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Summary Stage Literature (1477) Attributions Wiki
XB-STAGE-5

Papers associated with blastula stage

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Dact-4 is a Xenopus laevis Spemann organizer gene related to the Dapper/Frodo antagonist of β-catenin family of proteins., Colozza G, De Robertis EM., Gene Expr Patterns. December 1, 2020; 38 119153.                        

Recent evolution of a TET-controlled and DPPA3/STELLA-driven pathway of passive DNA demethylation in mammals., Mulholland CB, Nishiyama A, Ryan J, Nakamura R, Yiğit M, Glück IM, Trummer C, Qin W, Bartoschek MD, Traube FR, Parsa E, Ugur E, Modic M, Acharya A, Stolz P, Ziegenhain C, Wierer M, Enard W, Carell T, Lamb DC, Takeda H, Nakanishi M, Bultmann S, Leonhardt H., Nat Commun. November 24, 2020; 11 (1): 5972.                

Hes5.9 Coordinate FGF and Notch Signaling to Modulate Gastrulation via Regulating Cell Fate Specification and Cell Migration in Xenopus tropicalis., Huang X, Zhang L, Yang S, Zhang Y, Wu M, Chen P., Genes (Basel). November 18, 2020; 11 (11):                   

Mcrs1 interacts with Six1 to influence early craniofacial and otic development., Neilson KM, Keer S, Bousquet N, Macrorie O, Majumdar HD, Kenyon KL, Alfandari D, Alfandari D, Moody SA., Dev Biol. November 1, 2020; 467 (1-2): 39-50.                  

TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis., Chen M, Amado N, Tan J, Reis A, Ge M, Abreu JG, He X., Elife. September 14, 2020; 9                                                                                           

Pinhead signaling regulates mesoderm heterogeneity via the FGF receptor-dependent pathway., Ossipova O, Itoh K, Radu A, Ezan J, Sokol SY., Development. September 11, 2020; 147 (17):                 

GSK3 Inhibits Macropinocytosis and Lysosomal Activity through the Wnt Destruction Complex Machinery., Albrecht LV, Tejeda-Muñoz N, Bui MH, Cicchetto AC, Di Biagio D, Colozza G, Schmid E, Piccolo S, Christofk HR, De Robertis EM., Cell Rep. July 28, 2020; 32 (4): 107973.                                      

Epigenetic homogeneity in histone methylation underlies sperm programming for embryonic transcription., Oikawa M, Simeone A, Hormanseder E, Teperek M, Gaggioli V, O'Doherty A, Falk E, Sporniak M, D'Santos C, Franklin VNR, Kishore K, Bradshaw CR, Keane D, Freour T, David L, Grzybowski AT, Ruthenburg AJ, Gurdon J, Jullien J., Nat Commun. July 13, 2020; 11 (1): 3491.              

Polo-like kinase 1 (Plk1) is a positive regulator of DNA replication in the Xenopus in vitro system., Ciardo D, Haccard O, Narassimprakash H, Chiodelli V, Goldar A, Marheineke K., Cell Cycle. July 1, 2020; 19 (14): 1817-1832.

The neurodevelopmental disorder risk gene DYRK1A is required for ciliogenesis and control of brain size in Xenopus embryos., Willsey HR, Xu Y, Xu Y, Everitt A, Dea J, Exner CRT, Willsey AJ, State MW, Harland RM., Development. June 22, 2020; 147 (21):                             

Chromatin accessibility and histone acetylation in the regulation of competence in early development., Esmaeili M, Blythe SA, Tobias JW, Zhang K, Yang J, Klein PS., Dev Biol. June 1, 2020; 462 (1): 20-35.                

A comparative analysis of fibroblast growth factor receptor signalling during Xenopus development., Brunsdon H, Isaacs HV., Biol Cell. May 1, 2020; 112 (5): 127-139.                

SSRP1-mediated histone H1 eviction promotes replication origin assembly and accelerated development., Falbo L, Raspelli E, Romeo F, Fiorani S, Pezzimenti F, Casagrande F, Costa I, Parazzoli D, Costanzo V., Nat Commun. March 12, 2020; 11 (1): 1345.                

The regulatory proteins DSCR6 and Ezh2 oppositely regulate Stat3 transcriptional activity in mesoderm patterning during Xenopus development., Loreti M, Shi DL, Carron C., J Biol Chem. February 28, 2020; 295 (9): 2724-2735.                

