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Summary Stage Literature (2217) Attributions Wiki
XB-STAGE-7

Papers associated with gastrula stage

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Dissecting the mystery of embryonic scaling: The Scalers Hypothesis and its confirmation in sea urchin embryos., Timoshina PS, Nesterenko AM, Parshina EA, Orlov EE, Eroshkin FM, Zaraisky AG., Cells Dev. October 20, 2024; 203972.

Mechanosensitive recruitment of Vinculin maintains junction integrity and barrier function at epithelial tricellular junctions., van den Goor L, Iseler J, Koning KM, Miller AL., Curr Biol. September 21, 2024; 34 (20): 4677-4691.e5.   


Cell cycle length governs heterochromatin reprogramming during early development in non-mammalian vertebrates., Fukushima HS, Ikeda T, Ikeda S, Takeda H., EMBO Rep. August 28, 2024; 25 (8): 3300-3323.   


Modeling the roles of cohesotaxis, cell-intercalation, and tissue geometry in collective cell migration of Xenopus mesendoderm., Comlekoglu T, Dzamba BJ, Pacheco GG, Shook DR, Sego TJ, Glazier JA, Peirce SM, DeSimone DW., Biol Open. August 15, 2024; 13 (8):   


Sox21 homeologs autoregulate expression levels to control progression through neurogenesis., Damuth DL, Cunningham DD, Silva EM., Genesis. August 1, 2024; 62 (4): e23612.   


The RhoGEF protein Plekhg5 self-associates via its PH domain to regulate apical cell constriction., Popov IK, Tao J, Chang C., Mol Biol Cell. August 1, 2024; 35 (10): ar134.   


Wnt signaling in cell adhesion, development, and colon cancer., Tejeda-Muñoz N, Mei KC., IUBMB Life. July 17, 2024; 76 (7): 383-396.   


Molecular analysis of a self-organizing signaling pathway for Xenopus axial patterning from egg to tailbud., Azbazdar Y, De Robertis EM., Proc Natl Acad Sci U S A. July 9, 2024; 121 (28): e2408346121.   


Na,K-ATPase activity promotes macropinocytosis in colon cancer via Wnt signaling., Tejeda-Muñoz N, Azbazdar Y, Sosa EA, Monka J, Wei PS, Binder G, Mei KC, Kurmangaliyev YZ, De Robertis EM., Biol Open. May 15, 2024; 13 (5):   


A time-resolved single-cell roadmap of the logic driving anterior neural crest diversification from neural border to migration stages., Kotov A, Seal S, Alkobtawi M, Kappès V, Ruiz SM, Arbès H, Harland RM, Peshkin L, Monsoro-Burq AH., Proc Natl Acad Sci U S A. May 7, 2024; 121 (19): e2311685121.   


Quantitative proteome dynamics across embryogenesis in a model chordate., Frese AN, Mariossi A, Levine MS, Wühr M., iScience. April 19, 2024; 27 (4): 109355.   


Bi-allelic ACBD6 variants lead to a neurodevelopmental syndrome with progressive and complex movement disorders., Kaiyrzhanov R, Rad A, Lin SJ, Bertoli-Avella A, Kallemeijn WW, Godwin A, Zaki MS, Huang K, Lau T, Petree C, Efthymiou S, Karimiani EG, Hempel M, Normand EA, Rudnik-Schöneborn S, Schatz UA, Baggelaar MP, Ilyas M, Sultan T, Alvi JR, Ganieva M, Fowler B, Aanicai R, Tayfun GA, Al Saman A, Alswaid A, Amiri N, Asilova N, Shotelersuk V, Yeetong P, Azam M, Babaei M, Monajemi GB, Mohammadi P, Samie S, Banu SH, Pinto Basto J, Kortüm F, Bauer M, Bauer P, Beetz C, Garshasbi M, Issa AH, Eyaid W, Ahmed H, Hashemi N, Hassanpour K, Herman I, Ibrohimov S, Abdul-Majeed BA, Imdad M, Isrofilov M, Kaiyal Q, Khan S, Kirmse B, Koster J, Lourenço CM, Mitani T, Moldovan O, Murphy D, Najafi M, Pehlivan D, Rocha ME, Salpietro V, Schmidts M, Shalata A, Mahroum M, Talbeya JK, Taylor RW, Vazquez D, Vetro A, Waterham HR, Zaman M, Schrader TA, Chung WK, Guerrini R, Lupski JR, Gleeson J, Suri M, Jamshidi Y, Bhatia KP, Vona B, Schrader M, Severino M, Guille M, Tate EW, Varshney GK, Houlden H, Maroofian R., Brain. April 4, 2024; 147 (4): 1436-1456.   


