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A time-resolved single-cell roadmap of the logic driving anterior neural crest diversification from neural border to migration stages. , Kotov A, Seal S, Alkobtawi M, Kappès V, Ruiz SM, Arbès H, Harland RM , Peshkin L , Monsoro-Burq AH ., Proc Natl Acad Sci U S A. May 7, 2024; 121 (19): e2311685121.
HNF1B Alters an Evolutionarily Conserved Nephrogenic Program of Target Genes. , Grand K, Stoltz M, Rizzo L, Röck R, Kaminski MM, Salinas G, Getwan M , Naert T, Pichler R, Lienkamp SS ., J Am Soc Nephrol. March 1, 2023; 34 (3): 412-432.
Retinoic acid control of pax8 during renal specification of Xenopus pronephros involves hox and meis3. , Durant-Vesga J, Suzuki N, Ochi H , Le Bouffant R , Eschstruth A, Ogino H , Umbhauer M , Riou JF ., Dev Biol. January 1, 2023; 493 17-28.
Hnf1b renal expression directed by a distal enhancer responsive to Pax8. , Goea L, Buisson I , Bello V, Eschstruth A, Paces-Fessy M, Le Bouffant R , Chesneau A, Cereghini S, Riou JF , Umbhauer M ., Sci Rep. November 19, 2022; 12 (1): 19921.
Retinoic acid production, regulation and containment through Zic1, Pitx2c and Cyp26c1 control cranial placode specification. , Dubey A, Yu J, Liu T, Kane MA, Saint-Jeannet JP ., Development. February 16, 2021; 148 (4):
Modeling endoderm development and disease in Xenopus. , Edwards NA , Zorn AM ., Curr Top Dev Biol. January 1, 2021; 145 61-90.
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network. , Mukherjee S , Chaturvedi P , Rankin SA , Rankin SA , Fish MB, Wlizla M , Paraiso KD , MacDonald M, Chen X, Weirauch MT, Blitz IL , Cho KW , Zorn AM ., Elife. September 7, 2020; 9
Modeling congenital kidney diseases in Xenopus laevis. , Blackburn ATM, Miller RK ., Dis Model Mech. April 9, 2019; 12 (4):
Arid3a regulates nephric tubule regeneration via evolutionarily conserved regeneration signal-response enhancers. , Suzuki N, Hirano K, Ogino H , Ochi H ., Elife. January 8, 2019; 8
Dynamin Binding Protein Is Required for Xenopus laevis Kidney Development. , DeLay BD , Baldwin TA, Miller RK ., Front Physiol. January 1, 2019; 10 143.
RARγ is required for mesodermal gene expression prior to gastrulation in Xenopus. , Janesick A , Tang W, Shioda T, Blumberg B ., Development. September 17, 2018; 145 (18):
Retinoic acid-induced expression of Hnf1b and Fzd4 is required for pancreas development in Xenopus laevis. , Gere-Becker MB, Pommerenke C, Lingner T, Pieler T ., Development. June 8, 2018; 145 (12):
Tissue-Specific Gene Inactivation in Xenopus laevis: Knockout of lhx1 in the Kidney with CRISPR/Cas9. , DeLay BD , Corkins ME, Hanania HL, Salanga M , Deng JM, Sudou N , Taira M , Horb ME , Miller RK ., Genetics. February 1, 2018; 208 (2): 673-686.
Znf703, a novel target of Pax3 and Zic1, regulates hindbrain and neural crest development in Xenopus. , Hong CS , Saint-Jeannet JP ., Genesis. December 1, 2017; 55 (12):
Genome-wide identification of thyroid hormone receptor targets in the remodeling intestine during Xenopus tropicalis metamorphosis. , Fu L, Das B, Matsuura K, Fujimoto K , Heimeier RA, Shi YB , Shi YB ., Sci Rep. July 25, 2017; 7 (1): 6414.
A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo. , Blitz IL , Paraiso KD , Patrushev I , Chiu WTY , Cho KWY , Gilchrist MJ ., Dev Biol. June 15, 2017; 426 (2): 409-417.
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Direct reprogramming of fibroblasts into renal tubular epithelial cells by defined transcription factors. , Kaminski MM, Tosic J, Kresbach C, Engel H, Klockenbusch J, Müller AL, Pichler R, Grahammer F, Kretz O, Huber TB, Walz G , Arnold SJ, Lienkamp SS ., Nat Cell Biol. December 1, 2016; 18 (12): 1269-1280.
