Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (0) GO Terms (4) Nucleotides (240) Proteins (57) Interactants (94) Wiki
XB-GENEPAGE-957475

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for shmt2 - All

Models - Gene (25)
Models - mRNA (40)
mRNAs (6)
ESTs (119)

Models - Gene (25)

Source Version Model Species
NCBI 10.0 XBXT10g011265 X. tropicalis
NCBI 10.1 XBXL10_1g8113 X. laevis.L
NCBI 10.1 XBXL10_1g10754 X. laevis.S
ENSEMBL 10.0 shmt2 X. tropicalis
JGI 9.1 Xelaev18013429m.g X. laevis.L
JGI 9.1 Xelaev18015919m.g X. laevis.S
Xenbase 9.1 gene29834 X. tropicalis
Xenbase 9.2 gene14671 X. laevis.L
Xenbase 9.2 gene19977 X. laevis.S
ENSEMBL 9.1 shmt2 X. tropicalis
JGI 8.0 Xetrov14009896m.g X. tropicalis
JGI 7.1 Xetro.K01663 X. tropicalis
JGI 7.2 Xelaev16069230m.g X. laevis.L
JGI 6.0 XeXenL6RMv10015819m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000017162 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_485000004 X. tropicalis
JGI 4.1 e_gw1.485.24.1 X. tropicalis
JGI 4.1 e_gw1.485.31.1 X. tropicalis
JGI 4.1 e_gw1.485.40.1 X. tropicalis
JGI 4.1 gw1.485.24.1 X. tropicalis
JGI 4.1 gw1.485.31.1 X. tropicalis
JGI 4.1 gw1.485.40.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_485000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_485000003 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_485000001 X. tropicalis

Models - mRNA (40)

Source Version Model Species
NCBI 10.0 mRNA055886 X. tropicalis
NCBI 10.1 XBmRNA15347 X. laevis.L
NCBI 10.1 XBmRNA20232 X. laevis.S
ENSEMBL 10.0 ENSXETT00000075541 X. tropicalis
ENSEMBL 10.0 ENSXETT00000073219 X. tropicalis
ENSEMBL 10.0 ENSXETT00000081022 X. tropicalis
ENSEMBL 10.0 ENSXETT00000080987 X. tropicalis
ENSEMBL 10.0 ENSXETT00000080755 X. tropicalis
ENSEMBL 10.0 ENSXETT00000061498 X. tropicalis
ENSEMBL 10.0 ENSXETT00000071151 X. tropicalis
JGI 9.1 Xelaev18013429m X. laevis.L
JGI 9.1 Xelaev18015919m X. laevis.S
Xenbase 9.1 rna57266 X. tropicalis
Xenbase 9.2 rna42757 X. laevis.L
Xenbase 9.2 rna58310 X. laevis.S
ENSEMBL 9.1 ENSXETT00000080987 X. tropicalis
ENSEMBL 9.1 ENSXETT00000037428 X. tropicalis
ENSEMBL 9.1 ENSXETT00000081022 X. tropicalis
ENSEMBL 9.1 ENSXETT00000080755 X. tropicalis
ENSEMBL 9.1 ENSXETT00000061498 X. tropicalis
ENSEMBL 9.1 ENSXETT00000070629 X. tropicalis
ENSEMBL 9.1 ENSXETT00000073219 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071095 X. tropicalis
ENSEMBL 9.1 ENSXETT00000071151 X. tropicalis
ENSEMBL 9.1 ENSXETT00000064109 X. tropicalis
JGI 8.0 Xetrov14009896m X. tropicalis
JGI 7.1 Xetro.K01663.1 X. tropicalis
JGI 7.2 Xelaev16069230m X. laevis.L
JGI 6.0 XeXenL6RMv10015819m X. laevis.L
JGI 4.1 fgenesh1_pg.C_scaffold_485000004 X. tropicalis
ENSEMBL 4.1 ENSXETT00000037428 X. tropicalis
JGI 4.1 e_gw1.485.24.1 X. tropicalis
JGI 4.1 e_gw1.485.31.1 X. tropicalis
JGI 4.1 e_gw1.485.40.1 X. tropicalis
JGI 4.1 gw1.485.24.1 X. tropicalis
JGI 4.1 gw1.485.31.1 X. tropicalis
JGI 4.1 gw1.485.40.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_485000001 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_485000003 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_485000001 X. tropicalis

mRNAs (6)

Clone Accession Species Library Anatomy Stage
NM_001007879 X. tropicalis
IMAGE:7027798 BC080148 X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
XM_012954056 X. tropicalis
IMAGE:5072921 BC079680 X. laevis.L
NM_001093900 X. laevis.L
XM_018250060 X. laevis.S

