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Summary Stage Literature (2200) Attributions Wiki
XB-STAGE-7

Papers associated with gastrula stage

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R-spondins are BMP receptor antagonists in Xenopus early embryonic development., Lee H, Lee H, Seidl C, Sun R, Glinka A, Niehrs C., Nat Commun. November 4, 2020; 11 (1): 5570.                                            

Non-junctional role of Cadherin3 in cell migration and contact inhibition of locomotion via domain-dependent, opposing regulation of Rac1., Ichikawa T, Stuckenholz C, Davidson LA, Davidson LA., Sci Rep. October 15, 2020; 10 (1): 17326.          

Foxd4l1.1 negatively regulates transcription of neural repressor ventx1.1 during neuroectoderm formation in Xenopus embryos., Kumar S, Kumar S, Umair Z, Kumar V, Kumar S, Lee U, Kim J., Sci Rep. October 8, 2020; 10 (1): 16780.            

TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis., Chen M, Amado N, Tan J, Reis A, Ge M, Abreu JG, He X., Elife. September 14, 2020; 9                                                                                           

Pinhead signaling regulates mesoderm heterogeneity via the FGF receptor-dependent pathway., Ossipova O, Itoh K, Radu A, Ezan J, Sokol SY., Development. September 11, 2020; 147 (17):                 

Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S, Chaturvedi P, Rankin SA, Rankin SA, Fish MB, Wlizla M, Paraiso KD, MacDonald M, Chen X, Weirauch MT, Blitz IL, Cho KW, Zorn AM., Elife. September 7, 2020; 9                           

Brachyury in the gastrula of basal vertebrates., Bruce AEE, Winklbauer R., Mech Dev. September 1, 2020; 163 103625.                  

Sprouty2 regulates positioning of retinal progenitors through suppressing the Ras/Raf/MAPK pathway., Sun J, Yoon J, Lee M, Hwang YS, Daar IO., Sci Rep. August 13, 2020; 10 (1): 13752.                      

Mcl1 protein levels and Caspase-7 executioner protease control axial organizer cells survival., Sena E, Bou-Rouphael J, Rocques N, Carron-Homo C, Durand BC., Dev Dyn. July 1, 2020; 249 (7): 847-866.              

Quantitative capillary zone electrophoresis-mass spectrometry reveals the N-glycome developmental plan during vertebrate embryogenesis., Qu Y, Dubiak KM, Peuchen EH, Champion MM, Zhang Z, Hebert AS, Wright S, Coon JJ, Huber PW, Dovichi NJ., Mol Omics. June 15, 2020; 16 (3): 210-220.

Natural size variation among embryos leads to the corresponding scaling in gene expression., Leibovich A, Edri T, Klein SL, Moody SA, Fainsod A., Dev Biol. June 15, 2020; 462 (2): 165-179.                    

The FOXJ1 target Cfap206 is required for sperm motility, mucociliary clearance of the airways and brain development., Beckers A, Adis C, Schuster-Gossler K, Tveriakhina L, Ott T, Fuhl F, Hegermann J, Boldt K, Serth K, Rachev E, Alten L, Kremmer E, Ueffing M, Blum M, Gossler A., Development. June 15, 2020; 147 (21):                                       

Chromatin accessibility and histone acetylation in the regulation of competence in early development., Esmaeili M, Blythe SA, Tobias JW, Zhang K, Yang J, Klein PS., Dev Biol. June 1, 2020; 462 (1): 20-35.                

Tbx2 mediates dorsal patterning and germ layer suppression through inhibition of BMP/GDF and Activin/Nodal signaling., Reich S, Kayastha P, Teegala S, Weinstein DC., BMC Mol Cell Biol. May 28, 2020; 21 (1): 39.              

A comparative analysis of fibroblast growth factor receptor signalling during Xenopus development., Brunsdon H, Isaacs HV., Biol Cell. May 1, 2020; 112 (5): 127-139.                

14-3-3 targets keratin intermediate filaments to mechanically sensitive cell-cell contacts., Mariani RA, Paranjpe S, Dobrowolski R, Weber GF., Mol Biol Cell. April 15, 2020; 31 (9): 930-943.              

A direct role for SNX9 in the biogenesis of filopodia., Jarsch IK, Gadsby JR, Nuccitelli A, Mason J, Shimo H, Pilloux L, Marzook B, Mulvey CM, Dobramysl U, Bradshaw CR, Lilley KS, Hayward RD, Vaughan TJ, Dobson CL, Gallop JL., J Cell Biol. April 6, 2020; 219 (4):               

Mechanical Stress Regulates Epithelial Tissue Integrity and Stiffness through the FGFR/Erk2 Signaling Pathway during Embryogenesis., Kinoshita N, Hashimoto Y, Yasue N, Suzuki M, Suzuki M, Cristea IM, Ueno N., Cell Rep. March 17, 2020; 30 (11): 3875-3888.e3.                