Xenopus as a model system for studying pancreatic development and diabetes. , Kofent J, Spagnoli FM ., Semin Cell Dev Biol. March 1, 2016; 51 106-16.
Using Xenopus to study genetic kidney diseases. , Lienkamp SS ., Semin Cell Dev Biol. March 1, 2016; 51 117-24.
pdzrn3 is required for pronephros morphogenesis in Xenopus laevis. , Marracci S , Vangelisti A, Raffa V, Andreazzoli M , Dente L ., Int J Dev Biol. January 1, 2016; 60 (1-3): 57-63.
Zic1 controls placode progenitor formation non-cell autonomously by regulating retinoic acid production and transport. , Jaurena MB, Juraver-Geslin H , Devotta A, Saint-Jeannet JP ., Nat Commun. June 23, 2015; 6 7476.
Pax8 and Pax2 are specifically required at different steps of Xenopus pronephros development. , Buisson I , Le Bouffant R , Futel M, Riou JF , Umbhauer M ., Dev Biol. January 15, 2015; 397 (2): 175-90.
A novel function for Egr4 in posterior hindbrain development. , Bae CJ, Jeong J, Saint-Jeannet JP ., Sci Rep. January 12, 2015; 5 7750.
Recessive mutations in PCBD1 cause a new type of early-onset diabetes. , Simaite D, Kofent J, Gong M, Rüschendorf F, Jia S, Arn P, Bentler K, Ellaway C, Kühnen P, Hoffmann GF, Blau N, Spagnoli FM , Hübner N, Raile K., Diabetes. October 1, 2014; 63 (10): 3557-64.
Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. , Zheng Z, Christley S, Chiu WT , Blitz IL , Xie X, Cho KW , Nie Q., BMC Syst Biol. January 8, 2014; 8 3.
HNF1B controls proximal-intermediate nephron segment identity in vertebrates by regulating Notch signalling components and Irx1/2. , Heliot C, Desgrange A, Buisson I , Prunskaite-Hyyryläinen R, Shan J, Vainio S, Umbhauer M , Cereghini S., Development. February 1, 2013; 140 (4): 873-85.
Exon capture and bulk segregant analysis: rapid discovery of causative mutations using high-throughput sequencing. , del Viso F, Bhattacharya D, Kong Y, Gilchrist MJ , Khokha MK ., BMC Genomics. November 21, 2012; 13 649.
Thyroid hormone-dependent development in Xenopus laevis: a sensitive screen of thyroid hormone signaling disruption by municipal wastewater treatment plant effluent. , Searcy BT, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Stafford P, Schwendiman AL, Soto-Pena J, Owen MC, Ramirez C, Phillips J, Veldhoen N, Helbing CC , Propper CR., Gen Comp Endocrinol. May 1, 2012; 176 (3): 481-92.
Heat-shock mediated overexpression of HNF1β mutations has differential effects on gene expression in the Xenopus pronephric kidney. , Sauert K, Kahnert S, Roose M, Gull M, Brändli AW , Ryffel GU , Waldner C ., PLoS One. January 1, 2012; 7 (3): e33522.
Xenopus as a model system for the study of GOLPH2/ GP73 function: Xenopus GOLPH2 is required for pronephros development. , Li L, Wen L, Gong Y, Mei G, Liu J , Chen Y , Peng T., PLoS One. January 1, 2012; 7 (6): e38939.
The nephrogenic potential of the transcription factors osr1, osr2, hnf1b, lhx1 and pax8 assessed in Xenopus animal caps. , Drews C, Senkel S , Ryffel GU ., BMC Dev Biol. January 31, 2011; 11 5.
Inversin relays Frizzled-8 signals to promote proximal pronephros development. , Lienkamp S , Ganner A, Boehlke C, Schmidt T, Arnold SJ, Schäfer T, Romaker D, Schuler J, Hoff S, Powelske C, Eifler A, Krönig C, Bullerkotte A, Nitschke R, Kuehn EW, Kim E , Burkhardt H, Brox T, Ronneberger O, Gloy J, Walz G ., Proc Natl Acad Sci U S A. November 23, 2010; 107 (47): 20388-93.
Remobilization of Tol2 transposons in Xenopus tropicalis. , Yergeau DA, Kelley CM , Kuliyev E, Zhu H, Sater AK , Wells DE, Mead PE ., BMC Dev Biol. January 22, 2010; 10 11.
The miR-30 miRNA family regulates Xenopus pronephros development and targets the transcription factor Xlim1/ Lhx1. , Agrawal R , Tran U , Wessely O ., Development. December 1, 2009; 136 (23): 3927-36.
