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Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs. , Bredeson JV, Mudd AB, Medina-Ruiz S, Mitros T, Smith OK, Miller KE, Lyons JB, Batra SS, Park J , Berkoff KC, Plott C, Grimwood J, Schmutz J, Aguirre-Figueroa G, Khokha MK , Lane M, Philipp I, Laslo M, Hanken J , Kerdivel G, Buisine N , Sachs LM , Buchholz DR , Kwon T , Smith-Parker H, Gridi-Papp M, Ryan MJ, Denton RD, Malone JH, Wallingford JB , Straight AF , Heald R , Hockemeyer D, Harland RM , Rokhsar DS ., Nat Commun. January 17, 2024; 15 (1): 579.
A genomic survey of LINE elements in Pipidae aquatic frogs shed light on Rex-elements evolution in these genomes. , Moura Gama J, Ludwig A, Gazolla CB, Guizelini D, Recco-Pimentel SM, Bruschi DP ., Mol Phylogenet Evol. March 1, 2022; 168 107393.
Repression of Inappropriate Gene Expression in the Vertebrate Embryonic Ectoderm. , Reich S, Weinstein DC ., Genes (Basel). November 6, 2019; 10 (11):
A single KH domain in Bicaudal-C links mRNA binding and translational repression functions to maternal development. , Dowdle ME, Park S, Blaser Imboden S, Fox CA, Houston DW , Sheets MD ., Development. May 15, 2019; 146 (10):
Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus. , Gentsch GE , Spruce T, Monteiro RS , Owens NDL, Martin SR, Smith JC ., Dev Cell. March 12, 2018; 44 (5): 597-610.e10.
Functional differences between Tcf1 isoforms in early Xenopus development. , Roël G, Van Den Broek O, Destrée O ., Int J Dev Biol. January 1, 2017; 61 (1-2): 29-34.
A gradient of maternal Bicaudal-C controls vertebrate embryogenesis via translational repression of mRNAs encoding cell fate regulators. , Park S, Blaser S, Marchal MA, Houston DW , Sheets MD ., Development. March 1, 2016; 143 (5): 864-71.
Pou5f3.2-induced proliferative state of embryonic cells during gastrulation of Xenopus laevis embryo. , Nishitani E, Li C, Lee J , Hotta H, Katayama Y, Yamaguchi M, Kinoshita T., Dev Growth Differ. December 1, 2015; 57 (9): 591-600.
Effects of Nt-truncation and coexpression of isolated Nt domains on the membrane trafficking of electroneutral Na+/HCO3- cotransporters. , Wang DK, Liu Y , Myers EJ, Guo YM, Xie ZD, Jiang DZ, Li JM, Yang J , Liu M, Parker MD , Chen LM., Sci Rep. January 12, 2015; 5 12241.
Initiation and maintenance of pluripotency gene expression in the absence of cohesin. , Lavagnolli T, Gupta P, Hörmanseder E , Mira-Bontenbal H, Dharmalingam G, Carroll T , Gurdon JB , Fisher AG, Merkenschlager M., Genes Dev. January 1, 2015; 29 (1): 23-38.
Hhex and Cer1 mediate the Sox17 pathway for cardiac mesoderm formation in embryonic stem cells. , Liu Y , Kaneda R, Leja TW, Subkhankulova T, Tolmachov O, Minchiotti G, Schwartz RJ, Barahona M, Schneider MD., Stem Cells. June 1, 2014; 32 (6): 1515-26.
A conserved Oct4/POUV-dependent network links adhesion and migration to progenitor maintenance. , Livigni A, Peradziryi H, Sharov AA, Chia G, Hammachi F, Migueles RP, Sukparangsi W, Pernagallo S, Bradley M, Nichols J, Ko MSH, Brickman JM ., Curr Biol. November 18, 2013; 23 (22): 2233-2244.
Bicaudal-C spatially controls translation of vertebrate maternal mRNAs. , Zhang Y , Zhang Y , Cooke A, Park S, Dewey CN, Wickens M, Sheets MD ., RNA. November 1, 2013; 19 (11): 1575-82.
Cortical rotation and messenger RNA localization in Xenopus axis formation. , Houston DW ., Wiley Interdiscip Rev Dev Biol. January 1, 2012; 1 (3): 371-88.
Deficient induction response in a Xenopus nucleocytoplasmic hybrid. , Narbonne P, Simpson DE, Gurdon JB ., PLoS Biol. November 1, 2011; 9 (11): e1001197.
