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Summary Expression Phenotypes Gene Literature (2) GO Terms (26) Nucleotides (160) Proteins (51) Interactants (156) Wiki
XB-GENEPAGE-942073

Show:     All X. tropicalis X. laevis

Nucleotide sequences for hmgcs1 - All

RefSeq mRNAs(10)
Models - Gene (26)
Models - mRNA (28)
mRNAs (13)
ESTs (58)

RefSeq mRNAs (10)

Accession Version Protein Name Length Protein Species
NM_001126700 NM_001126700.1 hydroxymethylglutaryl-CoA synthase, cytoplasmic 3026 bp NP_001120172 X. tropicalis
XM_012955776 XM_012955776.3 hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X1 2837 bp XP_012811230 X. tropicalis
NM_001093911 NM_001093911.1 3-hydroxy-3-methylglutaryl-CoA synthase 1 S homeolog 2817 bp NP_001087380 X. laevis.S
XM_018237783 XM_018237783.2 3-hydroxy-3-methylglutaryl-CoA synthase 1 S homeolog isoform X1 2781 bp XP_018093272 X. laevis.S
XM_018237790 XM_018237790.1 3-hydroxy-3-methylglutaryl-CoA synthase 1 S homeolog isoform X1 2807 bp XP_018093279 X. laevis.S
XM_018237796 XM_018237796.2 3-hydroxy-3-methylglutaryl-CoA synthase 1 S homeolog isoform X1 2773 bp XP_018093285 X. laevis.S
NM_001086930 NM_001086930.1 hydroxymethylglutaryl-CoA synthase 1 3098 bp NP_001080399 X. laevis.L
XM_018268159 XM_018268159.2 hydroxymethylglutaryl-CoA synthase 1 isoform X2 3098 bp XP_018123648 X. laevis.L
XM_041562456 XM_041562456.1 XP_041418390.1 hydroxymethylglutaryl-CoA synthase 1 isoform X1 3119 bp XP_041418390 X. laevis.L
XM_041562553 XM_041562553.1 XP_041418487.1 hydroxymethylglutaryl-CoA synthase 1 isoform X2 3065 bp XP_041418487 X. laevis.L

Models - Gene (26)

Source Version Model Species
NCBI 10.1 XBXL10_1g5761 X. laevis.S
NCBI 10.1 XBXL10_1g3227 X. laevis.L
NCBI 10.0 XBXT10g017788 X. tropicalis
ENSEMBL 10.0 hmgcs1 X. tropicalis
Xenbase 9.2 gene9402 X. laevis.L
Xenbase 9.2 gene11239 X. laevis.S
JGI 9.1 Xelaev18008321m.g X. laevis.L
JGI 9.1 Xelaev18010988m.g X. laevis.S
Xenbase 9.1 gene6411 X. tropicalis
ENSEMBL 9.1 hmgcs1 X. tropicalis
JGI 8.0 Xetrov14000426m.g X. tropicalis
JGI 7.2 Xelaev16044463m.g X. laevis.S
JGI 7.1 Xetro.A00375 X. tropicalis
JGI 6.0 XeXenL6RMv10047807m.g X. laevis.S
JGI 6.0 XeXenL6RMv10016304m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000016587 X. tropicalis
JGI 4.1 gw1.43.205.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_43000068 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_43000011 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_43000012 X. tropicalis
JGI 4.1 gw1.43.125.1 X. tropicalis
JGI 4.1 gw1.43.124.1 X. tropicalis
JGI 4.1 e_gw1.43.205.1 X. tropicalis
JGI 4.1 e_gw1.43.125.1 X. tropicalis
JGI 4.1 e_gw1.43.124.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_43000069 X. tropicalis

mRNAs based on gene models(28)

