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Summary Stage Literature (2179) Attributions Wiki
XB-STAGE-7

Papers associated with gastrula stage

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Patterning of the Vertebrate Head in Time and Space by BMP Signaling., Zhu K, Spaink HP, Durston AJ., J Dev Biol. July 3, 2023; 11 (3):


Gene expression analysis of the Tao kinase family of Ste20p-like map kinase kinase kinases during early embryonic development in Xenopus laevis., Yoder MD, Van Osten S, Weber GF., Gene Expr Patterns. June 1, 2023; 48 119318.

The complete dorsal structure is formed from only the blastocoel roof of Xenopus blastula: insight into the gastrulation movement evolutionarily conserved among chordates., Sato Y, Narasaki I, Kunimoto T, Moriyama Y, Hashimoto C., Dev Genes Evol. June 1, 2023; 233 (1): 1-12.                

A single-cell, time-resolved profiling of Xenopus mucociliary epithelium reveals nonhierarchical model of development., Lee J, Møller AF, Chae S, Bussek A, Park TJ, Kim Y, Lee HS, Pers TH, Kwon T, Sedzinski J, Natarajan KN., Sci Adv. April 7, 2023; 9 (14): eadd5745.                                                          

ccl19 and ccl21 affect cell movements and differentiation in early Xenopus development., Goto T, Michiue T, Shibuya H., Dev Growth Differ. April 1, 2023; 65 (3): 175-189.                

Two Homeobox Transcription Factors, Goosecoid and Ventx1.1, Oppositely Regulate Chordin Transcription in Xenopus Gastrula Embryos., Kumar V, Umair Z, Lee U, Kim J., Cells. March 11, 2023; 12 (6):                 

Mink1 regulates spemann organizer cell fate in the xenopus gastrula via Hmga2., Colleluori V, Khokha MK., Dev Biol. March 1, 2023; 495 42-53.                            

Production and characterization of monoclonal antibodies to Xenopus proteins., Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E, LaBonne C, Alfandari D, Alfandari D., Development. February 15, 2023; 150 (4):               

Production and characterization of monoclonal antibodies to xenopus proteins., Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E, LaBonne C, Alfandari D, Alfandari D., Development. February 14, 2023;                 

Characteristic tetraspanin expression patterns mark various tissues during early Xenopus development., Kuriyama S, Tanaka M., Dev Growth Differ. February 1, 2023; 65 (2): 109-119.                

The H2A.Z and NuRD associated protein HMG20A controls early head and heart developmental transcription programs., Herchenröther A, Gossen S, Friedrich T, Reim A, Daus N, Diegmüller F, Leers J, Sani HM, Gerstner S, Schwarz L, Stellmacher I, Szymkowiak LV, Nist A, Stiewe T, Borggrefe T, Mann M, Mackay JP, Bartkuhn M, Borchers A, Lan J, Hake SB., Nat Commun. January 28, 2023; 14 (1): 472.                                                    

Ash2l, an obligatory component of H3K4 methylation complexes, regulates neural crest development., Mohammadparast S, Chang C., Dev Biol. December 1, 2022; 492 14-24.                                  

Epigenomic dynamics of early Xenopus Embryos., Zhou JJ, Cho KWY., Dev Growth Differ. December 1, 2022; 64 (9): 508-516.  

Hnf1b renal expression directed by a distal enhancer responsive to Pax8., Goea L, Buisson I, Bello V, Eschstruth A, Paces-Fessy M, Le Bouffant R, Chesneau A, Cereghini S, Riou JF, Umbhauer M., Sci Rep. November 19, 2022; 12 (1): 19921.            

Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK., Nat Commun. November 5, 2022; 13 (1): 6681.                                            

Microsurgical Methods to Make the Keller Sandwich Explant and the Dorsal Isolate., Davidson LA., Cold Spring Harb Protoc. November 1, 2022; 2022 (11): Pdb.prot097386.

Microsurgical Methods to Isolate and Culture the Early Gastrula Dorsal Marginal Zone., Davidson LA, Davidson LA., Cold Spring Harb Protoc. November 1, 2022; 2022 (11): Pdb.prot097360.