Dual roles of Oct4 in the maintenance of mouse P19 embryonal carcinoma cells: as negative regulator of Wnt/ β-catenin signaling and competence provider for Brachyury induction. , Marikawa Y, Tamashiro DA, Fujita TC, Alarcon VB., Stem Cells Dev. April 1, 2011; 20 (4): 621-33.
Cep152 interacts with Plk4 and is required for centriole duplication. , Hatch EM, Kulukian A, Holland AJ, Cleveland DW, Stearns T ., J Cell Biol. November 15, 2010; 191 (4): 721-9.
Molecular cloning and characterization of the germ cell-related nuclear orphan receptor in chickens. , Lee SI, Kim JK , Park HJ, Jang HJ, Lee HC , Min T, Song G, Han JY ., Mol Reprod Dev. March 1, 2010; 77 (3): 273-84.
Evolution of serum albumin intron-1 is shaped by a 5' truncated non-long terminal repeat retrotransposon in western Palearctic water frogs (Neobatrachia). , Plötner J, Köhler F, Uzzell T, Beerli P, Schreiber R, Guex GD, Hotz H., Mol Phylogenet Evol. December 1, 2009; 53 (3): 784-91.
Functional characterization of two CITED3 homologs (gcCITED3a and gcCITED3b) in the hypoxia-tolerant grass carp, Ctenopharyngodon idellus. , Ng PK, Chiu SK, Kwong TF, Yu RM, Wong MM, Kong RY., BMC Mol Biol. November 3, 2009; 10 101.
Spatially restricted translation of the xCR1 mRNA in Xenopus embryos. , Zhang Y , Forinash KD, McGivern J, Fritz B, Dorey K , Sheets MD ., Mol Cell Biol. July 1, 2009; 29 (13): 3791-802.
Riding shotgun: a dual role for the epidermal growth factor- Cripto/ FRL-1/Cryptic protein Cripto in Nodal trafficking. , Constam DB., Traffic. July 1, 2009; 10 (7): 783-91.
Cripto is a noncompetitive activin antagonist that forms analogous signaling complexes with activin and nodal. , Kelber JA, Shani G, Booker EC, Vale WW, Gray PC., J Biol Chem. February 22, 2008; 283 (8): 4490-500.
Long-range action of Nodal requires interaction with GDF1. , Tanaka C, Sakuma R, Nakamura T, Hamada H, Saijoh Y., Genes Dev. December 15, 2007; 21 (24): 3272-82.
Distinct and cooperative roles of mammalian Vg1 homologs GDF1 and GDF3 during early embryonic development. , Andersson O, Bertolino P, Ibáñez CF., Dev Biol. November 15, 2007; 311 (2): 500-11.
Multiple functions of Cerberus cooperate to induce heart downstream of Nodal. , Foley AC , Korol O, Timmer AM, Mercola M ., Dev Biol. March 1, 2007; 303 (1): 57-65.
Embryonic heart induction. , Foley AC , Gupta RW , Guzzo RM, Korol O, Mercola M ., Ann N Y Acad Sci. October 1, 2006; 1080 85-96.
A novel Cripto-related protein reveals an essential role for EGF-CFCs in Nodal signalling in Xenopus embryos. , Dorey K , Hill CS ., Dev Biol. April 15, 2006; 292 (2): 303-16.
The Vg1-related protein Gdf3 acts in a Nodal signaling pathway in the pre-gastrulation mouse embryo. , Chen C , Ware SM , Sato A, Houston-Hawkins DE, Habas R , Matzuk MM, Shen MM, Brown CW., Development. January 1, 2006; 133 (2): 319-29.
XCR2, one of three Xenopus EGF- CFC genes, has a distinct role in the regulation of left- right patterning. , Onuma Y , Yeo CY, Whitman M ., Development. January 1, 2006; 133 (2): 237-50.
Maternal wnt11 activates the canonical wnt signaling pathway required for axis formation in Xenopus embryos. , Tao Q , Tao Q , Yokota C, Puck H, Kofron M , Birsoy B, Yan D, Asashima M , Wylie CC , Lin X, Heasman J ., Cell. March 25, 2005; 120 (6): 857-71.
Systematic screening for genes specifically expressed in the anterior neuroectoderm during early Xenopus development. , Takahashi N, Tochimoto N, Ohmori SY, Mamada H, Itoh M, Inamori M, Shinga J, Osada S, Taira M ., Int J Dev Biol. January 1, 2005; 49 (8): 939-51.
