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Summary Expression Phenotypes Gene Literature (174) GO Terms (10) Nucleotides (88) Proteins (45) Interactants (552) Wiki
XB-GENEPAGE-487473

Papers associated with nodal2



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Transmembrane protein 150b attenuates BMP signaling in the Xenopus organizer., Keum BR, Yeo I, Koo Y, Han W, Choi SC, Kim GH, Han JK., J Cell Physiol. August 1, 2023; 238 (8): 1850-1866.                        

Uncovering the mesendoderm gene regulatory network through multi-omic data integration., Jansen C, Paraiso KD, Zhou JJ, Blitz IL, Fish MB, Charney RM, Cho JS, Yasuoka Y, Sudou N, Bright AR, Wlizla M, Veenstra GJC, Taira M, Zorn AM, Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.                            

Tril dampens Nodal signaling through Pellino2- and Traf6-mediated activation of Nedd4l., Kim HS, Green YS, Xie Y, Christian JL., Proc Natl Acad Sci U S A. September 7, 2021; 118 (36):                       

Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage., Castro Colabianchi AM, Tavella MB, Boyadjián López LE, Rubinstein M, Franchini LF, López SL., Biol Open. February 25, 2021; 10 (2):                 

Transcriptional regulatory elements of hif1α in a distal locus of islet1 in Xenopus laevis., Miyakawa M, Katada T, Numa Y, Kinoshita T., Comp Biochem Physiol B Biochem Mol Biol. January 1, 2021; 255 110598.

Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S, Chaturvedi P, Rankin SA, Rankin SA, Fish MB, Wlizla M, Paraiso KD, MacDonald M, Chen X, Weirauch MT, Blitz IL, Cho KW, Zorn AM., Elife. September 7, 2020; 9                           

Subunit-specific effects of poricoic acid A on NMDA receptors., Lee J, Kim C, Yeom HD, Nguyen KVA, Eom S, Lee S, Jung JH, Lee JH, Kim SH, Kim IK, Lee JH, Lee JH., Pharmacol Rep. April 1, 2020; 72 (2): 472-480.

Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis., Ding Y, Colozza G, Sosa EA, Moriyama Y, Rundle S, Salwinski L, De Robertis EM., Proc Natl Acad Sci U S A. September 25, 2018; 115 (39): E9135-E9144.                    

Mechanical Strain Determines Cilia Length, Motility, and Planar Position in the Left-Right Organizer., Chien YH, Srinivasan S, Keller R, Kintner C., Dev Cell. May 7, 2018; 45 (3): 316-330.e4.              

A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL, Paraiso KD, Patrushev I, Chiu WTY, Cho KWY, Gilchrist MJ., Dev Biol. June 15, 2017; 426 (2): 409-417.        

Genome organization of the vg1 and nodal3 gene clusters in the allotetraploid frog Xenopus laevis., Suzuki A, Uno Y, Takahashi S, Grimwood J, Schmutz J, Mawaribuchi S, Yoshida H, Takebayashi-Suzuki K, Ito M, Matsuda Y, Rokhsar D, Taira M., Dev Biol. June 15, 2017; 426 (2): 236-244.            

A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM, Paraiso KD, Blitz IL, Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.    

Spemann organizer transcriptome induction by early beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis., Ding Y, Ploper D, Sosa EA, Colozza G, Moriyama Y, Benitez MD, Zhang K, Merkurjev D, De Robertis EM., Proc Natl Acad Sci U S A. April 11, 2017; 114 (15): E3081-E3090.                        

Genome evolution in the allotetraploid frog Xenopus laevis., Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS., Nature. October 20, 2016; 538 (7625): 336-343.                              

Gtpbp2 is a positive regulator of Wnt signaling and maintains low levels of the Wnt negative regulator Axin., Gillis WQ, Kirmizitas A, Iwasaki Y, Ki DH, Wyrick JM, Thomsen GH., Cell Commun Signal. August 2, 2016; 14 (1): 15.              

FoxH1 mediates a Grg4 and Smad2 dependent transcriptional switch in Nodal signaling during Xenopus mesoderm development., Reid CD, Steiner AB, Yaklichkin S, Lu Q, Wang S, Hennessy M, Kessler DS., Dev Biol. June 1, 2016; 414 (1): 34-44.                  