Bmp4 Synexpression Gene, Sizzled, Transcription Is Collectively Modulated by Smad1 and Ventx1.1/Ventx2.1 in Early Xenopus Embryos., Rehman ZU, Tayyaba F, Lee U, Kim J., Int J Mol Sci. November 1, 2022; 23 (21):                   

Predictive assays for craniofacial malformations: evaluation in Xenopus laevis embryos exposed to triadimefon., Battistoni M, Metruccio F, Di Renzo F, Bacchetta R, Menegola E., Arch Toxicol. October 1, 2022; 96 (10): 2815-2824.          

Eph/ephrin signaling controls cell contacts and formation of a structurally asymmetrical tissue boundary in the Xenopus gastrula., Barua D, Winklbauer R., Dev Biol. October 1, 2022; 490 73-85.                        

SNAP- and Halo-tagging and dye introduction protocol for live microscopy in Xenopus embryos., Dudley CE, van den Goor L, Miller AL., STAR Protoc. September 16, 2022; 3 (3): 101622.

Tissue Rotation of the Xenopus Anterior-Posterior Neural Axis Reveals Profound but Transient Plasticity at the Mid-Gastrula Stage., Bolkhovitinov L, Weselman BT, Shaw GA, Dong C, Giribhattanavar J, Saha MS., J Dev Biol. September 10, 2022; 10 (3):


Maternal Wnt11b regulates cortical rotation during Xenopus axis formation: analysis of maternal-effect wnt11b mutants., Houston DW, Elliott KL, Coppenrath K, Wlizla M, Horb ME., Development. September 1, 2022; 149 (17):                                   

Positive feedback regulation of frizzled-7 expression robustly shapes a steep Wnt gradient in Xenopus heart development, together with sFRP1 and heparan sulfate., Yamamoto T, Kambayashi Y, Otsuka Y, Afouda BA, Giuraniuc C, Michiue T, Hoppler S., Elife. August 9, 2022; 11                                 

Xenopus Dusp6 modulates FGF signaling to precisely pattern pre-placodal ectoderm., Tsukano K, Yamamoto T, Watanabe T, Michiue T., Dev Biol. August 1, 2022; 488 81-90.                          

Normal Table of Xenopus development: a new graphical resource., Zahn N, James-Zorn C, Ponferrada VG, Adams DS, Grzymkowski J, Buchholz DR, Nascone-Yoder NM, Horb M, Moody SA, Vize PD, Zorn AM., Development. July 15, 2022; 149 (14):                         

Stiffness estimation of transversely anisotropic materials using a novel indentation tester with a rectangular hole., Tamura A, Saiki M, Hongu JI, Matsumoto T., Comput Methods Biomech Biomed Engin. July 14, 2022; 1-12.

Evo-Devo of Urbilateria and its larval forms., De Robertis EM, Tejeda-Muñoz N., Dev Biol. July 1, 2022; 487 10-20.        

Comparative Metabolomics of Small Molecules Specifically Expressed in the Dorsal or Ventral Marginal Zones in Vertebrate Gastrula., Suzuki Y, Hayasaka R, Hasebe M, Ikeda S, Soga T, Tomita M, Hirayama A, Kuroda H., Metabolites. June 20, 2022; 12 (6):


Rapalog-induced cell adhesion molecule inhibits mesoderm migration in Xenopus embryos by increasing frequency of adhesion to the ectoderm., Usami C, Inomata H., Genes Cells. June 1, 2022; 27 (6): 436-450.            

FGF/MAPK/Ets signaling in Xenopus ectoderm contributes to neural induction and patterning in an autonomous and paracrine manner, respectively., Hongo I, Okamoto H., Cells Dev. June 1, 2022; 170 203769.

ccr7 affects both morphogenesis and differentiation during early Xenopus embryogenesis., Goto T, Michiue T, Shibuya H., Dev Growth Differ. June 1, 2022; 64 (5): 254-260.        