Brain enlargement with rostral bias in larvae from a spontaneously occurring female variant line of Xenopus; role of aberrant embryonic Wnt/β-catenin signaling., Hongo I, Yamaguchi C, Okamoto H., Cells Dev. April 3, 2024; 203918.   


Maternal and zygotic contributions to H3K4me1 chromatin marking during germ layer formation., Paraiso KD, Blitz IL, Cho KWY., Dev Biol. February 15, 2024; 518 8-19.

Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer., Baxi AB, Li J, Quach VM, Pade LR, Moody SA, Nemes P., Proc Natl Acad Sci U S A. February 6, 2024; 121 (6): e2311625121.   


ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation., Wang C, Liu Z, Zeng Y, Zhou L, Long Q, Hassan IU, Zhang Y, Qi X, Cai D, Mao B, Lu G, Sun J, Yao Y, Deng Y, Zhao Q, Feng B, Zhou Q, Chan WY, Zhao H., EMBO Rep. February 1, 2024; 25 (2): 646-671.   


Two-phase kinetics and cell cortex elastic behavior in Xenopus gastrula cell-cell adhesion., Parent SE, Luu O, Bruce AEE, Winklbauer R., Dev Cell. January 8, 2024; 59 (1): 141-155.e6.   


PCP and Septins govern the polarized organization of the actin cytoskeleton during convergent extension., Devitt CC, Weng S, Bejar-Padilla VD, Alvarado J, Wallingford JB., Curr Biol. January 5, 2024; 34 (3): 615-622.e4.   


Isthmin: A multifunctional secretion protein., Liang JY, Wei HJ, Tang YY., Cytokine. January 1, 2024; 173 156423.

Cell contacts and pericellular matrix in the Xenopus gastrula chordamesoderm., Luu O, Barua D, Winklbauer R., PLoS One. January 1, 2024; 19 (2): e0297420.   


Enhancement of neural crest formation by mechanical force in Xenopus development., Kaneshima T, Ogawa M, Yamamoto T, Tsuboyama Y, Miyata Y, Kotani T, Okajima T, Michiue T., Int J Dev Biol. January 1, 2024; 68 (1): 25-37.   


Zbtb11 interacts with Otx2 and patterns the anterior neuroectoderm in Xenopus., Satou-Kobayashi Y, Takahashi S, Haramoto Y, Asashima M, Taira M., PLoS One. January 1, 2024; 19 (7): e0293852.   


Head organizer: Cerberus and IGF cooperate in brain induction in Xenopus embryos., Azbazdar Y, Pera EM, De Robertis EM., Cells Dev. December 16, 2023; 203897.   


Mitochondrial leak metabolism induces the Spemann-Mangold Organizer via Hif-1α in Xenopus., MacColl Garfinkel A, Mnatsakanyan N, Patel JH, Wills AE, Shteyman A, Smith PJS, Alavian KN, Jonas EA, Khokha MK., Dev Cell. November 20, 2023; 58 (22): 2597-2613.e4.   


Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum., Raghavan R, Coppola U, Wu Y, Ihewulezi C, Negrón-Piñeiro LJ, Maguire JE, Hong J, Cunningham M, Kim HJ, Albert TJ, Ali AM, Saint-Jeannet JP, Ristoratore F, Dahia CL, Di Gregorio A., BMC Ecol Evol. October 27, 2023; 23 (1): 63.   


Xenopus Ssbp2 is required for embryonic pronephros morphogenesis and terminal differentiation., Cervino AS, Collodel MG, Lopez IA, Roa C, Hochbaum D, Hukriede NA, Cirio MC., Sci Rep. October 4, 2023; 13 (1): 16671.   


Patterning of the Vertebrate Head in Time and Space by BMP Signaling., Zhu K, Spaink HP, Durston AJ., J Dev Biol. July 3, 2023; 11 (3):   


Gene expression analysis of the Tao kinase family of Ste20p-like map kinase kinase kinases during early embryonic development in Xenopus laevis., Yoder MD, Van Osten S, Weber GF., Gene Expr Patterns. June 1, 2023; 48 119318.

The complete dorsal structure is formed from only the blastocoel roof of Xenopus blastula: insight into the gastrulation movement evolutionarily conserved among chordates., Sato Y, Narasaki I, Kunimoto T, Moriyama Y, Hashimoto C., Dev Genes Evol. June 1, 2023; 233 (1): 1-12.   


A single-cell, time-resolved profiling of Xenopus mucociliary epithelium reveals nonhierarchical model of development., Lee J, Møller AF, Chae S, Bussek A, Park TJ, Kim Y, Lee HS, Pers TH, Kwon T, Sedzinski J, Natarajan KN., Sci Adv. April 7, 2023; 9 (14): eadd5745.   


