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Summary Expression Phenotypes Gene Literature (0) GO Terms (5) Nucleotides (197) Proteins (54) Interactants (53) Wiki
XB-GENEPAGE-487343

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for vars1 - All

RefSeq mRNAs(5)
Models - Gene (28)
Models - mRNA (43)
mRNAs (6)
ESTs (85)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
XM_002939466 valine--tRNA ligase 3948 bp XP_002939512 X. tropicalis
XM_004916912 XM_004916912.4 valine--tRNA ligase 3980 bp XP_004916969 X. tropicalis
XM_004916913 XM_004916913.4 valine--tRNA ligase 3880 bp XP_004916970 X. tropicalis
XM_004916911 XM_004916911.3 valine--tRNA ligase 3944 bp XP_004916968 X. tropicalis
NM_001094970 NM_001094970.1 valyl-tRNA synthetase 3922 bp NP_001088439 X. laevis.S

Models - Gene (28)

Source Version Model Species
NCBI 10.0 XBXT10g004554 X. tropicalis
NCBI 10.1 XBXL10_1g38299 X. laevis.S
JGI 9.1 Xelaev18039217m.g X. laevis.L
ENSEMBL 10.0 lsm2 X. tropicalis
JGI 9.1 Xelaev18042470m.g X. laevis.S
Xenbase 9.1 gene32855 X. tropicalis
Xenbase 9.2 gene2002 X. laevis.S
ENSEMBL 9.1 vars1 X. tropicalis
JGI 8.0 Xetrov14033966m.g X. tropicalis
JGI 7.1 Xetro.H00820 X. tropicalis
JGI 7.2 Xelaev16010057m.g X. laevis.S
JGI 6.0 XeXenL6RMv10045278m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000024076 X. tropicalis
JGI 4.1 fgenesh_pm_kg.C_scaffold_488000004 X. tropicalis
JGI 4.1 e_gw1.488.1.1 X. tropicalis
JGI 4.1 e_gw1.488.46.1 X. tropicalis
JGI 4.1 e_gw1.488.62.1 X. tropicalis
JGI 4.1 gw1.488.46.1 X. tropicalis
JGI 4.1 gw1.488.1.1 X. tropicalis
JGI 4.1 gw1.488.62.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4880010 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4880001 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4880046 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4880062 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_4880003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4880013 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_488000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_488000014 X. tropicalis

mRNAs based on gene models(43)

Source Version Model Species
NCBI 10.0 mRNA022674 X. tropicalis
NCBI 10.1 XBmRNA72367 X. laevis.S
ENSEMBL 10.0 ENSXETT00000070765 X. tropicalis
ENSEMBL 10.0 ENSXETT00000074116 X. tropicalis
ENSEMBL 10.0 ENSXETT00000108677 X. tropicalis
ENSEMBL 10.0 ENSXETT00000111210 X. tropicalis
JGI 9.1 Xelaev18042470m X. laevis.S
JGI 9.1 Xelaev18039217m X. laevis.L
Xenbase 9.1 rna62103 X. tropicalis
Xenbase 9.2 rna5819 X. laevis.S
ENSEMBL 9.1 ENSXETT00000104775 X. tropicalis
ENSEMBL 9.1 ENSXETT00000051937 X. tropicalis
ENSEMBL 9.1 ENSXETT00000070765 X. tropicalis
ENSEMBL 9.1 ENSXETT00000081114 X. tropicalis
ENSEMBL 9.1 ENSXETT00000074116 X. tropicalis
ENSEMBL 9.1 ENSXETT00000079171 X. tropicalis
ENSEMBL 9.1 ENSXETT00000100456 X. tropicalis
ENSEMBL 9.1 ENSXETT00000068325 X. tropicalis
ENSEMBL 9.1 ENSXETT00000081556 X. tropicalis
ENSEMBL 9.1 ENSXETT00000096847 X. tropicalis
JGI 8.0 Xetrov14033966m X. tropicalis
JGI 7.1 Xetro.H00820.4 X. tropicalis
JGI 7.1 Xetro.H00820.3 X. tropicalis
JGI 7.1 Xetro.H00820.2 X. tropicalis
JGI 7.1 Xetro.H00820.1 X. tropicalis
JGI 7.2 Xelaev16010057m X. laevis.S
JGI 6.0 XeXenL6RMv10045278m X. laevis.S
JGI 4.1 fgenesh_pm_kg.C_scaffold_488000004 X. tropicalis
ENSEMBL 4.1 ENSXETT00000051937 X. tropicalis
JGI 4.1 e_gw1.488.1.1 X. tropicalis
JGI 4.1 e_gw1.488.46.1 X. tropicalis
JGI 4.1 e_gw1.488.62.1 X. tropicalis
JGI 4.1 gw1.488.46.1 X. tropicalis
JGI 4.1 gw1.488.1.1 X. tropicalis
JGI 4.1 gw1.488.62.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_4880010 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4880001 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4880046 X. tropicalis
JGI 4.1 estExt_Genewise1.C_4880062 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_4880003 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_4880013 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_488000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_488000014 X. tropicalis

mRNAs from cDNA libraries (6)

Clone Accession Species Library Anatomy Stage
XM_002939466 X. tropicalis
XM_004916912 X. tropicalis
XM_004916913 X. tropicalis
XM_004916911 X. tropicalis
IMAGE:6864730 BC084762 X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
NM_001094970 X. laevis.S

