Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (0) GO Terms (3) Nucleotides (123) Proteins (52) Interactants (32) Wiki
XB-GENEPAGE-5789581

Show:     All X. tropicalis X. laevis.L

Nucleotide sequences for rnf170 - All

RefSeq mRNAs(12)
Models - Gene (29)
Models - mRNA (29)
mRNAs (15)
ESTs (17)

RefSeq mRNAs (12)

Accession Version Protein Name Length Protein Species
NM_001016872 NM_001016872.2 E3 ubiquitin-protein ligase RNF170 1362 bp NP_001016872 X. tropicalis
NM_001095316 NM_001095316.1 E3 ubiquitin-protein ligase RNF170 1084 bp NP_001088785 X. laevis.L
XM_018239883 XM_018239883.2 E3 ubiquitin-protein ligase RNF170-like 5079 bp XP_018095372 X. laevis.S
XM_018239881 XM_018239881.2 E3 ubiquitin-protein ligase RNF170-like 5073 bp XP_018095370 X. laevis.S
XM_018239880 XM_018239880.2 E3 ubiquitin-protein ligase RNF170-like 5096 bp XP_018095369 X. laevis.S
XM_018239879 XM_018239879.2 E3 ubiquitin-protein ligase RNF170-like 4951 bp XP_018095368 X. laevis.S
XM_018239878 XM_018239878.2 E3 ubiquitin-protein ligase RNF170-like 4969 bp XP_018095367 X. laevis.S
XM_018248961 XM_018248961.2 E3 ubiquitin-protein ligase RNF170 isoform X2 1049 bp XP_018104450 X. laevis.L
XM_018248953 XM_018248953.2 E3 ubiquitin-protein ligase RNF170 isoform X2 1039 bp XP_018104442 X. laevis.L
XM_018248946 XM_018248946.2 E3 ubiquitin-protein ligase RNF170 isoform X2 1016 bp XP_018104435 X. laevis.L
XM_018248927 XM_018248927.2 E3 ubiquitin-protein ligase RNF170 isoform X1 1119 bp XP_018104416 X. laevis.L
XM_018248918 XM_018248918.2 E3 ubiquitin-protein ligase RNF170 isoform X1 1089 bp XP_018104407 X. laevis.L

Models - Gene (29)

Source Version Model Species
NCBI 10.0 XBXT10g018574 X. tropicalis
NCBI 10.1 XBXL10_1g1871 X. laevis.L
NCBI 10.1 XBXL10_1g4649 X. laevis.S
ENSEMBL 10.0 rnf170 X. tropicalis
JGI 9.1 Xelaev18006597m.g X. laevis.L
JGI 9.1 Xelaev18001177m.g X. laevis.S
Xenbase 9.1 gene21331 X. tropicalis
Xenbase 9.2 gene1568 X. laevis.L
Xenbase 9.2 gene3796 X. laevis.S
ENSEMBL 9.1 rnf170 X. tropicalis
JGI 8.0 Xetrov14003069m.g X. tropicalis
JGI 7.1 Xetro.A02000 X. tropicalis
JGI 7.2 Xelaev16069618m.g X. laevis.L
JGI 6.0 XeXenL6RMv10035111m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000027376 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_6460009 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_6460016 X. tropicalis
JGI 4.1 e_gw1.646.25.1 X. tropicalis
JGI 4.1 e_gw1.646.45.1 X. tropicalis
JGI 4.1 e_gw1.646.56.1 X. tropicalis
JGI 4.1 gw1.646.25.1 X. tropicalis
JGI 4.1 gw1.646.45.1 X. tropicalis
JGI 4.1 gw1.646.56.1 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6460025 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6460045 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6460056 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6460028 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_646000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_646000028 X. tropicalis

mRNAs based on gene models(29)

Source Version Model Species
NCBI 10.0 mRNA091714 X. tropicalis
NCBI 10.1 XBmRNA3337 X. laevis.L
NCBI 10.1 XBmRNA8637 X. laevis.S
ENSEMBL 10.0 ENSXETT00000057130 X. tropicalis
JGI 9.1 Xelaev18006597m X. laevis.L
JGI 9.1 Xelaev18001177m X. laevis.S
Xenbase 9.1 rna43668 X. tropicalis
Xenbase 9.2 rna11050 X. laevis.S
Xenbase 9.2 rna4572 X. laevis.L
ENSEMBL 9.1 ENSXETT00000057130 X. tropicalis
JGI 8.0 Xetrov14003069m X. tropicalis
JGI 7.1 Xetro.A02000.1 X. tropicalis
JGI 7.2 Xelaev16069618m X. laevis.L
JGI 6.0 XeXenL6RMv10035111m X. laevis.L
JGI 4.1 estExt_fgenesh1_pm.C_6460009 X. tropicalis
ENSEMBL 4.1 ENSXETT00000057130 X. tropicalis
JGI 4.1 e_gw1.646.25.1 X. tropicalis
JGI 4.1 e_gw1.646.45.1 X. tropicalis
JGI 4.1 e_gw1.646.56.1 X. tropicalis
JGI 4.1 gw1.646.25.1 X. tropicalis
JGI 4.1 gw1.646.45.1 X. tropicalis
JGI 4.1 gw1.646.56.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_6460016 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6460025 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6460045 X. tropicalis
JGI 4.1 estExt_Genewise1.C_6460056 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_6460028 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_646000004 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_646000028 X. tropicalis

mRNAs from cDNA libraries (15)

Clone Accession Species Library Anatomy Stage
NM_001016872 X. tropicalis
TGas116k14 CR848624 X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:7561897 BC157351 X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7210849 BC087450 X. laevis.L
NM_001095316 X. laevis.L
XM_018239883 X. laevis.S
XM_018239881 X. laevis.S
XM_018239880 X. laevis.S
XM_018239879 X. laevis.S
XM_018239878 X. laevis.S
XM_018248961 X. laevis.L
XM_018248953 X. laevis.L
XM_018248946 X. laevis.L
XM_018248927 X. laevis.L
XM_018248918 X. laevis.L

ESTs (17)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7561897 CX465427 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7567787 CX508943 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7603855 CX395559 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7613888 CX389788 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7577010 CX423062 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTpA056p17 BX726377 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TGas116k14 AL967293 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TTbA014f02 CR414955 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
TTbA014f02 CR414956 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7613888 CX389787 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7561897 CX465426 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7567787 CX508942 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7603855 DR893388 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:7577010 CX423061 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTpA002k02 BX708307 3' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
TGas116k14 BX755901 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
TGas053f03 BX761872 3' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12