Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (2) GO Terms (41) Nucleotides (244) Proteins (55) Interactants (201) Wiki
XB-GENEPAGE-6076922

Show:     All X. tropicalis X. laevis

Nucleotide sequences for hcfc1 - All

RefSeq mRNAs(7)
Models - Gene (32)
Models - mRNA (40)
mRNAs (9)
ESTs (128)

RefSeq mRNAs (7)

Accession Version Protein Name Length Protein Species
XM_012968986 XM_012968986.3 host cell factor 1 isoform X1 10742 bp XP_012824440 X. tropicalis
XM_012968987 XM_012968987.3 host cell factor 1 isoform X2 7757 bp XP_012824441 X. tropicalis
NM_001094520 NM_001094520.1 uncharacterized protein LOC494675 8559 bp NP_001087989 X. laevis.S
XM_041574279 XM_041574279.1 XP_041430213.1 uncharacterized protein LOC494675 isoform X1 9116 bp XP_041430213 X. laevis.S
XM_041574280 XM_041574280.1 XP_041430214.1 uncharacterized protein LOC494675 isoform X2 6517 bp XP_041430214 X. laevis.S
XM_018241076 XM_018241076.2 XP_018096565.2 host cell factor 1-like isoform X2 10092 bp XP_018096565 X. laevis.L
XM_041573149 XM_041573149.1 XP_041429083.1 host cell factor 1-like isoform X1 10100 bp XP_041429083 X. laevis.L

Models - Gene (32)

Source Version Model Species
NCBI 10.1 XBXL10_1g37762 X. laevis.S
NCBI 10.0 XBXT10g001123 X. tropicalis
NCBI 10.1 XBXL10_1g34518 X. laevis.L
ENSEMBL 10.0 hcfc1 X. tropicalis
Xenbase 9.2 gene42881 X. laevis.S
Xenbase 9.1 gene2869 X. tropicalis
ENSEMBL 9.1 hcfc1 X. tropicalis
JGI 8.0 Xetrov14032619m.g X. tropicalis
JGI 7.2 Xelaev16074184m.g X. laevis.S
JGI 7.1 Xetro.H00295 X. tropicalis
JGI 6.0 XeXenL6RMv10015357m.g X. laevis.S
JGI 4.1 estExt_Genewise1.C_2750001 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2750044 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2750106 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2750114 X. tropicalis
ENSEMBL 4.1 ENSXETG00000014251 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2750012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2750006 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_275000002 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_275000012 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_275000006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2750135 X. tropicalis
JGI 4.1 e_gw1.275.1.1 X. tropicalis
JGI 4.1 e_gw1.275.107.1 X. tropicalis
JGI 4.1 e_gw1.275.115.1 X. tropicalis
JGI 4.1 e_gw1.275.136.1 X. tropicalis
JGI 4.1 e_gw1.275.45.1 X. tropicalis
JGI 4.1 gw1.275.1.1 X. tropicalis
JGI 4.1 gw1.275.107.1 X. tropicalis
JGI 4.1 gw1.275.115.1 X. tropicalis
JGI 4.1 gw1.275.136.1 X. tropicalis
JGI 4.1 gw1.275.45.1 X. tropicalis

mRNAs based on gene models(40)

Source Version Model Species
NCBI 10.1 XBmRNA65233 X. laevis.L
NCBI 10.1 XBmRNA71375 X. laevis.S
NCBI 10.0 mRNA005629 X. tropicalis
ENSEMBL 10.0 ENSXETT00000031201 X. tropicalis
Xenbase 9.2 rna85987 X. laevis.S
ENSEMBL 9.1 ENSXETT00000087637 X. tropicalis
ENSEMBL 9.1 ENSXETT00000089905 X. tropicalis
ENSEMBL 9.1 ENSXETT00000094504 X. tropicalis
Xenbase 9.1 rna9430 X. tropicalis
ENSEMBL 9.1 ENSXETT00000031201 X. tropicalis
ENSEMBL 9.1 ENSXETT00000078262 X. tropicalis
ENSEMBL 9.1 ENSXETT00000080744 X. tropicalis
ENSEMBL 9.1 ENSXETT00000082068 X. tropicalis
JGI 8.0 Xetrov14032619m X. tropicalis
JGI 7.2 Xelaev16074184m X. laevis.S
JGI 7.1 Xetro.H00295.3 X. tropicalis
JGI 7.1 Xetro.H00295.2 X. tropicalis
JGI 7.1 Xetro.H00295.1 X. tropicalis
JGI 6.0 XeXenL6RMv10015357m X. laevis.S
JGI 4.1 gw1.275.136.1 X. tropicalis
JGI 4.1 gw1.275.45.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2750135 X. tropicalis
JGI 4.1 e_gw1.275.1.1 X. tropicalis
JGI 4.1 e_gw1.275.115.1 X. tropicalis
JGI 4.1 e_gw1.275.136.1 X. tropicalis
JGI 4.1 e_gw1.275.45.1 X. tropicalis
JGI 4.1 ENSXETT00000031201 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_2750012 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_2750006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2750001 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2750044 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2750106 X. tropicalis
JGI 4.1 estExt_Genewise1.C_2750114 X. tropicalis
JGI 4.1 e_gw1.275.107.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_275000012 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_275000006 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_275000002 X. tropicalis
JGI 4.1 gw1.275.107.1 X. tropicalis
JGI 4.1 gw1.275.1.1 X. tropicalis
JGI 4.1 gw1.275.115.1 X. tropicalis