Noggin4 is a long-range inhibitor of Wnt8 signalling that regulates head development in Xenopus laevis., Eroshkin FM, Nesterenko AM, Borodulin AV, Martynova NY, Ermakova GV, Gyoeva FK, Orlov EE, Belogurov AA, Lukyanov KA, Bayramov AV, Zaraisky AG., Sci Rep. January 22, 2016; 6 23049.                                                            

Pou5f3.2-induced proliferative state of embryonic cells during gastrulation of Xenopus laevis embryo., Nishitani E, Li C, Lee J, Hotta H, Katayama Y, Yamaguchi M, Kinoshita T., Dev Growth Differ. December 1, 2015; 57 (9): 591-600.              

Direct regulation of siamois by VegT is required for axis formation in Xenopus embryo., Li HY, El Yakoubi W, Shi DL., Int J Dev Biol. January 1, 2015; 59 (10-12): 443-51.                          

The nitrate transporter MtNPF6.8 (MtNRT1.3) transports abscisic acid and mediates nitrate regulation of primary root growth in Medicago truncatula., Pellizzaro A, Clochard T, Cukier C, Bourdin C, Juchaux M, Montrichard F, Thany S, Raymond V, Planchet E, Limami AM, Morère-Le Paven MC., Plant Physiol. December 1, 2014; 166 (4): 2152-65.

Genome-wide view of TGFβ/Foxh1 regulation of the early mesendoderm program., Chiu WT, Charney Le R, Blitz IL, Fish MB, Li Y, Biesinger J, Xie X, Cho KW., Development. December 1, 2014; 141 (23): 4537-47.                                  

The splicing factor PQBP1 regulates mesodermal and neural development through FGF signaling., Iwasaki Y, Thomsen GH., Development. October 1, 2014; 141 (19): 3740-51.                                          

Two different network topologies yield bistability in models of mesoderm and anterior mesendoderm specification in amphibians., Brown LE, King JR, Loose M., J Theor Biol. July 21, 2014; 353 67-77.                    

GRIN2B mutations in West syndrome and intellectual disability with focal epilepsy., Lemke JR, Hendrickx R, Geider K, Laube B, Schwake M, Harvey RJ, James VM, Pepler A, Steiner I, Hörtnagel K, Neidhardt J, Ruf S, Wolff M, Bartholdi D, Caraballo R, Platzer K, Suls A, De Jonghe P, Biskup S, Weckhuysen S., Ann Neurol. January 1, 2014; 75 (1): 147-54.      

The Xenopus homologue of Down syndrome critical region protein 6 drives dorsoanterior gene expression and embryonic axis formation by antagonising polycomb group proteins., Li HY, Grifone R, Saquet A, Carron C, Shi DL., Development. December 1, 2013; 140 (24): 4903-13.                                

Whole-genome microRNA screening identifies let-7 and mir-18 as regulators of germ layer formation during early embryogenesis., Colas AR, McKeithan WL, Cunningham TJ, Bushway PJ, Garmire LX, Duester G, Subramaniam S, Mercola M., Genes Dev. December 1, 2012; 26 (23): 2567-79.      

Klf4 is required for germ-layer differentiation and body axis patterning during Xenopus embryogenesis., Cao Q, Zhang X, Lu L, Yang L, Gao J, Gao Y, Ma H, Cao Y., Development. November 1, 2012; 139 (21): 3950-61.                  

A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus., Szenker E, Lacoste N, Almouzni G., Cell Rep. June 28, 2012; 1 (6): 730-40.                                      

mNanog possesses dorsal mesoderm-inducing ability by modulating both BMP and Activin/nodal signaling in Xenopus ectodermal cells., Miyazaki A, Ishii K, Yamashita S, Nejigane S, Matsukawa S, Ito Y, Onuma Y, Asashima M, Michiue T., PLoS One. January 1, 2012; 7 (10): e46630.        

Novel functions of Noggin proteins: inhibition of Activin/Nodal and Wnt signaling., Bayramov AV, Eroshkin FM, Martynova NY, Ermakova GV, Solovieva EA, Zaraisky AG., Development. December 1, 2011; 138 (24): 5345-56.              

APOBEC2, a selective inhibitor of TGFβ signaling, regulates left-right axis specification during early embryogenesis., Vonica A, Rosa A, Arduini BL, Brivanlou AH., Dev Biol. February 1, 2011; 350 (1): 13-23.                

Residues at the tip of the pore loop of NR3B-containing NMDA receptors determine Ca2+ permeability and Mg2+ block., Cavara NA, Orth A, Hicking G, Seebohm G, Hollmann M., BMC Neurosci. October 19, 2010; 11 133.          

Structural determinants of D-cycloserine efficacy at the NR1/NR2C NMDA receptors., Dravid SM, Burger PB, Prakash A, Geballe MT, Yadav R, Le P, Vellano K, Snyder JP, Traynelis SF., J Neurosci. February 17, 2010; 30 (7): 2741-54.

