Papers associated with primary germ layer (and tbxt)

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	Xbra modulates the activity of linker region phosphorylated Smad1 during Xenopus development., Kumar S., Sci Rep. April 18, 2024; 14 (1): 8922.
	Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae., Goutam RS., Mol Cells. April 1, 2024; 47 (4): 100058.
	Competence for neural crest induction is controlled by hydrostatic pressure through Yap., Alasaadi DN., Nat Cell Biol. March 18, 2024;
	Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer., Baxi AB., Proc Natl Acad Sci U S A. February 6, 2024; 121 (6): e2311625121.
	ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation., Wang C., EMBO Rep. February 1, 2024; 25 (2): 646-671.
	Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues., Eroshkin FM., Int J Mol Sci. January 10, 2024; 25 (2):
	Mitochondrial leak metabolism induces the Spemann-Mangold Organizer via Hif-1α in Xenopus., MacColl Garfinkel A., Dev Cell. November 20, 2023; 58 (22): 2597-2613.e4.
	Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum., Raghavan R., BMC Ecol Evol. October 27, 2023; 23 (1): 63.
	Purine Biosynthesis Pathways Are Required for Myogenesis in Xenopus laevis., Duperray M., Cells. September 28, 2023; 12 (19):
	The complete dorsal structure is formed from only the blastocoel roof of Xenopus blastula: insight into the gastrulation movement evolutionarily conserved among chordates., Sato Y., Dev Genes Evol. June 1, 2023; 233 (1): 1-12.
	RAF1 deficiency causes a lethal syndrome that underscores RTK signaling during embryogenesis., Wong S., EMBO Mol Med. May 8, 2023; 15 (5): e17078.
	OTUD3: A Lys6 and Lys63 specific deubiquitinase in early vertebrate development., Job F., Biochim Biophys Acta Gene Regul Mech. March 1, 2023; 1866 (1): 194901.
	Recognition of H2AK119ub plays an important role in RSF1-regulated early Xenopus development., Parast SM., Front Cell Dev Biol. January 1, 2023; 11 1168643.
	Regulation of gene expression downstream of a novel Fgf/Erk pathway during Xenopus development., Cowell LM., PLoS One. January 1, 2023; 18 (10): e0286040.
	Reconstructing gene regulatory networks of biological function using differential equations of multilayer perceptrons., Mao G., BMC Bioinformatics. November 24, 2022; 23 (1): 503.
	Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E., Nat Commun. November 5, 2022; 13 (1): 6681.
	Engagement of Foxh1 in chromatin regulation revealed by protein interactome analyses., Zhou JJ., Dev Growth Differ. August 1, 2022; 64 (6): 297-305.
	HMCES modulates the transcriptional regulation of nodal/activin and BMP signaling in mESCs., Liang T., Cell Rep. July 12, 2022; 40 (2): 111038.
	Uncovering the mesendoderm gene regulatory network through multi-omic data integration., Jansen C., Cell Rep. February 15, 2022; 38 (7): 110364.
	Xbp1 and Brachyury establish an evolutionarily conserved subcircuit of the notochord gene regulatory network., Wu Y., Elife. January 20, 2022; 11
	FGF-mediated establishment of left-right asymmetry requires Rab7 function in the dorsal mesoderm in Xenopus., Kreis J., Front Cell Dev Biol. January 1, 2022; 10 981762.
	Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos., Umair Z., Mol Cells. October 31, 2021; 44 (10): 723-735.
	The enpp4 ectonucleotidase regulates kidney patterning signalling networks in Xenopus embryos., Massé K., Commun Biol. October 7, 2021; 4 (1): 1158.
	Huntingtin CAG expansion impairs germ layer patterning in synthetic human 2D gastruloids through polarity defects., Galgoczi S., Development. October 1, 2021; 148 (19):
	Tril dampens Nodal signaling through Pellino2- and Traf6-mediated activation of Nedd4l., Kim HS., Proc Natl Acad Sci U S A. September 7, 2021; 118 (36):
	A systemic cell cycle block impacts stage-specific histone modification profiles during Xenopus embryogenesis., Pokrovsky D., PLoS Biol. September 1, 2021; 19 (9): e3001377.
