James Hanken - Publications

Publications (21)

XB-PERS-732

Publications By James Hanken

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Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs., Bredeson JV, Mudd AB, Medina-Ruiz S, Mitros T, Smith OK, Miller KE, Lyons JB, Batra SS, Park J, Berkoff KC, Plott C, Grimwood J, Schmutz J, Aguirre-Figueroa G, Khokha MK, Lane M, Philipp I, Laslo M, Hanken J, Kerdivel G, Buisine N, Sachs LM, Buchholz DR, Kwon T, Smith-Parker H, Gridi-Papp M, Ryan MJ, Denton RD, Malone JH, Wallingford JB, Straight AF, Heald R, Hockemeyer D, Harland RM, Rokhsar DS., Nat Commun. January 17, 2024; 15 (1): 579.
Environmental Oxygen Exposure Allows for the Evolution of Interdigital Cell Death in Limb Patterning., Cordeiro IR, Kabashima K, Ochi H, Munakata K, Nishimori C, Laslo M, Hanken J, Tanaka M., Dev Cell. July 22, 2019; 50 (2): 155-166.e4.
Evolutionary innovation and conservation in the embryonic derivation of the vertebrate skull., Piekarski N, Gross JB, Hanken J., Nat Commun. December 1, 2014; 5 5661.
Developmental origins of a novel gut morphology in frogs., Bloom S, Ledon-Rettig C, Infante C, Everly A, Hanken J, Nascone-Yoder N., Evol Dev. May 1, 2013; 15 (3): 213-23.
Regulatory elements of Xenopus col2a1 drive cartilaginous gene expression in transgenic frogs., Kerney R, Hall BK, Hanken J., Int J Dev Biol. January 1, 2010; 54 (1): 141-50.
Early cranial patterning in the direct-developing frog Eleutherodactylus coqui revealed through gene expression., Kerney R, Gross JB, Hanken J., Evol Dev. January 1, 2010; 12 (4): 373-82.
Segmentation of the vertebrate skull: neural-crest derivation of adult cartilages in the clawed frog, Xenopus laevis., Gross JB, Hanken J., Integr Comp Biol. November 1, 2008; 48 (5): 681-96.
Concealed weapons: erectile claws in African frogs., Blackburn DC, Hanken J, Jenkins FA., Biol Lett. August 23, 2008; 4 (4): 355-7.
Review of fate-mapping studies of osteogenic cranial neural crest in vertebrates., Gross JB, Hanken J., Dev Biol. May 15, 2008; 317 (2): 389-400.
Gene expression reveals unique skeletal patterning in the limb of the direct-developing frog, Eleutherodactylus coqui., Kerney R, Hanken J., Evol Dev. January 1, 2008; 10 (4): 439-48.
Cranial ontogeny in Philautus silus (Anura: Ranidae: Rhacophorinae) reveals few similarities with other direct-developing anurans., Kerney R, Meegaskumbura M, Manamendra-Arachchi K, Hanken J., J Morphol. August 1, 2007; 268 (8): 715-25.
Runx2 is essential for larval hyobranchial cartilage formation in Xenopus laevis., Kerney R, Gross JB, Hanken J., Dev Dyn. June 1, 2007; 236 (6): 1650-62.
Use of a ROSA26:GFP transgenic line for long-term Xenopus fate-mapping studies., Gross JB, Hanken J, Oglesby E, Marsh-Armstrong N., J Anat. September 1, 2006; 209 (3): 401-13.
Cranial neural crest contributes to the bony skull vault in adult Xenopus laevis: insights from cell labeling studies., Gross JB, Hanken J., J Exp Zool B Mol Dev Evol. March 15, 2005; 304 (2): 169-76.
Use of fluorescent dextran conjugates as a long-term marker of osteogenic neural crest in frogs., Gross JB, Hanken J., Dev Dyn. May 1, 2004; 230 (1): 100-6.
Limb development in a "nonmodel" vertebrate, the direct-developing frog Eleutherodactylus coqui., Hanken J, Carl TF, Richardson MK, Olsson L, Schlosser G, Osabutey CK, Klymkowsky MW., J Exp Zool. December 15, 2001; 291 (4): 375-88.
Inhibition of neural crest migration in Xenopus using antisense slug RNA., Carl TF, Dufton C, Hanken J, Klymkowsky MW., Dev Biol. September 1, 1999; 213 (1): 101-15.
Limb development and evolution: a frog embryo with no apical ectodermal ridge (AER)., Richardson MK, Carl TF, Hanken J, Elinson RP, Cope C, Bagley P., J Anat. April 1, 1998; 192 ( Pt 3) 379-90.
Type II collagen distribution during cranial development in Xenopus laevis., Seufert DW, Hanken J, Klymkowsky MW., Anat Embryol (Berl). January 1, 1994; 189 (1): 81-9.
Skeletal development in Xenopus laevis (Anura: Pipidae)., Trueb L, Hanken J., J Morphol. October 1, 1992; 214 (1): 1-41.
Whole-mount staining of Xenopus and other vertebrates., Klymkowsky MW, Hanken J., Methods Cell Biol. January 1, 1991; 36 419-41.

Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs., Bredeson JV, Mudd AB, Medina-Ruiz S, Mitros T, Smith OK, Miller KE, Lyons JB, Batra SS, Park J, Berkoff KC, Plott C, Grimwood J, Schmutz J, Aguirre-Figueroa G, Khokha MK, Lane M, Philipp I, Laslo M, Hanken J, Kerdivel G, Buisine N, Sachs LM, Buchholz DR, Kwon T, Smith-Parker H, Gridi-Papp M, Ryan MJ, Denton RD, Malone JH, Wallingford JB, Straight AF, Heald R, Hockemeyer D, Harland RM, Rokhsar DS., Nat Commun. January 17, 2024; 15 (1): 579.

Environmental Oxygen Exposure Allows for the Evolution of Interdigital Cell Death in Limb Patterning., Cordeiro IR, Kabashima K, Ochi H, Munakata K, Nishimori C, Laslo M, Hanken J, Tanaka M., Dev Cell. July 22, 2019; 50 (2): 155-166.e4.

Evolutionary innovation and conservation in the embryonic derivation of the vertebrate skull., Piekarski N, Gross JB, Hanken J., Nat Commun. December 1, 2014; 5 5661.

Developmental origins of a novel gut morphology in frogs., Bloom S, Ledon-Rettig C, Infante C, Everly A, Hanken J, Nascone-Yoder N., Evol Dev. May 1, 2013; 15 (3): 213-23.

Regulatory elements of Xenopus col2a1 drive cartilaginous gene expression in transgenic frogs., Kerney R, Hall BK, Hanken J., Int J Dev Biol. January 1, 2010; 54 (1): 141-50.

Early cranial patterning in the direct-developing frog Eleutherodactylus coqui revealed through gene expression., Kerney R, Gross JB, Hanken J., Evol Dev. January 1, 2010; 12 (4): 373-82.

Segmentation of the vertebrate skull: neural-crest derivation of adult cartilages in the clawed frog, Xenopus laevis., Gross JB, Hanken J., Integr Comp Biol. November 1, 2008; 48 (5): 681-96.

Concealed weapons: erectile claws in African frogs., Blackburn DC, Hanken J, Jenkins FA., Biol Lett. August 23, 2008; 4 (4): 355-7.

Review of fate-mapping studies of osteogenic cranial neural crest in vertebrates., Gross JB, Hanken J., Dev Biol. May 15, 2008; 317 (2): 389-400.

Gene expression reveals unique skeletal patterning in the limb of the direct-developing frog, Eleutherodactylus coqui., Kerney R, Hanken J., Evol Dev. January 1, 2008; 10 (4): 439-48.

Cranial ontogeny in Philautus silus (Anura: Ranidae: Rhacophorinae) reveals few similarities with other direct-developing anurans., Kerney R, Meegaskumbura M, Manamendra-Arachchi K, Hanken J., J Morphol. August 1, 2007; 268 (8): 715-25.

Runx2 is essential for larval hyobranchial cartilage formation in Xenopus laevis., Kerney R, Gross JB, Hanken J., Dev Dyn. June 1, 2007; 236 (6): 1650-62.

Use of a ROSA26:GFP transgenic line for long-term Xenopus fate-mapping studies., Gross JB, Hanken J, Oglesby E, Marsh-Armstrong N., J Anat. September 1, 2006; 209 (3): 401-13.

Cranial neural crest contributes to the bony skull vault in adult Xenopus laevis: insights from cell labeling studies., Gross JB, Hanken J., J Exp Zool B Mol Dev Evol. March 15, 2005; 304 (2): 169-76.

Use of fluorescent dextran conjugates as a long-term marker of osteogenic neural crest in frogs., Gross JB, Hanken J., Dev Dyn. May 1, 2004; 230 (1): 100-6.

Limb development in a "nonmodel" vertebrate, the direct-developing frog Eleutherodactylus coqui., Hanken J, Carl TF, Richardson MK, Olsson L, Schlosser G, Osabutey CK, Klymkowsky MW., J Exp Zool. December 15, 2001; 291 (4): 375-88.

Inhibition of neural crest migration in Xenopus using antisense slug RNA., Carl TF, Dufton C, Hanken J, Klymkowsky MW., Dev Biol. September 1, 1999; 213 (1): 101-15.

Limb development and evolution: a frog embryo with no apical ectodermal ridge (AER)., Richardson MK, Carl TF, Hanken J, Elinson RP, Cope C, Bagley P., J Anat. April 1, 1998; 192 ( Pt 3) 379-90.

Type II collagen distribution during cranial development in Xenopus laevis., Seufert DW, Hanken J, Klymkowsky MW., Anat Embryol (Berl). January 1, 1994; 189 (1): 81-9.

Skeletal development in Xenopus laevis (Anura: Pipidae)., Trueb L, Hanken J., J Morphol. October 1, 1992; 214 (1): 1-41.

Whole-mount staining of Xenopus and other vertebrates., Klymkowsky MW, Hanken J., Methods Cell Biol. January 1, 1991; 36 419-41.

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