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Summary Expression Phenotypes Gene Literature (159) GO Terms (4) Nucleotides (157) Proteins (46) Interactants (885) Wiki
XB-GENEPAGE-920514

Papers associated with ventx2.2



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Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae., Goutam RS, Kumar V, Lee U, Kim J., Mol Cells. March 22, 2024; 100058.                        

ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation., Wang C, Liu Z, Zeng Y, Zhou L, Long Q, Hassan IU, Zhang Y, Qi X, Cai D, Mao B, Lu G, Sun J, Yao Y, Deng Y, Zhao Q, Feng B, Zhou Q, Chan WY, Zhao H., EMBO Rep. February 1, 2024; 25 (2): 646-671.                                          

Mitochondrial leak metabolism induces the Spemann-Mangold Organizer via Hif-1α in Xenopus., MacColl Garfinkel A, Mnatsakanyan N, Patel JH, Wills AE, Shteyman A, Smith PJS, Alavian KN, Jonas EA, Khokha MK., Dev Cell. November 20, 2023; 58 (22): 2597-2613.e4.                        

Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK., Nat Commun. November 5, 2022; 13 (1): 6681.                                            

Bmp4 Synexpression Gene, Sizzled, Transcription Is Collectively Modulated by Smad1 and Ventx1.1/Ventx2.1 in Early Xenopus Embryos., Rehman ZU, Tayyaba F, Lee U, Kim J., Int J Mol Sci. November 1, 2022; 23 (21):                   

Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K, Freedman S, Braun R, LaBonne C., BMC Genomics. October 23, 2022; 23 (1): 723.                                  

The homeodomain transcription factor Ventx2 regulates respiratory progenitor cell number and differentiation timing during Xenopus lung development., Rankin SA, Rankin SA, Zorn AM., Dev Growth Differ. September 1, 2022; 64 (7): 347-361.            

Ventx Family and Its Functional Similarities with Nanog: Involvement in Embryonic Development and Cancer Progression., Kumar S, Kumar S, Kumar V, Li W, Kim J., Int J Mol Sci. March 1, 2022; 23 (5):         

Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos., Umair Z, Kumar V, Goutam RS, Kumar S, Kumar S, Lee U, Kim J., Mol Cells. October 31, 2021; 44 (10): 723-735.          

Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula., Kumar V, Goutam RS, Umair Z, Park S, Lee U, Kim J., Cells. October 17, 2021; 10 (10):             

The atypical RNA-binding protein Taf15 regulates dorsoanterior neural development through diverse mechanisms in Xenopus tropicalis., DeJong CS, Dichmann DS, Exner CRT, Xu Y, Xu Y, Harland RM., Development. August 1, 2021; 148 (15):


Smad2 and Smad3 differentially modulate chordin transcription via direct binding on the distal elements in gastrula Xenopus embryos., Kumar V, Umair Z, Kumar S, Kumar S, Lee U, Kim J., Biochem Biophys Res Commun. June 25, 2021; 559 168-175.          

A temporally resolved transcriptome for developing "Keller" explants of the Xenopus laevis dorsal marginal zone., Kakebeen AD, Huebner RJ, Shindo A, Kwon K, Kwon T, Wills AE, Wallingford JB., Dev Dyn. May 1, 2021; 250 (5): 717-731.              

Cytoskeletal Protein Zyxin Inhibits the Activity of Genes Responsible for Embryonic Stem Cell Status., Parshina EA, Eroshkin FM, Оrlov EE, Gyoeva FK, Shokhina AG, Staroverov DB, Belousov VV, Zhigalova NA, Prokhortchouk EB, Zaraisky AG, Martynova NY., Cell Rep. November 17, 2020; 33 (7): 108396.                  

TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis., Chen M, Amado N, Tan J, Reis A, Ge M, Abreu JG, He X., Elife. September 14, 2020; 9                                                                                           

Xvent-2 expression in regenerating Xenopus tails., Pshennikova ES, Voronina AS., Stem Cell Investig. July 20, 2020; 7 13.  

Natural size variation among embryos leads to the corresponding scaling in gene expression., Leibovich A, Edri T, Klein SL, Moody SA, Fainsod A., Dev Biol. June 15, 2020; 462 (2): 165-179.                    

Modeling Bainbridge-Ropers Syndrome in Xenopus laevis Embryos., Lichtig H, Artamonov A, Polevoy H, Reid CD, Bielas SL, Frank D., Front Physiol. January 1, 2020; 11 75.                    

BAP1 regulates epigenetic switch from pluripotency to differentiation in developmental lineages giving rise to BAP1-mutant cancers., Kuznetsov JN, Aguero TH, Owens DA, Kurtenbach S, Field MG, Durante MA, Rodriguez DA, King ML, Harbour JW., Sci Adv. September 18, 2019; 5 (9): eaax1738.        

Ventx1.1 competes with a transcriptional activator Xcad2 to regulate negatively its own expression., Kumar S, Kumar S, Umair Z, Kumar V, Lee U, Choi SC, Kim J., BMB Rep. June 1, 2019; 52 (6): 403-408.                

Barhl2 maintains T cell factors as repressors and thereby switches off the Wnt/β-Catenin response driving Spemann organizer formation., Sena E, Rocques N, Borday C, Muhamad Amin HS, Parain K, Sitbon D, Chesneau A, Durand BC., Development. May 22, 2019; 146 (10):                                             

Leukemia inhibitory factor signaling in Xenopus embryo: Insights from gain of function analysis and dominant negative mutant of the receptor., Jalvy S, Veschambre P, Fédou S, Rezvani HR, Thézé N, Thiébaud P., Dev Biol. March 15, 2019; 447 (2): 200-213.                                  