A scalable pipeline for designing reconfigurable organisms., Kriegman S, Blackiston D, Levin M, Bongard J., Proc Natl Acad Sci U S A. January 28, 2020; 117 (4): 1853-1859.        

The tumor suppressor PTPRK promotes ZNRF3 internalization and is required for Wnt inhibition in the Spemann organizer., Chang LS, Kim M, Glinka A, Reinhard C, Niehrs C., Elife. January 14, 2020; 9                                                                                               

Modeling Bainbridge-Ropers Syndrome in Xenopus laevis Embryos., Lichtig H, Artamonov A, Polevoy H, Reid CD, Bielas SL, Frank D., Front Physiol. January 1, 2020; 11 75.                    

The Stemness Gene Mex3A Is a Key Regulator of Neuroblast Proliferation During Neurogenesis., Naef V, De Sarlo M, Testa G, Corsinovi D, Azzarelli R, Borello U, Ori M., Front Cell Dev Biol. January 1, 2020; 8 549533.            

Pinhead signaling regulates mesoderm heterogeneity via FGF receptor-dependent pathway., Ossipova O, Itoh K, Radu A, Ezan J, Sokol SY., Development. January 1, 2020;                                       

Trpc1 as the Missing Link Between the Bmp and Ca2+ Signalling Pathways During Neural Specification in Amphibians., Néant I, Leung HC, Webb SE, Miller AL, Miller AL, Moreau M, Leclerc C., Sci Rep. November 5, 2019; 9 (1): 16049.                                    

Lef1 regulates caveolin expression and caveolin dependent endocytosis, a process necessary for Wnt5a/Ror2 signaling during Xenopus gastrulation., Puzik K, Tonnier V, Opper I, Eckert A, Zhou L, Kratzer MC, Noble FL, Nienhaus GU, Gradl D., Sci Rep. October 30, 2019; 9 (1): 15645.                          

Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals., Gentsch GE, Spruce T, Owens NDL, Smith JC., Nat Commun. September 19, 2019; 10 (1): 4269.                                        

PTK7 proteolytic fragment proteins function during early Xenopus development., Lichtig H, Cohen Y, Bin-Nun N, Golubkov V, Frank D., Dev Biol. September 1, 2019; 453 (1): 48-55.        

Cdc2-like kinase 2 (Clk2) promotes early neural development in Xenopus embryos., Virgirinia RP, Jahan N, Okada M, Takebayashi-Suzuki K, Yoshida H, Nakamura M, Akao H, Yoshimoto Y, Fatchiyah F, Ueno N, Suzuki A., Dev Growth Differ. August 1, 2019; 61 (6): 365-377.                              

Involvement of Myt1 kinase in the G2 phase of the first cell cycle in Xenopus laevis., Yoshitome S, Aiba Y, Yuge M, Furuno N, Watanabe M, Nakajo N., Biochem Biophys Res Commun. July 12, 2019; 515 (1): 139-144.      

Retinoic acid signaling reduction recapitulates the effects of alcohol on embryo size., Shukrun N, Shabtai Y, Pillemer G, Fainsod A., Genesis. July 1, 2019; 57 (7-8): e23284.                

What are the roles of retinoids, other morphogens, and Hox genes in setting up the vertebrate body axis?, Durston AJ., Genesis. July 1, 2019; 57 (7-8): e23296.            

The Spatiotemporal Control of Zygotic Genome Activation., Gentsch GE, Owens NDL, Smith JC., iScience. June 28, 2019; 16 485-498.                          

Using a continuum model to decipher the mechanics of embryonic tissue spreading from time-lapse image sequences: An approximate Bayesian computation approach., Stepien TL, Lynch HE, Yancey SX, Dempsey L, Davidson LA., PLoS One. June 19, 2019; 14 (6): e0218021.                  

Spatiotemporal Patterning of Zygotic Genome Activation in a Model Vertebrate Embryo., Chen H, Einstein LC, Little SC, Good MC., Dev Cell. June 17, 2019; 49 (6): 852-866.e7.                                    

Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD, Blitz IL, Coley M, Cheung J, Sudou N, Taira M, Cho KWY., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.                          

Evolution of the Rho guanine nucleotide exchange factors Kalirin and Trio and their gene expression in Xenopus development., Kratzer MC, England L, Apel D, Hassel M, Borchers A., Gene Expr Patterns. June 1, 2019; 32 18-27.                              