Distinct Xenopus Nodal ligands sequentially induce mesendoderm and control gastrulation movements in parallel to the Wnt/PCP pathway., Luxardi G, Marchal L, Thomé V, Kodjabachian L., Development. February 1, 2010; 137 (3): 417-26.          

N-methyl-D-aspartate (NMDA) receptor NR2 subunit selectivity of a series of novel piperazine-2,3-dicarboxylate derivatives: preferential blockade of extrasynaptic NMDA receptors in the rat hippocampal CA3-CA1 synapse., Costa BM, Feng B, Tsintsadze TS, Morley RM, Irvine MW, Tsintsadze V, Lozovaya NA, Jane DE, Monaghan DT., J Pharmacol Exp Ther. November 1, 2009; 331 (2): 618-26.

Control of NMDA receptor function by the NR2 subunit amino-terminal domain., Yuan H, Hansen KB, Vance KM, Ogden KK, Traynelis SF., J Neurosci. September 30, 2009; 29 (39): 12045-58.

Cloning and Phylogenetic Analysis of NMDA Receptor Subunits NR1, NR2A and NR2B in Xenopus laevis Tadpoles., Ewald RC, Cline HT., Front Mol Neurosci. September 11, 2009; 2 4.          

Tumor necrosis factor-receptor-associated factor-4 is a positive regulator of transforming growth factor-beta signaling that affects neural crest formation., Kalkan T, Iwasaki Y, Park CY, Thomsen GH., Mol Biol Cell. July 1, 2009; 20 (14): 3436-50.                          

Effects of NR1 splicing on NR1/NR3B-type excitatory glycine receptors., Cavara NA, Orth A, Hollmann M., BMC Neurosci. April 6, 2009; 10 32.      

Pharmacological characterization of recombinant NR1/NR2A NMDA receptors with truncated and deleted carboxy termini expressed in Xenopus laevis oocytes., Puddifoot CA, Chen PE, Schoepfer R, Wyllie DJ., Br J Pharmacol. February 1, 2009; 156 (3): 509-18.

Molecular determinants of multiple effects of nickel on NMDA receptor channels., Gavazzo P, Guida P, Zanardi I, Marchetti C., Neurotox Res. January 1, 2009; 15 (1): 38-48.

Different structural requirements for functional ion pore transplantation suggest different gating mechanisms of NMDA and kainate receptors., Villmann C, Hoffmann J, Werner M, Kott S, Strutz-Seebohm N, Nilsson T, Hollmann M., J Neurochem. October 1, 2008; 107 (2): 453-65.

Rules of engagement for NMDA receptor subunits., Ulbrich MH, Isacoff EY., Proc Natl Acad Sci U S A. September 16, 2008; 105 (37): 14163-8.

The NR1 M3 domain mediates allosteric coupling in the N-methyl-D-aspartate receptor., Blanke ML, VanDongen AM., Mol Pharmacol. August 1, 2008; 74 (2): 454-65.

Constitutive activation of the N-methyl-D-aspartate receptor via cleft-spanning disulfide bonds., Blanke ML, VanDongen AM., J Biol Chem. August 1, 2008; 283 (31): 21519-29.

Activin/nodal signaling modulates XPAPC expression during Xenopus gastrulation., Lou X, Li S, Wang J, Ding X., Dev Dyn. March 1, 2008; 237 (3): 683-91.        

Apparent homomeric NR1 currents observed in Xenopus oocytes are caused by an endogenous NR2 subunit., Schmidt C, Hollmann M., J Mol Biol. February 22, 2008; 376 (3): 658-70.

Formation of NR1/NR2 and NR1/NR3 heterodimers constitutes the initial step in N-methyl-D-aspartate receptor assembly., Schüler T, Mesic I, Madry C, Bartholomäus I, Laube B., J Biol Chem. January 4, 2008; 283 (1): 37-46.

Mg2+ and memantine block of rat recombinant NMDA receptors containing chimeric NR2A/2D subunits expressed in Xenopus laevis oocytes., Wrighton DC, Baker EJ, Chen PE, Wyllie DJ., J Physiol. January 1, 2008; 586 (1): 211-25.

Modulation of glycine potency in rat recombinant NMDA receptors containing chimeric NR2A/2D subunits expressed in Xenopus laevis oocytes., Chen PE, Geballe MT, Katz E, Erreger K, Livesey MR, O'Toole KK, Le P, Lee CJ, Lee CJ, Snyder JP, Traynelis SF, Wyllie DJ., J Physiol. January 1, 2008; 586 (1): 227-45.

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