The Xenopus Irx genes are essential for neural patterning and define the border between prethalamus and thalamus through mutual antagonism with the anterior repressors Fezf and Arx. , Rodríguez-Seguel E, Alarcón P, Gómez-Skarmeta JL ., Dev Biol. May 15, 2009; 329 (2): 258-68.
Requirement of Wnt/beta-catenin signaling in pronephric kidney development. , Lyons JP, Miller RK , Zhou X , Weidinger G , Deroo T, Denayer T, Park JI , Ji H, Hong JY, Li A, Moon RT , Jones EA , Vleminckx K , Vleminckx K , Vize PD , McCrea PD ., Mech Dev. January 1, 2009; 126 (3-4): 142-59.
Sfrp5 coordinates foregut specification and morphogenesis by antagonizing both canonical and noncanonical Wnt11 signaling. , Li Y, Rankin SA , Rankin SA , Sinner D , Kenny AP , Krieg PA , Zorn AM ., Genes Dev. November 1, 2008; 22 (21): 3050-63.
Transcription factor HNF1beta and novel partners affect nephrogenesis. , Dudziak K, Mottalebi N, Senkel S , Edghill EL, Rosengarten S, Roose M, Bingham C, Ellard S, Ryffel GU ., Kidney Int. July 1, 2008; 74 (2): 210-7.
Xenopus Bicaudal-C is required for the differentiation of the amphibian pronephros. , Tran U , Pickney LM, Ozpolat BD , Wessely O ., Dev Biol. July 1, 2007; 307 (1): 152-64.
FGF is essential for both condensation and mesenchymal-epithelial transition stages of pronephric kidney tubule development. , Urban AE , Zhou X , Zhou X , Ungos JM, Raible DW, Altmann CR , Vize PD ., Dev Biol. September 1, 2006; 297 (1): 103-17.
A heterozygous activating mutation in the sulphonylurea receptor SUR1 ( ABCC8) causes neonatal diabetes. , Proks P, Arnold AL, Bruining J, Girard C, Flanagan SE, Larkin B, Colclough K, Hattersley AT, Ashcroft FM, Ellard S., Hum Mol Genet. June 1, 2006; 15 (11): 1793-800.
GATA4, 5 and 6 mediate TGFbeta maintenance of endodermal gene expression in Xenopus embryos. , Afouda BA , Ciau-Uitz A , Patient R ., Development. February 1, 2005; 132 (4): 763-74.
Global analysis of RAR-responsive genes in the Xenopus neurula using cDNA microarrays. , Arima K, Shiotsugu J, Niu R, Khandpur R, Martinez M, Shin Y , Koide T, Cho KW , Kitayama A, Ueno N , Chandraratna RA, Blumberg B ., Dev Dyn. February 1, 2005; 232 (2): 414-31.
The HNF1beta transcription factor has several domains involved in nephrogenesis and partially rescues Pax8/lim1-induced kidney malformations. , Wu G, Bohn S, Ryffel GU ., Eur J Biochem. September 1, 2004; 271 (18): 3715-28.
A genetic screen in zebrafish identifies cilia genes as a principal cause of cystic kidney. , Sun Z, Amsterdam A, Pazour GJ, Cole DG, Miller MS, Hopkins N., Development. August 1, 2004; 131 (16): 4085-93.
Sox17 and beta-catenin cooperate to regulate the transcription of endodermal genes. , Sinner D , Rankin S , Rankin S , Lee M, Zorn AM ., Development. July 1, 2004; 131 (13): 3069-80.
Distinct molecular and morphogenetic properties of mutations in the human HNF1beta gene that lead to defective kidney development. , Bohn S, Thomas H, Turan G, Ellard S, Bingham C, Hattersley AT, Ryffel GU ., J Am Soc Nephrol. August 1, 2003; 14 (8): 2033-41.
An alternative, human SRC promoter and its regulation by hepatic nuclear factor-1alpha. , Bonham K, Ritchie SA, Dehm SM, Snyder K , Boyd FM., J Biol Chem. December 1, 2000; 275 (48): 37604-11.
The mutated human gene encoding hepatocyte nuclear factor 1beta inhibits kidney formation in developing Xenopus embryos. , Wild W, Pogge von Strandmann E, Nastos A, Senkel S , Lingott-Frieg A, Bulman M, Bingham C, Ellard S, Hattersley AT, Ryffel GU ., Proc Natl Acad Sci U S A. April 25, 2000; 97 (9): 4695-700.