Barhl2 maintains T cell factors as repressors and thereby switches off the Wnt/β-Catenin response driving Spemann organizer formation., Sena E, Rocques N, Borday C, Muhamad Amin HS, Parain K, Sitbon D, Chesneau A, Durand BC., Development. May 22, 2019; 146 (10):                                             

A deficiency in SUMOylation activity disrupts multiple pathways leading to neural tube and heart defects in Xenopus embryos., Bertke MM, Dubiak KM, Cronin L, Zeng E, Huber PW., BMC Genomics. May 17, 2019; 20 (1): 386.              

Characterization of Xenopus laevis guanine deaminase reveals new insights for its expression and function in the embryonic kidney., Slater PG, Cammarata GM, Monahan C, Bowers JT, Yan O, Lee S, Lowery LA., Dev Dyn. April 1, 2019; 248 (4): 296-305.        

Developmental expression of three prmt genes in Xenopus., Wang CD, Wang CD, Wang CD, Guo XF, Wong TCB, Wang H, Qi XF, Cai DQ, Deng Y, Zhao H., Zool Res. March 18, 2019;                                           

Leukemia inhibitory factor signaling in Xenopus embryo: Insights from gain of function analysis and dominant negative mutant of the receptor., Jalvy S, Veschambre P, Fédou S, Rezvani HR, Thézé N, Thiébaud P., Dev Biol. March 15, 2019; 447 (2): 200-213.                                  

Nucleotide receptor P2RY4 is required for head formation via induction and maintenance of head organizer in Xenopus laevis., Harata A, Hirakawa M, Sakuma T, Yamamoto T, Hashimoto C., Dev Growth Differ. February 1, 2019; 61 (2): 186-197.                                

Analysis of Cell Fate Commitment in Xenopus Embryos., Moody SA., Cold Spring Harb Protoc. January 2, 2019; 2019 (1):


Wolf-Hirschhorn Syndrome-Associated Genes Are Enriched in Motile Neural Crest Cells and Affect Craniofacial Development in Xenopus laevis., Mills A, Bearce E, Cella R, Kim SW, Selig M, Lee S, Lowery LA., Front Physiol. January 1, 2019; 10 431.                                          

Transcriptome analysis of regeneration during Xenopus laevis experimental twinning., Sosa EA, Moriyama Y, Ding Y, Tejeda-Muñoz N, Colozza G, De Robertis EM., Int J Dev Biol. January 1, 2019; 63 (6-7): 301-309.

Comparative Embryonic Spatio-Temporal Expression Profile Map of the Xenopus P2X Receptor Family., Blanchard C, Boué-Grabot E, Massé K., Front Cell Neurosci. January 1, 2019; 13 340.                    

A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells., Buitrago-Delgado E, Schock EN, Nordin K, LaBonne C., Dev Biol. December 15, 2018; 444 (2): 50-61.                

The RhoGEF protein Plekhg5 regulates apical constriction of bottle cells during gastrulation., Popov IK, Ray HJ, Skoglund P, Keller R, Chang C., Development. December 12, 2018; 145 (24):             

Physiological effects of KDM5C on neural crest migration and eye formation during vertebrate development., Kim Y, Jeong Y, Kwon K, Ismail T, Lee HK, Kim C, Park JW, Kwon OS, Kang BS, Lee DS, Park TJ, Kwon T, Lee HS., Epigenetics Chromatin. December 6, 2018; 11 (1): 72.                

Expression of trpv channels during Xenopus laevis embryogenesis., Dong C, Paudel S, Amoh NY, Saha MS., Gene Expr Patterns. December 1, 2018; 30 64-70.          

Stress-generating tissue deformations in Xenopus embryos: Long-range gradients and local cell displacements., Evstifeeva AY, Luchinskaia NN, Beloussov LV., Biosystems. November 1, 2018; 173 52-64.

Identification of retinal homeobox (rax) gene-dependent genes by a microarray approach: The DNA endoglycosylase neil3 is a major downstream component of the rax genetic pathway., Pan Y, Kelly LE, El-Hodiri HM., Dev Dyn. November 1, 2018; 247 (11): 1199-1210.                            

Calcium Signaling in Vertebrate Development and Its Role in Disease., Paudel S, Sindelar R, Saha M., Int J Mol Sci. October 30, 2018; 19 (11):     

Fam46a regulates BMP-dependent pre-placodal ectoderm differentiation in Xenopus., Watanabe T, Yamamoto T, Tsukano K, Hirano S, Horikawa A, Michiue T., Development. October 26, 2018; 145 (20):                                     

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