP, Kwon YH, Son MY, Bae JS, Park MJ., Biochem Biophys Res Commun. September 10, 2021; 569 29-34.

The dual-specificity protein kinase Clk3 is essential for Xenopus neural development., Virgirinia RP, Nakamura M, Takebayashi-Suzuki K, Fatchiyah F, Suzuki A., Biochem Biophys Res Commun. August 27, 2021; 567 99-105.                                  

Rab7 is required for mesoderm patterning and gastrulation in Xenopus., Kreis J, Wielath FM, Vick P., Biol Open. July 15, 2021; 10 (7):                                           

A novel class III endogenous retrovirus with a class I envelope gene in African frogs with an intact genome and developmentally regulated transcripts in Xenopus tropicalis., Yedavalli VRK, Patil A, Parrish J, Kozak CA., Retrovirology. July 14, 2021; 18 (1): 20.              

Temporal Gradients Controlling Embryonic Cell Cycle., Liu B, Zhao H, Wu K, Großhans J., Biology (Basel). June 9, 2021; 10 (6):


The cytokine FAM3B/PANDER is an FGFR ligand that promotes posterior development in Xenopus., Zhang F, Zhu X, Wang P, He Q, Huang H, Zheng T, Li Y, Jia H, Xu L, Zhao H, Colozza G, Tao Q, De Robertis EM, Ding Y., Proc Natl Acad Sci U S A. May 18, 2021; 118 (20):           

Kindlin2 regulates neural crest specification via integrin-independent regulation of the FGF signaling pathway., Wang H, Wang C, Wang C, Wang C, Long Q, Zhang Y, Wang M, Liu J, Qi X, Cai D, Lu G, Sun J, Yao YG, Chan WY, Chan WY, Deng Y, Zhao H., Development. May 15, 2021; 148 (10):                                           

Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR, van Genesen S, Li Q, Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC., EMBO J. May 3, 2021; 40 (9): e104913.                        

Lamin B receptor-mediated chromatin tethering to the nuclear envelope is detrimental to the Xenopus blastula., Oda H, Kato S, Ohsumi K, Iwabuchi M., J Biochem. April 18, 2021; 169 (3): 313-326.

Furry is required for cell movements during gastrulation and functionally interacts with NDR1., Cervino AS, Moretti B, Stuckenholz C, Grecco HE, Davidson LA, Davidson LA, Cirio MC., Sci Rep. March 23, 2021; 11 (1): 6607.                                  

Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage., Castro Colabianchi AM, Tavella MB, Boyadjián López LE, Rubinstein M, Franchini LF, López SL., Biol Open. February 25, 2021; 10 (2):                 

Establishing embryonic territories in the context of Wnt signaling., Velloso I, Maia LA, Amado NG, Reis AH, He X, Abreu JG., Int J Dev Biol. January 1, 2021; 65 (4-5-6): 227-233.      

Epigenetic regulation of replication origin assembly: A role for histone H1 and chromatin remodeling factors., Falbo L, Costanzo V., Bioessays. January 1, 2021; 43 (1): e2000181.

Dact-4 is a Xenopus laevis Spemann organizer gene related to the Dapper/Frodo antagonist of β-catenin family of proteins., Colozza G, De Robertis EM., Gene Expr Patterns. December 1, 2020; 38 119153.                        

Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals., Mulholland CB, Nishiyama A, Ryan J, Nakamura R, Yiğit M, Glück IM, Trummer C, Qin W, Bartoschek MD, Traube FR, Parsa E, Ugur E, Modic M, Acharya A, Stolz P, Ziegenhain C, Wierer M, Enard W, Carell T, Lamb DC, Takeda H, Nakanishi M, Bultmann S, Leonhardt H., Nat Commun. November 24, 2020; 11 (1): 5972.                

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