Xantivin suppresses the activity of EGF- CFC genes to regulate nodal signaling. , Tanegashima K , Haramoto Y , Yokota C, Takahashi S , Asashima M ., Int J Dev Biol. June 1, 2004; 48 (4): 275-83.
Analysis of Spemann organizer formation in Xenopus embryos by cDNA macroarrays. , Wessely O , Kim JI , Geissert D, Tran U , De Robertis EM ., Dev Biol. May 15, 2004; 269 (2): 552-66.
Two modes by which Lefty proteins inhibit nodal signaling. , Chen C , Shen MM., Curr Biol. April 6, 2004; 14 (7): 618-24.
Lefty blocks a subset of TGFbeta signals by antagonizing EGF- CFC coreceptors. , Cheng SK, Olale F, Brivanlou AH , Schier AF., PLoS Biol. February 1, 2004; 2 (2): E30.
Tomoregulin-1 ( TMEFF1) inhibits nodal signaling through direct binding to the nodal coreceptor Cripto. , Harms PW, Chang C ., Genes Dev. November 1, 2003; 17 (21): 2624-9.
Nodal-dependent Cripto signaling promotes cardiomyogenesis and redirects the neural fate of embryonic stem cells. , Parisi S, D'Andrea D, Lago CT, Adamson ED, Persico MG, Minchiotti G., J Cell Biol. October 27, 2003; 163 (2): 303-14.
The pro-BMP activity of Twisted gastrulation is independent of BMP binding. , Oelgeschläger M , Reversade B , Larraín J , Little S, Mullins MC, De Robertis EM ., Development. September 1, 2003; 130 (17): 4047-56.
A novel role for a nodal-related protein; Xnr3 regulates convergent extension movements via the FGF receptor. , Yokota C, Kofron M , Zuck M, Houston DW , Isaacs H , Asashima M , Wylie CC , Heasman J ., Development. May 1, 2003; 130 (10): 2199-212.
FRL-1, a member of the EGF- CFC family, is essential for neural differentiation in Xenopus early development. , Yabe S, Tanegashima K , Haramoto Y , Takahashi S , Fujii T, Kozuma S, Taketani Y, Asashima M ., Development. May 1, 2003; 130 (10): 2071-81.
Molecular regulation of vertebrate early endoderm development. , Shivdasani RA ., Dev Biol. September 15, 2002; 249 (2): 191-203.
Inhibition of Nodal signalling by Lefty mediated through interaction with common receptors and efficient diffusion. , Sakuma R, Ohnishi Yi Y, Meno C, Fujii H, Juan H, Takeuchi J, Ogura T, Li E, Miyazono K, Hamada H., Genes Cells. April 1, 2002; 7 (4): 401-12.
Cripto: a tumor growth factor and more. , Adamson ED, Minchiotti G, Salomon DS., J Cell Physiol. March 1, 2002; 190 (3): 267-78.
Evolutionary dynamics in a novel L2 clade of non-LTR retrotransposons in Deuterostomia. , Lovsin N, Gubensek F, Kordi D., Mol Biol Evol. December 1, 2001; 18 (12): 2213-24.
Proteolytic cleavage of Chordin as a switch for the dual activities of Twisted gastrulation in BMP signaling. , Larraín J , Oelgeschläger M , Ketpura NI, Reversade B , Zakin L, De Robertis EM ., Development. November 1, 2001; 128 (22): 4439-47.
Fucosylation of Cripto is required for its ability to facilitate nodal signaling. , Schiffer SG, Foley S, Kaffashan A, Hronowski X, Zichittella AE, Yeo CY, Miatkowski K, Adkins HB, Damon B, Whitman M , Salomon D, Sanicola M, Williams KP., J Biol Chem. October 12, 2001; 276 (41): 37769-78.
The orphan receptor ALK7 and the Activin receptor ALK4 mediate signaling by Nodal proteins during vertebrate development. , Reissmann E, Jörnvall H, Blokzijl A, Andersson O, Chang C , Minchiotti G, Persico MG, Ibáñez CF, Brivanlou AH ., Genes Dev. August 1, 2001; 15 (15): 2010-22.
Nodal signals to Smads through Cripto-dependent and Cripto-independent mechanisms. , Yeo C, Whitman M ., Mol Cell. May 1, 2001; 7 (5): 949-57.
Nodal signaling uses activin and transforming growth factor-beta receptor-regulated Smads. , Kumar A, Novoselov V, Celeste AJ, Wolfman NM, ten Dijke P, Kuehn MR., J Biol Chem. January 5, 2001; 276 (1): 656-61.