The secreted BMP antagonist ERFE is required for the development of a functional circulatory system in Xenopus., Melchert J, Henningfeld KA, Richts S, Lingner T, Jonigk D, Pieler T., Dev Biol. March 15, 2020; 459 (2): 138-148.                                

CFAP43 modulates ciliary beating in mouse and Xenopus., Rachev E, Schuster-Gossler K, Fuhl F, Ott T, Tveriakhina L, Beckers A, Hegermann J, Boldt K, Mai M, Kremmer E, Ueffing M, Blum M, Gossler A., Dev Biol. March 15, 2020; 459 (2): 109-125.                                                                    

The regulatory proteins DSCR6 and Ezh2 oppositely regulate Stat3 transcriptional activity in mesoderm patterning during Xenopus development., Loreti M, Shi DL, Carron C., J Biol Chem. February 28, 2020; 295 (9): 2724-2735.                

An in vivo brain-bacteria interface: the developing brain as a key regulator of innate immunity., Herrera-Rincon C, Paré JF, Martyniuk CJ, Jannetty SK, Harrison C, Fischer A, Dinis A, Keshari V, Novak R, Levin M., NPJ Regen Med. February 4, 2020; 5 2.                        

Role of TrkA signaling during tadpole tail regeneration and early embryonic development in Xenopus laevis., Iimura A, Nishida E, Kusakabe M., Genes Cells. February 1, 2020; 25 (2): 86-99.                

The tumor suppressor PTPRK promotes ZNRF3 internalization and is required for Wnt inhibition in the Spemann organizer., Chang LS, Kim M, Glinka A, Reinhard C, Niehrs C., Elife. January 14, 2020; 9                                                                                               

Mesoderm and endoderm internalization in the Xenopus gastrula., Winklbauer R., Curr Top Dev Biol. January 1, 2020; 136 243-270.

Modeling Bainbridge-Ropers Syndrome in Xenopus laevis Embryos., Lichtig H, Artamonov A, Polevoy H, Reid CD, Bielas SL, Frank D., Front Physiol. January 1, 2020; 11 75.                    

Tunicate gastrulation., Winkley KM, Kourakis MJ, DeTomaso AW, Veeman MT, Smith WC., Curr Top Dev Biol. January 1, 2020; 136 219-242.

Effect of nano-encapsulation of β-carotene on Xenopus laevis embryos development (FETAX)., Battistoni M, Bacchetta R, Di Renzo F, Metruccio F, Menegola E., Toxicol Rep. January 1, 2020; 7 510-519.                  

Pinhead signaling regulates mesoderm heterogeneity via FGF receptor-dependent pathway., Ossipova O, Itoh K, Radu A, Ezan J, Sokol SY., Development. January 1, 2020;                                       

Nucleoplasmin is a limiting component in the scaling of nuclear size with cytoplasmic volume., Chen P, Tomschik M, Nelson KM, Oakey J, Gatlin JC, Gatlin JC, Levy DL., J Cell Biol. December 2, 2019; 218 (12): 4063-4078.            

Trpc1 as the Missing Link Between the Bmp and Ca2+ Signalling Pathways During Neural Specification in Amphibians., Néant I, Leung HC, Webb SE, Miller AL, Miller AL, Moreau M, Leclerc C., Sci Rep. November 5, 2019; 9 (1): 16049.                                    

Polybrominated Diphenylether (DE-71) Exposure Skews Phenotypic Sex Ratio, and Alters Steroid Hormone Levels and Steroidogenic Enzyme Activities in Juvenile Silurana tropicalis., Fort DJ, Mathis M, Fort C, Fort TD, Guiney PD, Weeks JA., Toxicol Sci. November 1, 2019; 172 (1): 63-74.

Lef1 regulates caveolin expression and caveolin dependent endocytosis, a process necessary for Wnt5a/Ror2 signaling during Xenopus gastrulation., Puzik K, Tonnier V, Opper I, Eckert A, Zhou L, Kratzer MC, Noble FL, Nienhaus GU, Gradl D., Sci Rep. October 30, 2019; 9 (1): 15645.                          