Source Version Model Species
NCBI 10.1 XBmRNA5843 X. laevis.L
NCBI 10.1 XBmRNA10767 X. laevis.S
ENSEMBL 10.0 ENSXETT00000036168 X. tropicalis
NCBI 10.0 mRNA087744 X. tropicalis
Xenbase 9.2 rna27357 X. laevis.L
Xenbase 9.2 rna32686 X. laevis.S
Xenbase 9.1 rna20703 X. tropicalis
JGI 9.1 Xelaev18010988m X. laevis.S
JGI 9.1 Xelaev18008321m X. laevis.L
ENSEMBL 9.1 ENSXETT00000078301 X. tropicalis
ENSEMBL 9.1 ENSXETT00000036168 X. tropicalis
ENSEMBL 9.1 ENSXETT00000072629 X. tropicalis
JGI 8.0 Xetrov14000426m X. tropicalis
JGI 7.2 Xelaev16044463m X. laevis.S
JGI 7.1 Xetro.A00375.1 X. tropicalis
JGI 6.0 XeXenL6RMv10047807m X. laevis.S
JGI 6.0 XeXenL6RMv10016304m X. laevis.S
JGI 4.1 gw1.43.205.1 X. tropicalis
JGI 4.1 e_gw1.43.125.1 X. tropicalis
JGI 4.1 e_gw1.43.205.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000036168 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_43000011 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_43000068 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_43000069 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_43000012 X. tropicalis
JGI 4.1 gw1.43.124.1 X. tropicalis
JGI 4.1 gw1.43.125.1 X. tropicalis
JGI 4.1 e_gw1.43.124.1 X. tropicalis

mRNAs from cDNA libraries (13)

Clone Accession Species Library Anatomy Stage
IMAGE:7794474 BC159179 X. tropicalis NIH_XGC_tropTe4 testis frog
NM_001126700 X. tropicalis
XM_012955776 X. tropicalis
IMAGE:5513857 BC079694 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001093911 X. laevis.S
XM_018237783 X. laevis.S
XM_018237790 X. laevis.S
XM_018237796 X. laevis.S
IMAGE:5570442 BC042929 X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001086930 X. laevis.L
XM_018268159 X. laevis.L
XM_041562456 X. laevis.L
XM_041562553 X. laevis.L

ESTs (58)

Clone Accession 5'/3' Species Library Anatomy Stage
TTpA068k20 BX721379 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA043c04 BX742549 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7620723 CX340911 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7626688 CX380480 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:6981766 CF147674 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:6983698 CF151961 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
IMAGE:6981766 CF225317 5' X. tropicalis NICHD_XGC_Emb8 whole organism NF stage 40 to NF stage 45
xtbs05K16 CN074617 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs18J18 CN081042 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs29H14 CN088278 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs33A08 CN090335 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xtbs07G06 CN092884 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7663733 CX847317 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7667639 CX854760 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7673492 CX883385 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7689156 CX912857 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7794474 CX929345 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7717063 CX977887 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7736488 DN023355 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7739183 DN028074 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:8945345 EG653564 5' X. tropicalis NICHD_XGC_tropInt_54 intestine frog
IMAGE:8947159 EL661910 5' X. tropicalis NICHD_XGC_tropInt_54 intestine frog
xthr14E13 CN098088 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr18N07 CN101030 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr03K17 CN113347 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TGas047j07 AL651042 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTbA012j07 CR409313 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA072h20 CR440330 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA050h06 CR585453 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
THdA004l23 CR589511 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
TTpA004o02 BX706668 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA015i12 BX715337 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:8904972 EL796613 5' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
TTpA043a02 BX742538 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
xthr03K17 CN113346 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7626688 DR899883 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7663733 CX847316 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:8904972 EL796614 3' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:7736488 DN023354 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
TTbA012j07 CR409314 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA058m23 CR429706 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
xtbs05K16 CN074616 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xthr18N07 CN101029 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xtbs18J18 CN081041 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7689156 CX912856 3' X. tropicalis NIH_XGC_tropTe4 testis frog
xtbs29H14 CN088277 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TTpA015i12 BX715338 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7739183 DN028073 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
TTpA068k20 BX721380 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
xtbs33A08 CN090334 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
xthr14E13 CN098087 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTpA043c04 BX742550 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
IMAGE:7620723 CX340910 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xtbs07G06 CN092883 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7717063 CX977886 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:5513857 CF286682 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:8526477 EB463203 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
XL181c11 BJ634017 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5