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Summary Expression Phenotypes Gene Literature (488) GO Terms (0) Nucleotides (2) Proteins (0) Interactants (683) Wiki
XB-GENEPAGE-22251894

Papers associated with trna



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Molecular phylogeny of OVOL genes illustrates a conserved C2H2 zinc finger domain coupled by hypervariable unstructured regions., Kumar A, Bhandari A, Sinha R, Sardar P, Sushma M, Goyal P, Goswami C, Grapputo A., PLoS One. January 1, 2012; 7 (6): e39399.                

Inhibition of selenocysteine tRNA[Ser]Sec aminoacylation provides evidence that aminoacylation is required for regulatory methylation of this tRNA., Kim JY, Carlson BA, Xu XM, Zeng Y, Chen S, Gladyshev VN, Lee BJ, Hatfield DL., Biochem Biophys Res Commun. June 17, 2011; 409 (4): 814-9.

Gadd45a is an RNA binding protein and is localized in nuclear speckles., Sytnikova YA, Kubarenko AV, Schäfer A, Weber AN, Niehrs C., PLoS One. January 7, 2011; 6 (1): e14500.            

Preparation of translationally competent tRNA by direct chemical acylation., Duffy NH, Dougherty DA., Org Lett. September 3, 2010; 12 (17): 3776-9.

Cajal body surveillance of U snRNA export complex assembly., Suzuki T, Izumi H, Ohno M., J Cell Biol. August 23, 2010; 190 (4): 603-12.            

Visualizing protein interactions involved in the formation of the 42S RNP storage particle of Xenopus oocytes., Schneider H, Dabauvalle MC, Wilken N, Scheer U., Biol Cell. May 26, 2010; 102 (8): 469-78.

Transcriptional regulation of the human establishment of cohesion 1 homolog 2 gene., Nishihara M, Yamada M, Nozaki M, Nakahira K, Yanagihara I., Biochem Biophys Res Commun. February 26, 2010; 393 (1): 111-7.

The 5'-untranslated region of the mouse mammary tumor virus mRNA exhibits cap-independent translation initiation., Vallejos M, Ramdohr P, Valiente-Echeverría F, Tapia K, Rodriguez FE, Lowy F, Huidobro-Toro JP, Dangerfield JA, López-Lastra M., Nucleic Acids Res. January 1, 2010; 38 (2): 618-32.            

Single-molecule imaging of a fluorescent unnatural amino acid incorporated into nicotinic receptors., Pantoja R, Rodriguez EA, Dibas MI, Dougherty DA, Lester HA., Biophys J. January 1, 2009; 96 (1): 226-37.

Gene expression in Pre-MBT embryos and activation of maternally-inherited program of apoptosis to be executed at around MBT as a fail-safe mechanism in Xenopus early embryogenesis., Shiokawa K, Aso M, Kondo T, Uchiyama H, Kuroyanagi S, Takai J, Takahashi S, Kajitani M, Kaito C, Sekimizu K, Takayama E, Igarashi K, Hara H., Gene Regul Syst Bio. May 29, 2008; 2 213-31.                        

Molecular characterization and expression analysis of five different elongation factor 1 alpha genes in the flatfish Senegalese sole (Solea senegalensis Kaup): differential gene expression and thyroid hormones dependence during metamorphosis., Infante C, Asensio E, Cañavate JP, Manchado M., BMC Mol Biol. January 30, 2008; 9 19.              

Genome-wide analysis demonstrates conserved localization of messenger RNAs to mitotic microtubules., Blower MD, Feric E, Weis K, Heald R., J Cell Biol. December 31, 2007; 179 (7): 1365-73.          

Improved amber and opal suppressor tRNAs for incorporation of unnatural amino acids in vivo. Part 1: minimizing misacylation., Rodriguez EA, Lester HA, Dougherty DA., RNA. October 1, 2007; 13 (10): 1703-14.

Improved amber and opal suppressor tRNAs for incorporation of unnatural amino acids in vivo. Part 2: evaluating suppression efficiency., Rodriguez EA, Lester HA, Dougherty DA., RNA. October 1, 2007; 13 (10): 1715-22.

ZNF143 interacts with p73 and is involved in cisplatin resistance through the transcriptional regulation of DNA repair genes., Wakasugi T, Izumi H, Uchiumi T, Suzuki H, Arao T, Nishio K, Kohno K., Oncogene. August 9, 2007; 26 (36): 5194-203.