Bioinformatics Screening of Genes Specific for Well-Regenerating Vertebrates Reveals c-answer, a Regulator of Brain Development and Regeneration., Korotkova DD, Lyubetsky VA, Ivanova AS, Rubanov LI, Seliverstov AV, Zverkov OA, Martynova NY, Nesterenko AM, Tereshina MB, Peshkin L, Zaraisky AG., Cell Rep. October 22, 2019; 29 (4): 1027-1040.e6.                              

Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals., Gentsch GE, Spruce T, Owens NDL, Smith JC., Nat Commun. September 19, 2019; 10 (1): 4269.                                        

BAP1 regulates epigenetic switch from pluripotency to differentiation in developmental lineages giving rise to BAP1-mutant cancers., Kuznetsov JN, Aguero TH, Owens DA, Kurtenbach S, Field MG, Durante MA, Rodriguez DA, King ML, Harbour JW., Sci Adv. September 18, 2019; 5 (9): eaax1738.        

PTK7 proteolytic fragment proteins function during early Xenopus development., Lichtig H, Cohen Y, Bin-Nun N, Golubkov V, Frank D., Dev Biol. September 1, 2019; 453 (1): 48-55.        

Integration of Wnt and FGF signaling in the Xenopus gastrula at TCF and Ets binding sites shows the importance of short-range repression by TCF in patterning the marginal zone., Kjolby RAS, Truchado-Garcia M, Iruvanti S, Harland RM., Development. August 9, 2019; 146 (15):                           

SGEF forms a complex with Scribble and Dlg1 and regulates epithelial junctions and contractility., Awadia S, Huq F, Arnold TR, Goicoechea SM, Sun YJ, Hou T, Kreider-Letterman G, Massimi P, Banks L, Fuentes EJ, Miller AL, Miller AL, Garcia-Mata R., J Cell Biol. August 5, 2019; 218 (8): 2699-2725.                                                  

Evolution of cis-regulatory modules for the head organizer gene goosecoid in chordates: comparisons between Branchiostoma and Xenopus., Yasuoka Y, Tando Y, Kubokawa K, Taira M., Zoological Lett. August 2, 2019; 5 27.                

Cdc2-like kinase 2 (Clk2) promotes early neural development in Xenopus embryos., Virgirinia RP, Jahan N, Okada M, Takebayashi-Suzuki K, Yoshida H, Nakamura M, Akao H, Yoshimoto Y, Fatchiyah F, Ueno N, Suzuki A., Dev Growth Differ. August 1, 2019; 61 (6): 365-377.                              

Histone H2B monoubiquitination regulates heart development via epigenetic control of cilia motility., Robson A, Makova SZ, Barish S, Zaidi S, Mehta S, Drozd J, Jin SC, Gelb BD, Seidman CE, Chung WK, Lifton RP, Khokha MK, Brueckner M., Proc Natl Acad Sci U S A. July 9, 2019; 116 (28): 14049-14054.                                  

Retinoic acid signaling reduction recapitulates the effects of alcohol on embryo size., Shukrun N, Shabtai Y, Pillemer G, Fainsod A., Genesis. July 1, 2019; 57 (7-8): e23284.                

The Spatiotemporal Control of Zygotic Genome Activation., Gentsch GE, Owens NDL, Smith JC., iScience. June 28, 2019; 16 485-498.                          

Using a continuum model to decipher the mechanics of embryonic tissue spreading from time-lapse image sequences: An approximate Bayesian computation approach., Stepien TL, Lynch HE, Yancey SX, Dempsey L, Davidson LA., PLoS One. June 19, 2019; 14 (6): e0218021.                  

Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD, Blitz IL, Coley M, Cheung J, Sudou N, Taira M, Cho KWY., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.                          

Evolution of the Rho guanine nucleotide exchange factors Kalirin and Trio and their gene expression in Xenopus development., Kratzer MC, England L, Apel D, Hassel M, Borchers A., Gene Expr Patterns. June 1, 2019; 32 18-27.                              

Loss of function of Kmt2d, a gene mutated in Kabuki syndrome, affects heart development in Xenopus laevis., Schwenty-Lara J, Nürnberger A, Borchers A., Dev Dyn. June 1, 2019; 248 (6): 465-476.                  

Mechanical strain, novel genes and evolutionary insights: news from the frog left-right organizer., Blum M, Ott T., Curr Opin Genet Dev. June 1, 2019; 56 8-14.      

Preserving Genome Integrity During the Early Embryonic DNA Replication Cycles., Kermi C, Aze A, Maiorano D., Genes (Basel). May 24, 2019; 10 (5):           

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