ESTs (85)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7027905 CF781880 5' X. tropicalis XtSt10-30 whole organism NF stage 10 to NF stage 29 and 30
IMAGE:8920869 EL835189 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8885218 EL841757 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8885966 EL843131 5' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:7628916 CX383283 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7635065 CX338659 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
CAAO5728 CX937896 5' X. tropicalis NIH_XGC_tropTe5 testis frog
XZT11671 CX312010 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
st73e17 DC184780 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8964370 EL660327 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:8912886 EL824773 5' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:7691740 CX917091 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7598812 CX388251 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7599965 CX344253 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7610115 CX376666 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7625604 CX378621 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:8912886 EL824774 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8920869 EL835190 3' X. tropicalis NICHD_XGC_tropTe1 testis frog
IMAGE:8885218 EL841758 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
IMAGE:8885966 EL843132 3' X. tropicalis NICHD_XGC_trop_25 whole organism NF stage 25
CAAO5728 CX937895 3' X. tropicalis NIH_XGC_tropTe5 testis frog
rst73e17 DC154625 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
rst74e17 DC154884 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7713178 CX971298 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7718608 CX981077 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7719048 CX981855 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7661765 CX843067 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7598812 CX388250 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
TTpA028h03 BX730149 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TGas131p10 BX758945 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
xthr18L21 CN101019 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TTbA031f16 CR442704 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
THdA015h12 CR563220 3' X. tropicalis XGC-tailbud-head head NF stage 28 to NF stage 29 and 30
IMAGE:7635065 CX338658 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7625604 CX378620 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7659850 CX839897 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7691740 CX917090 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7695173 CX923349 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:5308548 BQ390526 3' X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
p13d3 AU245217 5' X. laevis.S Shibata Xenopus AEM lambda-ZAP II cDNA library endomesoderm NF stage 12.5 to NF stage 13
p15h7 AU245301 5' X. laevis.S Shibata Xenopus AEM lambda-ZAP II cDNA library endomesoderm NF stage 12.5 to NF stage 13
IMAGE:8823292 EG572056 5' X. laevis.S NICHD_XGC_int_m whole organism NF stage 56 to NF stage 62
xl268m08 DC114364 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
xl225i01 DC101281 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL505h03ex BP702546 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL506h02ex BP702856 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL450j14ex BP686206 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL433p22ex BP680149 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
IMAGE:8320780 DY560680 5' X. laevis.S NICHD_XGC_Emb10 whole organism NF stage 17 to NF stage 19
IMAGE:8532063 EB464120 5' X. laevis.S NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
IMAGE:8541854 EB473486 5' X. laevis.S NICHD_XGC_tail_m tail NF stage 56 to NF stage 62
XL179i17 BJ617131 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL204g10 BJ623368 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL216d12 BJ626862 5' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
IMAGp998D098294 BX845884 5' X. laevis.S NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
IMAGp998D088487 BX855558 5' X. laevis.S Wellcome CRC pRN3 oocyte oocyte unspecified stage
IMAGp998L118575 BX850531 5' X. laevis.S Kirschner embryo St10 14 whole organism NF stage 10 to NF stage 14
IMAGE:3557956 BI941184 5' X. laevis.S Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21
IMAGE:6864730 CA987998 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:5440139 CF288090 5' X. laevis.S NICHD_XGC_Emb4 whole organism NF stage 31 to NF stage 32
XL045i05 BJ038800 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL015a09 BJ031908 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL094o09 BJ071595 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:3398744 BE575834 5' X. laevis.S NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
IMAGE:3516442 BG017410 5' X. laevis.S Kirschner embryo St10 14 whole organism NF stage 10 to NF stage 14
IMAGE:3399905 BG162133 5' X. laevis.S NICHD_XGC_Emb3 whole organism NF stage 24 to NF stage 25
IMAGE:3437659 BG730153 5' X. laevis.S Wellcome CRC pRN3 oocyte oocyte unspecified stage
IMAGE:3472855 BI676190 5' X. laevis.S Wellcome CRC pRN3 oocyte oocyte unspecified stage
PBX0073H12 AW638754 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3200416 AW768223 5' X. laevis.S Harland stage 19-23 whole organism NF stage 19 to NF stage 23
IMAGE:8532063 EC276454 3' X. laevis.S NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
IMAGE:8541854 EC276833 3' X. laevis.S NICHD_XGC_tail_m tail NF stage 56 to NF stage 62
rxl268m08 DC079503 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
rxl225i01 DC067307 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL450j14ex BP722013 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL505h03ex BP735480 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL179i17 BJ633638 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL204g10 BJ640019 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL216d12 BJ643214 3' X. laevis.S NIBB Mochii normalized Xenopus early gastrula library whole organism NF stage 10.5
XL015a09 BJ046948 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL045i05 BJ050751 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL094o09 BJ091351 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:3516442 BG017350 3' X. laevis.S Kirschner embryo St10 14 whole organism NF stage 10 to NF stage 14
IMAGE:3472855 BI449418 3' X. laevis.S Wellcome CRC pRN3 oocyte oocyte unspecified stage
IMAGE:3557956 BI941183 3' X. laevis.S Wellcome CRC pRN3 St13 17 egg animal cap whole organism NF stage 13 to NF stage 21