Sequence preference in RNA recognition by the nucleoporin Nup153., Ball JR, Dimaano C, Bilak A, Kurchan E, Zundel MT, Ullman KS., J Biol Chem. March 23, 2007; 282 (12): 8734-40.

A genome scale location analysis of human Staf/ZNF143-binding sites suggests a widespread role for human Staf/ZNF143 in mammalian promoters., Myslinski E, Gérard MA, Krol A, Carbon P., J Biol Chem. December 29, 2006; 281 (52): 39953-62.

Grainyhead-like 3, a transcription factor identified in a microarray screen, promotes the specification of the superficial layer of the embryonic epidermis., Chalmers AD, Lachani K, Shin Y, Sherwood V, Cho KW, Papalopulu N., Mech Dev. September 1, 2006; 123 (9): 702-18.                                                  

In vivo incorporation of multiple unnatural amino acids through nonsense and frameshift suppression., Rodriguez EA, Lester HA, Dougherty DA., Proc Natl Acad Sci U S A. June 6, 2006; 103 (23): 8650-5.

The c-myc DNA-unwinding element-binding protein modulates the assembly of DNA replication complexes in vitro., Casper JM, Kemp MG, Ghosh M, Randall GM, Vaillant A, Leffak M., J Biol Chem. April 1, 2005; 280 (13): 13071-83.

Evidence for overlapping, but not identical, protein machineries operating in vegetal RNA localization along early and late pathways in Xenopus oocytes., Claussen M, Horvay K, Pieler T., Development. September 1, 2004; 131 (17): 4263-73.            

Nuclear localization of aminoacyl-tRNA synthetases using single-cell capillary electrophoresis laser-induced fluorescence analysis., Gunasekera N, Lee SW, Kim S, Musier-Forsyth K, Arriaga E., Anal Chem. August 15, 2004; 76 (16): 4741-6.

Site-specific insertion of spin-labeled L-amino acids in Xenopus oocytes., Shafer AM, Kálai T, Bin Liu SQ, Hideg K, Voss JC., Biochemistry. July 6, 2004; 43 (26): 8470-82.

Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the bell-ring frog, Buergeria buergeri (family Rhacophoridae)., Sano N, Kurabayashi A, Fujii T, Yonekawa H, Sumida M., Genes Genet Syst. June 1, 2004; 79 (3): 151-63.

Characterization of snRNA and snRNA-type genes in the pufferfish Fugu rubripes., Myslinski E, Krol A, Carbon P., Gene. April 14, 2004; 330 149-58.

The regulation of retina specific expression of rhodopsin gene in vertebrates., Zhang T, Tan YH, Fu J, Lui D, Ning Y, Jirik FR, Brenner S, Venkatesh B., Gene. August 14, 2003; 313 189-200.              

VgRBP71 stimulates cleavage at a polyadenylation signal in Vg1 mRNA, resulting in the removal of a cis-acting element that represses translation., Kolev NG, Huber PW., Mol Cell. March 1, 2003; 11 (3): 745-55.              

RNA cleavage and inhibition of protein synthesis by bleomycin., Abraham AT, Lin JJ, Newton DL, Rybak S, Hecht SM., Chem Biol. January 1, 2003; 10 (1): 45-52.

Exportin-5-mediated nuclear export of eukaryotic elongation factor 1A and tRNA., Calado A, Treichel N, Müller EC, Otto A, Kutay U., EMBO J. November 15, 2002; 21 (22): 6216-24.

Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold., Ye K, Serganov A, Hu W, Garber M, Patel DJ., Eur J Biochem. November 1, 2002; 269 (21): 5182-91.

Differential processing of the Xenopus ATP(CTP):tRNA nucleotidyltransferase mRNA., Keady BT, Attfield KR, Hake LE., Biochem Biophys Res Commun. September 27, 2002; 297 (3): 573-80.        

Steady-state nuclear localization of exportin-t involves RanGTP binding and two distinct nuclear pore complex interaction domains., Kuersten S, Arts GJ, Walther TC, Englmeier L, Mattaj IW., Mol Cell Biol. August 1, 2002; 22 (16): 5708-20.

A novel Xenopus Smad-interacting forkhead transcription factor (XFast-3) cooperates with XFast-1 in regulating gastrulation movements., Howell M, Inman GJ, Hill CS., Development. June 1, 2002; 129 (12): 2823-34.    

Distinct enhancers regulate skeletal and cardiac muscle-specific expression programs of the cardiac alpha-actin gene in Xenopus embryos., Latinkić BV, Cooper B, Towers N, Sparrow D, Kotecha S, Mohun TJ., Dev Biol. May 1, 2002; 245 (1): 57-70.          