mRNAs from cDNA libraries (9)

Clone Accession Species Library Anatomy Stage
TGas043n24 CR761646 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
XM_012968986 X. tropicalis
XM_012968987 X. tropicalis
IMAGE:4959274 BC082658 X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
NM_001094520 X. laevis.S
XM_041574279 X. laevis.S
XM_041574280 X. laevis.S
XM_018241076 X. laevis.L
XM_041573149 X. laevis.L

ESTs (128)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7538544 CX450640 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas017a12 AL629343 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas018b15 AL633891 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas045p16 AL650231 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas040n05 AL653955 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas043n24 AL654989 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas076d20 AL775300 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas075k18 AL778147 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas091k18 AL959709 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas092d20 AL964082 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas097j14 AL971052 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7578981 CX417616 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7572514 CX435520 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8966237 EL662233 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:7569459 CX453076 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7540531 CX462087 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7536259 CX477202 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7564906 CX481261 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu005e20 AL640810 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu078o10 AL779851 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu079f02 AL784974 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu087m15 BX690031 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6976596 CF242413 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:6976596 CF264555 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TTbA072n03 CR432014 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTpA056f12 BX725643 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TTpA025b16 BX734775 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
XZT11387 CX311554 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7785117 CX316054 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7599031 CX343325 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7638661 CX383806 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7603504 CX395477 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7624374 CX401832 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7585033 CX415885 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7642354 CX797076 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7646147 CX803580 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7649039 CX808456 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7792936 CX814113 5' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7653830 CX823004 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7690318 CX915071 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7690720 CX915915 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7707690 CX960696 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:8924255 EL669611 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8929271 EL678451 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8921288 EL835766 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:9015523 EL862066 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9015957 EL862580 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9015523 EL862067 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:9015957 EL862581 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7642354 CX797075 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7599031 DR892061 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA052i05 CR589008 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7638661 CX383805 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7644813 CX800919 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7645248 CX801963 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
IMAGE:7646147 CX803579 3' X. tropicalis NIH_XGC_tropBrn2 brain frog
TGas076d20 BX752038 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu090o24 BX698830 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:8924255 EL669610 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:7569459 CX453075 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:8921288 EL835767 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7603504 CX395476 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:4462600 BG885563 3' X. tropicalis Wellcome CRC pCS107 tropicalis St10-12 whole organism NF stage 10 to NF stage 12
rst72g01 DC154393 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7538544 CX450639 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7624374 CX401831 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7578981 CX417615 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TGas092d20 BX764511 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7785117 CX316053 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:6863007 CA986510 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XL164g07 BJ613569 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL184o12 BJ618407 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL200m12 BJ622385 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL209j24 BJ624802 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGE:5570055 BQ735450 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL473l23ex BP694174 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL518f13ex BP706628 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk105g18ex DC037358 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk135h14ex DC047013 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
p12b8 AU245154 5' X. laevis.S Shibata Xenopus AEM lambda-ZAP II cDNA library endomesoderm NF stage 12.5 to NF stage 13
XL017c09 BJ032592 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL024g19 BJ035841 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:7976868 DR718751 5' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:7983656 DR727399 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8322145 DY546314 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8317753 DY563812 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:3200174 AW767452 5' X. laevis.S Harland stage 19-23 whole organism NF stage 19 to NF stage 23
XL074l22 BJ062016 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL084o14 BJ066023 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:4959274 BM180048 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
IMAGE:5572718 BQ733142 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
PBX0054D06 AW637103 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0085G06 AW639682 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
PBX0146F07 AW644984 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:7296210 CO385971 5' X. laevis.S Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGE:6635374 BU909686 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
XL471o12ex BP693886 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL088l16 BJ066943 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL100a06 BJ067243 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25