A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells., Buitrago-Delgado E, Schock EN, Nordin K, LaBonne C., Dev Biol. December 15, 2018; 444 (2): 50-61.                

Fam46a regulates BMP-dependent pre-placodal ectoderm differentiation in Xenopus., Watanabe T, Yamamoto T, Tsukano K, Hirano S, Horikawa A, Michiue T., Development. October 26, 2018; 145 (20):                                     

Histone deacetylase activity has an essential role in establishing and maintaining the vertebrate neural crest., Rao A, LaBonne C., Development. August 8, 2018; 145 (15):                           

Xbra and Smad-1 cooperate to activate the transcription of neural repressor ventx1.1 in Xenopus embryos., Kumar S, Kumar S, Umair Z, Yoon J, Lee U, Kim SC, Park JB, Lee JY, Kim J., Sci Rep. July 30, 2018; 8 (1): 11391.                

Notch1 is asymmetrically distributed from the beginning of embryogenesis and controls the ventral center., Castro Colabianchi AM, Revinski DR, Encinas PI, Baez MV, Monti RJ, Rodríguez Abinal M, Kodjabachian L, Franchini LF, López SL., Development. July 17, 2018; 145 (14):                           

A gene regulatory network underlying the formation of pre-placodal ectoderm in Xenopus laevis., Maharana SK, Schlosser G., BMC Biol. July 16, 2018; 16 (1): 79.                            

Tbx2 is required for the suppression of mesendoderm during early Xenopus development., Teegala S, Chauhan R, Lei E, Weinstein DC., Dev Dyn. July 1, 2018; 247 (7): 903-913.                

The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution., Briggs JA, Weinreb C, Wagner DE, Megason S, Peshkin L, Kirschner MW, Klein AM., Science. June 1, 2018; 360 (6392):       

PAWS1 controls Wnt signalling through association with casein kinase 1α., Bozatzi P, Dingwell KS, Wu KZ, Cooper F, Cummins TD, Hutchinson LD, Vogt J, Wood NT, Macartney TJ, Varghese J, Gourlay R, Campbell DG, Smith JC, Sapkota GP., EMBO Rep. April 1, 2018; 19 (4):                             

Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis., Rankin SA, Rankin SA, McCracken KW, Luedeke DM, Han L, Wells JM, Shannon JM, Zorn AM., Dev Biol. February 1, 2018; 434 (1): 121-132.          

FGF mediated MAPK and PI3K/Akt Signals make distinct contributions to pluripotency and the establishment of Neural Crest., Geary L, LaBonne C., Elife. January 19, 2018; 7                     

Xenopus Hybrids Provide Insight Into Cell and Organism Size Control., Gibeaux R, Miller K, Acker R, Kwon T, Heald R., Front Physiol. January 1, 2018; 9 1758.        

Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2., Scerbo P, Marchal L, Kodjabachian L., Elife. June 27, 2017; 6                               

Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing., Popov IK, Kwon T, Crossman DK, Crowley MR, Wallingford JB, Chang C., Dev Biol. June 15, 2017; 426 (2): 429-441.                    

A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL, Paraiso KD, Patrushev I, Chiu WTY, Cho KWY, Gilchrist MJ., Dev Biol. June 15, 2017; 426 (2): 409-417.        

Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis., Watanabe M, Yasuoka Y, Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H, Ogino H, Fukui A, Taira M, Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 301-324.                          

A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM, Paraiso KD, Blitz IL, Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.    

Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition., Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW., PLoS Genet. May 12, 2017; 13 (5): e1006757.                                    

Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs., Stevens ML, Chaturvedi P, Rankin SA, Rankin SA, Macdonald M, Jagannathan S, Yukawa M, Barski A, Zorn AM., Development. April 1, 2017; 144 (7): 1283-1295.                            

Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling., Han W, Lee H, Lee H, Han JK., Sci Rep. February 15, 2017; 7 42590.                        

FoxD1 protein interacts with Wnt and BMP signaling to differentially pattern mesoderm and neural tissue., Polevoy H, Malyarova A, Fonar Y, Elias S, Frank D., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 293-302.              

The MLL/Setd1b methyltransferase is required for the Spemann's organizer gene activation in Xenopus., Lin H, Min Z, Tao Q, Tao Q., Mech Dev. November 1, 2016; 142 1-9.              

Tril targets Smad7 for degradation to allow hematopoietic specification in Xenopus embryos., Green YS, Kwon S, Mimoto MS, Xie Y, Christian JL., Development. November 1, 2016; 143 (21): 4016-4026.                            

Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1., Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK., Dev Biol. January 1, 2016; 409 (1): 26-38.                

Kdm2a/b Lysine Demethylases Regulate Canonical Wnt Signaling by Modulating the Stability of Nuclear β-Catenin., Lu L, Gao Y, Zhang Z, Cao Q, Zhang X, Zou J, Cao Y., Dev Cell. June 22, 2015; 33 (6): 660-74.                                  

NEURODEVELOPMENT. Shared regulatory programs suggest retention of blastula-stage potential in neural crest cells., Buitrago-Delgado E, Nordin K, Rao A, Geary L, LaBonne C., Science. June 19, 2015; 348 (6241): 1332-5.

Notum is required for neural and head induction via Wnt deacylation, oxidation, and inactivation., Zhang X, Cheong SM, Amado NG, Reis AH, MacDonald BT, Zebisch M, Jones EY, Abreu JG, He X., Dev Cell. March 23, 2015; 32 (6): 719-30.                                  

The serpin PN1 is a feedback regulator of FGF signaling in germ layer and primary axis formation., Acosta H, Iliev D, Grahn TH, Gouignard N, Maccarana M, Griesbach J, Herzmann S, Sagha M, Climent M, Pera EM., Development. March 15, 2015; 142 (6): 1146-58.                                    

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