Alteration of nuclear lamin organization inhibits RNA polymerase II-dependent transcription., Spann TP, Goldman AE, Wang C, Huang S, Goldman RD., J Cell Biol. February 18, 2002; 156 (4): 603-8.            

Expression of the gene encoding the beta-amyloid precursor protein APP in Xenopus laevis., van den Hurk WH, Bloemen M, Martens GJ., Brain Res Mol Brain Res. December 16, 2001; 97 (1): 13-20.          

Herpes simplex virus ICP27 protein provides viral mRNAs with access to the cellular mRNA export pathway., Koffa MD, Clements JB, Izaurralde E, Wadd S, Wilson SA, Mattaj IW, Kuersten S., EMBO J. October 15, 2001; 20 (20): 5769-78.

Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata., Sumida M, Kanamori Y, Kaneda H, Kato Y, Nishioka M, Hasegawa M, Yonekawa H., Genes Genet Syst. October 1, 2001; 76 (5): 311-25.

The orphan receptor ALK7 and the Activin receptor ALK4 mediate signaling by Nodal proteins during vertebrate development., Reissmann E, Jörnvall H, Blokzijl A, Andersson O, Chang C, Minchiotti G, Persico MG, Ibáñez CF, Brivanlou AH., Genes Dev. August 1, 2001; 15 (15): 2010-22.                

Origin of an animal mitochondrial DNA polymerase subunit via lineage-specific acquisition of a glycyl-tRNA synthetase from bacteria of the Thermus-Deinococcus group., Wolf YI, Koonin EV., Trends Genet. August 1, 2001; 17 (8): 431-3.

Internal modification of U2 small nuclear (sn)RNA occurs in nucleoli of Xenopus oocytes., Yu YT, Shu MD, Narayanan A, Terns RM, Terns MP, Steitz JA., J Cell Biol. March 19, 2001; 152 (6): 1279-88.              

Cleavage of non-tRNA substrates by eukaryal tRNA splicing endonucleases., Fruscoloni P, Baldi MI, Tocchini-Valentini GP., EMBO Rep. March 1, 2001; 2 (3): 217-21.

Recognition of engineered tRNAs with an extended 3' end by Exportin-t (Xpo-t) and transport of tRNA-attached ribozymes to the cytoplasm in somatic cells., Kuwabara T, Warashina M, Sano M, Tang H, Wong-Staal F, Munekata E, Taira K., Biomacromolecules. January 1, 2001; 2 (4): 1229-42.

Codon usage and tRNA genes in eukaryotes: correlation of codon usage diversity with translation efficiency and with CG-dinucleotide usage as assessed by multivariate analysis., Kanaya S, Yamada Y, Kinouchi M, Kudo Y, Ikemura T., J Mol Evol. January 1, 2001; 53 (4-5): 290-8.

A Ran-independent pathway for export of spliced mRNA., Clouse KN, Luo MJ, Zhou Z, Reed R., Nat Cell Biol. January 1, 2001; 3 (1): 97-9.

Association of human immunodeficiency virus type 1 Vif with RNA and its role in reverse transcription., Dettenhofer M, Cen S, Carlson BA, Kleiman L, Yu XF., J Virol. October 1, 2000; 74 (19): 8938-45.

Inhibition of selenoprotein synthesis by selenocysteine tRNA[Ser]Sec lacking isopentenyladenosine., Warner GJ, Berry MJ, Moustafa ME, Carlson BA, Hatfield DL, Faust JR., J Biol Chem. September 8, 2000; 275 (36): 28110-9.

Methylation of the ribosyl moiety at position 34 of selenocysteine tRNA[Ser]Sec is governed by both primary and tertiary structure., Kim LK, Matsufuji T, Matsufuji S, Carlson BA, Kim SS, Hatfield DL, Lee BJ., RNA. September 1, 2000; 6 (9): 1306-15.

RanGTP-binding protein NXT1 facilitates nuclear export of different classes of RNA in vitro., Ossareh-Nazari B, Maison C, Black BE, Lévesque L, Paschal BM, Dargemont C., Mol Cell Biol. July 1, 2000; 20 (13): 4562-71.

Eukaryotic selenocysteine incorporation follows a nonprocessive mechanism that competes with translational termination., Nasim MT, Jaenecke S, Belduz A, Kollmus H, Flohé L, McCarthy JE., J Biol Chem. May 19, 2000; 275 (20): 14846-52.

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