The Cytoskeletal Protein Zyxin Inhibits Retinoic Acid Signaling by Destabilizing the Maternal mRNA of the RXRγ Nuclear Receptor., Parshina EA, Orlov EE, Zaraisky AG, Martynova NY., Int J Mol Sci. May 17, 2022; 23 (10):                 

ARVCF catenin controls force production during vertebrate convergent extension., Huebner RJ, Weng S, Lee C, Lee C, Sarıkaya S, Papoulas O, Cox RM, Marcotte EM, Wallingford JB., Dev Cell. May 9, 2022; 57 (9): 1119-1131.e5.                      

Lysosomes are required for early dorsal signaling in the Xenopus embryo., Tejeda-Muñoz N, De Robertis EM., Proc Natl Acad Sci U S A. April 26, 2022; 119 (17): e2201008119.                          

Characterization of convergent thickening, a major convergence force producing morphogenic movement in amphibians., Shook DR, Wen JWH, Rolo A, O'Hanlon M, Francica B, Dobbins D, Skoglund P, DeSimone DW, Winklbauer R, Keller RE., Elife. April 11, 2022; 11                                     

Yolk platelets impede nuclear expansion in Xenopus embryos., Shimogama S, Iwao Y, Hara Y., Dev Biol. February 1, 2022; 482 101-113.                    

Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos., Orlov EE, Nesterenko AM, Korotkova DD, Parshina EA, Martynova NY, Zaraisky AG., Dev Cell. January 10, 2022; 57 (1): 95-111.e12.                                

Reduced Retinoic Acid Signaling During Gastrulation Induces Developmental Microcephaly., Gur M, Bendelac-Kapon L, Shabtai Y, Pillemer G, Fainsod A., Front Cell Dev Biol. January 1, 2022; 10 844619.                        

Retinoic Acid is Required for Normal Morphogenetic Movements During Gastrulation., Gur M, Edri T, Moody SA, Fainsod A., Front Cell Dev Biol. January 1, 2022; 10 857230.                  

dmrt2 and myf5 Link Early Somitogenesis to Left-Right Axis Determination in Xenopus laevis., Tingler M, Brugger A, Feistel K, Schweickert A., Front Cell Dev Biol. January 1, 2022; 10 858272.                  

FGF-mediated establishment of left-right asymmetry requires Rab7 function in the dorsal mesoderm in Xenopus., Kreis J, Camuto CM, Elsner CC, Vogel S, Vick P., Front Cell Dev Biol. January 1, 2022; 10 981762.            

Abnormal left-right organizer and laterality defects in Xenopus embryos after formin inhibitor SMIFH2 treatment., Petri N, Nordbrink R, Tsikolia N, Kremnyov S., PLoS One. January 1, 2022; 17 (11): e0275164.        

A convergent molecular network underlying autism and congenital heart disease., Rosenthal SB, Willsey HR, Xu Y, Xu Y, Mei Y, Dea J, Wang S, Curtis C, Sempou E, Khokha MK, Chi NC, Willsey AJ, Fisch KM, Ideker T., Cell Syst. November 17, 2021; 12 (11): 1094-1107.e6.            

Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos., Umair Z, Kumar V, Goutam RS, Kumar S, Kumar S, Lee U, Kim J., Mol Cells. October 31, 2021; 44 (10): 723-735.          

Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula., Kumar V, Goutam RS, Umair Z, Park S, Lee U, Kim J., Cells. October 17, 2021; 10 (10):             

Imaging of dynamic actin remodeling reveals distinct behaviors of head and trunk mesoderm in gastrulating Xenopus laevis., Komatsu V, Doddihal V, Chang C., MicroPubl Biol. October 14, 2021; 2021     

Preparation of three-notochord explants for imaging analysis of the cell movements of convergent extension during early Xenopus morphogenesis., Goto T, Keller R., Dev Growth Differ. October 1, 2021; 63 (8): 429-438.            

Function of chromatin modifier Hmgn1 during neural crest and craniofacial development., Ihewulezi C, Saint-Jeannet JP., Genesis. October 1, 2021; 59 (10): e23447.              

Cell-cell contact landscapes in Xenopus gastrula tissues., Barua D, Nagel M, Winklbauer R., Proc Natl Acad Sci U S A. September 28, 2021; 118 (39):                                           

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