The heparan sulfate modification enzyme, Hs6st1, governs Xenopus neuroectodermal patterning by regulating distributions of Fgf and Noggin., Yamamoto T, Kaneshima T, Tsukano K, Michiue T., Dev Biol. April 1, 2023; 496 87-94.   


ccl19 and ccl21 affect cell movements and differentiation in early Xenopus development., Goto T, Michiue T, Shibuya H., Dev Growth Differ. April 1, 2023; 65 (3): 175-189.   


Two Homeobox Transcription Factors, Goosecoid and Ventx1.1, Oppositely Regulate Chordin Transcription in Xenopus Gastrula Embryos., Kumar V, Umair Z, Lee U, Kim J., Cells. March 11, 2023; 12 (6):   


Mink1 regulates spemann organizer cell fate in the xenopus gastrula via Hmga2., Colleluori V, Khokha MK., Dev Biol. March 1, 2023; 495 42-53.   


Production and characterization of monoclonal antibodies to Xenopus proteins., Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E, LaBonne C, Alfandari D, Alfandari D., Development. February 15, 2023; 150 (4):   


Production and characterization of monoclonal antibodies to xenopus proteins., Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E, LaBonne C, Alfandari D, Alfandari D., Development. February 14, 2023;   


Characteristic tetraspanin expression patterns mark various tissues during early Xenopus development., Kuriyama S, Tanaka M., Dev Growth Differ. February 1, 2023; 65 (2): 109-119.   


The H2A.Z and NuRD associated protein HMG20A controls early head and heart developmental transcription programs., Herchenröther A, Gossen S, Friedrich T, Reim A, Daus N, Diegmüller F, Leers J, Sani HM, Gerstner S, Schwarz L, Stellmacher I, Szymkowiak LV, Nist A, Stiewe T, Borggrefe T, Mann M, Mackay JP, Bartkuhn M, Borchers A, Lan J, Hake SB., Nat Commun. January 28, 2023; 14 (1): 472.   


Retinoic acid control of pax8 during renal specification of Xenopus pronephros involves hox and meis3., Durant-Vesga J, Suzuki N, Ochi H, Le Bouffant R, Eschstruth A, Ogino H, Umbhauer M, Riou JF., Dev Biol. January 1, 2023; 493 17-28.   


Polarized contact behavior in directionally migrating Xenopus gastrula mesendoderm., Nagel M, Winklbauer R., Int J Dev Biol. January 1, 2023; 67 (3): 79-90.   


Regulation of gene expression downstream of a novel Fgf/Erk pathway during Xenopus development., Cowell LM, King M, West H, Broadsmith M, Genever P, Pownall ME, Isaacs HV., PLoS One. January 1, 2023; 18 (10): e0286040.   


Alcohol induces neural tube defects by reducing retinoic acid signaling and promoting neural plate expansion., Edri T, Cohen D, Shabtai Y, Fainsod A., Front Cell Dev Biol. January 1, 2023; 11 1282273.   


Bring the pain: wounding reveals a transition from cortical excitability to epithelial excitability in Xenopus embryos., Sepaniac LA, Davenport NR, Bement WM., Front Cell Dev Biol. January 1, 2023; 11 1295569.   


Ash2l, an obligatory component of H3K4 methylation complexes, regulates neural crest development., Mohammadparast S, Chang C., Dev Biol. December 1, 2022; 492 14-24.   


Epigenomic dynamics of early Xenopus Embryos., Zhou JJ, Cho KWY., Dev Growth Differ. December 1, 2022; 64 (9): 508-516.   

Zbtb21 is required for the anterior-posterior patterning of neural tissue in the early Xenopus embryo., Takebayashi-Suzuki K, Uchida M, Suzuki A., Biochem Biophys Res Commun. November 19, 2022; 630 190-197.   


Hnf1b renal expression directed by a distal enhancer responsive to Pax8., Goea L, Buisson I, Bello V, Eschstruth A, Paces-Fessy M, Le Bouffant R, Chesneau A, Cereghini S, Riou JF, Umbhauer M., Sci Rep. November 19, 2022; 12 (1): 19921.   


Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK., Nat Commun. November 5, 2022; 13 (1): 6681.   


Microsurgical Methods to Make the Keller Sandwich Explant and the Dorsal Isolate., Davidson LA., Cold Spring Harb Protoc. November 1, 2022; 2022 (11): Pdb.prot097386.

Microsurgical Methods to Isolate and Culture the Early Gastrula Dorsal Marginal Zone., Davidson LA, Davidson LA., Cold Spring Harb Protoc. November 1, 2022; 2022 (11): Pdb.prot097360.

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