ESTs (119)

100 ESTs displayed. View all

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:9017087 EL864136 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8906054 EL798349 5' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:8926559 EL673479 5' X. tropicalis NICHD_XGC_tropThy1 thymus frog
IMAGE:8966092 EL658897 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:8954807 EL655229 5' X. tropicalis NICHD_XGC_tropInt_62 intestine frog
xtbs23L03 CN084113 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
XZT3945 CX399636 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
CAAO9435 CX957796 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7785381 CX316220 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7553618 CX492264 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7606214 CX366536 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7601341 CX364362 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
CAAO4654 CX935943 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7531740 CX432489 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7557317 CX505451 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7805082 DR841376 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7754108 DN055914 5' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:7716734 CX977582 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7711469 CX967969 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7707577 CX960573 5' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7664310 CX848991 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7596005 CX336113 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA025e11 CR581236 5' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
xthr40N06 CN114341 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr03K11 CN113341 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
CN101980 CN101980 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
CN094649 CN094649 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TGas122n09 AL970731 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas094d22 AL968505 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas114l05 AL959973 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas046m02 AL650128 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA028p08 BX743892 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TGas085m02 AL960575 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TNeu063l03 AL777678 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu080f23 AL776062 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TGas055p10 AL672778 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7027798 CF781953 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:6992856 CF264410 5' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:6988132 CF220573 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6989959 CF219115 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:6989959 CF219114 5' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
IMAGE:4461305 BG884701 5' X. tropicalis Wellcome CRC pCS107 tropicalis St10-12 whole organism NF stage 10 to NF stage 12
IMAGE:9017087 EL864137 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8906054 EL798350 3' X. tropicalis NICHD_XGC_tropTail_m tail NF stage 55 to NF stage 66
IMAGE:8926559 EL673478 3' X. tropicalis NICHD_XGC_tropThy1 thymus frog
xtbs23L03 CN084112 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
XZT3945 CX399635 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7785381 CX316219 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7553618 CX492263 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
CAAO4654 CX935942 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7664310 CX848990 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7805082 DR841375 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7754108 DN055913 3' X. tropicalis NIH_XGC_tropKid1 mesonephric kidney frog
IMAGE:7716734 CX977581 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7711469 CX967968 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7707577 CX960572 3' X. tropicalis NIH_XGC_tropTe5 testis frog
IMAGE:7557317 CX505450 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7531740 CX432488 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7606214 CX366535 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7601341 CX364361 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7596005 CX336112 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
THdA025e11 CR581237 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
xthr40N06 CN114340 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr03K11 CN113340 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
CN101979 CN101979 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
CN094648 CN094648 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
CN094647 CN094647 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TGas094f24 BX763430 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas114l05 BX755631 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas122n09 AL970730 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTpA028p08 BX743893 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TNeu080f23 BX695197 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu063l03 BX685573 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:6992856 CF264411 3' X. tropicalis NICHD_XGC_Emb6 whole organism NF stage 14 to NF stage 19
IMAGE:4462793 BG886183 3' X. tropicalis Wellcome CRC pCS107 tropicalis St10-12 whole organism NF stage 10 to NF stage 12
IMAGE:4461305 BG812371 3' X. tropicalis Wellcome CRC pCS107 tropicalis St10-12 whole organism NF stage 10 to NF stage 12
xl336o12 DC134049 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl315l21 DC127714 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl315p13 DC127781 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl335m04 DC133736 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl313d09 DC126999 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl280p09 DC117838 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xlk115f01ex DC040507 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8641649 EB733360 5' X. laevis.L NICHD_XGC_skin_m skin unspecified stage
IMAGE:8545006 EB483794 5' X. laevis.L NICHD_XGC_tail_m tail NF stage 56 to NF stage 62
IMAGE:8535581 EB466006 5' X. laevis.L NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
IMAGE:7980767 DR716231 5' X. laevis.L NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
XL457d22ex BP688385 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL507j16ex BP703209 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:7299002 CO388989 5' X. laevis.L Blumberg_Cho dorsal blastopore lip upper blastopore lip NF stage 7 to NF stage 9
IMAGp998O199026 BX847481 5' X. laevis.L Xenopus laevis oocyte oocyte NF stage 5 (16-cell) to NF stage 6 (32-cell)
IMAGp998L238302 BX853756 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
XL165e09 BJ613805 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL160j19 BJ612761 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL159j19 BJ612544 5' X. laevis.L NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL008a22 BJ041302 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:6863415 CA986888 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:4678870 BI349785 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:4957438 BI313356 5' X. laevis.L NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32