	Rab7 is required for mesoderm patterning and gastrulation in Xenopus., Kreis J., Biol Open. July 15, 2021; 10 (7):
	BMP signaling is enhanced intracellularly by FHL3 controlling WNT-dependent spatiotemporal emergence of the neural crest., Alkobtawi M., Cell Rep. June 22, 2021; 35 (12): 109289.
	The cytokine FAM3B/PANDER is an FGFR ligand that promotes posterior development in Xenopus., Zhang F., Proc Natl Acad Sci U S A. May 18, 2021; 118 (20):
	Kindlin2 regulates neural crest specification via integrin-independent regulation of the FGF signaling pathway., Wang H., Development. May 15, 2021; 148 (10):
	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR., EMBO J. May 3, 2021; 40 (9): e104913.
	Furry is required for cell movements during gastrulation and functionally interacts with NDR1., Cervino AS., Sci Rep. March 23, 2021; 11 (1): 6607.
	Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage., Castro Colabianchi AM., Biol Open. February 25, 2021; 10 (2):
	Modeling endoderm development and disease in Xenopus., Edwards NA., Curr Top Dev Biol. January 1, 2021; 145 61-90.
	Evolution of Somite Compartmentalization: A View From Xenopus., Della Gaspera B., Front Cell Dev Biol. January 1, 2021; 9 790847.
	Generation of a FOXH1 homozygous knockout human embryonic stem cell line by CRISPR/Cas9 system., Zhang T., Stem Cell Res. December 10, 2020; 50 102121.
	Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos., Umair Z., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
	Foxd4l1.1 negatively regulates transcription of neural repressor ventx1.1 during neuroectoderm formation in Xenopus embryos., Kumar S, Kumar S., Sci Rep. October 8, 2020; 10 (1): 16780.
	TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis., Chen M., Elife. September 14, 2020; 9
	Pinhead signaling regulates mesoderm heterogeneity via the FGF receptor-dependent pathway., Ossipova O., Development. September 11, 2020; 147 (17):
	Brachyury in the gastrula of basal vertebrates., Bruce AEE., Mech Dev. September 1, 2020; 163 103625.
	Chromatin accessibility and histone acetylation in the regulation of competence in early development., Esmaeili M., Dev Biol. June 1, 2020; 462 (1): 20-35.
	Tbx2 mediates dorsal patterning and germ layer suppression through inhibition of BMP/GDF and Activin/Nodal signaling., Reich S., BMC Mol Cell Biol. May 28, 2020; 21 (1): 39.
	Rspo2 antagonizes FGF signaling during vertebrate mesoderm formation and patterning., Reis AH., Development. May 27, 2020; 147 (10):
	Heparan sulfate proteoglycans regulate BMP signalling during neural crest induction., Pegge J., Dev Biol. April 15, 2020; 460 (2): 108-114.
	FAM46B is a prokaryotic-like cytoplasmic poly(A) polymerase essential in human embryonic stem cells., Hu JL., Nucleic Acids Res. March 18, 2020; 48 (5): 2733-2748.
	Pinhead signaling regulates mesoderm heterogeneity via FGF receptor-dependent pathway., Ossipova O., Development. January 1, 2020;
	Repression of Inappropriate Gene Expression in the Vertebrate Embryonic Ectoderm., Reich S., Genes (Basel). November 6, 2019; 10 (11):
	Maternal pluripotency factors initiate extensive chromatin remodelling to predefine first response to inductive signals., Gentsch GE., Nat Commun. September 19, 2019; 10 (1): 4269.
	BAP1 regulates epigenetic switch from pluripotency to differentiation in developmental lineages giving rise to BAP1-mutant cancers., Kuznetsov JN., Sci Adv. September 18, 2019; 5 (9): eaax1738.

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