Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Phenotypes Gene Literature (2) GO Terms (42) Nucleotides (91) Proteins (48) Interactants (80) Wiki
XB-GENEPAGE-5918289

Show:     All X. tropicalis X. laevis

Nucleotide sequences for hmbs - All

RefSeq mRNAs(4)
Models - Gene (21)
Models - mRNA (31)
mRNAs (6)
ESTs (18)

RefSeq mRNAs (4)

Accession Version Protein Name Length Protein Species
NM_001005635 NM_001005635.1 porphobilinogen deaminase 1866 bp NP_001005635 X. tropicalis
XM_012966350 XM_012966350.3 porphobilinogen deaminase isoform X1 1815 bp XP_012821804 X. tropicalis
NM_001096230 NM_001096230.1 hydroxymethylbilane synthase L homeolog 1875 bp NP_001089699 X. laevis.L
XM_041568591 XM_041568591.1 XP_041424525.1 hydroxymethylbilane synthase L homeolog isoform X1 1804 bp XP_041424525 X. laevis.L

Models - Gene (21)

Source Version Model Species
NCBI 10.1 XBXL10_1g31065 X. laevis.L
NCBI 10.0 XBXT10g015795 X. tropicalis
ENSEMBL 10.0 hmbs X. tropicalis
Xenbase 9.2 gene42835 X. laevis.L
Xenbase 9.1 gene21792 X. tropicalis
ENSEMBL 9.1 hmbs X. tropicalis
JGI 8.0 Xetrov14030635m.g X. tropicalis
JGI 7.2 Xelaev16038887m.g X. laevis.L
JGI 7.1 Xetro.K04011 X. tropicalis
JGI 6.0 XeXenL6RMv10054536m.g X. laevis.L
JGI 6.0 XeXenL6RMv10023238m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000016285 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_3704000001 X. tropicalis
JGI 4.1 e_gw1.3704.2.1 X. tropicalis
JGI 4.1 e_gw1.3704.3.1 X. tropicalis
JGI 4.1 gw1.3704.1.1 X. tropicalis
JGI 4.1 gw1.3704.2.1 X. tropicalis
JGI 4.1 gw1.3704.3.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_37040001 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_37040001 X. tropicalis
JGI 4.1 e_gw1.3704.1.1 X. tropicalis

mRNAs based on gene models(31)

Source Version Model Species
NCBI 10.1 XBmRNA58733 X. laevis.L
ENSEMBL 10.0 ENSXETT00000061909 X. tropicalis
ENSEMBL 10.0 ENSXETT00000061830 X. tropicalis
ENSEMBL 10.0 ENSXETT00000035541 X. tropicalis
NCBI 10.0 mRNA078131 X. tropicalis
Xenbase 9.2 rna85896 X. laevis.L
Xenbase 9.1 rna44444 X. tropicalis
ENSEMBL 9.1 ENSXETT00000035541 X. tropicalis
ENSEMBL 9.1 ENSXETT00000046596 X. tropicalis
ENSEMBL 9.1 ENSXETT00000061830 X. tropicalis
ENSEMBL 9.1 ENSXETT00000091364 X. tropicalis
ENSEMBL 9.1 ENSXETT00000098021 X. tropicalis
ENSEMBL 9.1 ENSXETT00000104716 X. tropicalis
ENSEMBL 9.1 ENSXETT00000061909 X. tropicalis
ENSEMBL 9.1 ENSXETT00000081948 X. tropicalis
JGI 8.0 Xetrov14030635m X. tropicalis
JGI 7.2 Xelaev16038887m X. laevis.L
JGI 7.1 Xetro.K04011.1 X. tropicalis
JGI 6.0 XeXenL6RMv10054536m X. laevis.L
JGI 6.0 XeXenL6RMv10023238m X. laevis.L
JGI 4.1 gw1.3704.2.1 X. tropicalis
JGI 4.1 gw1.3704.3.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_3704000001 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_37040001 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_37040001 X. tropicalis
ENSEMBL 4.1 ENSXETT00000046596 X. tropicalis
ENSEMBL 4.1 ENSXETT00000035541 X. tropicalis
JGI 4.1 e_gw1.3704.3.1 X. tropicalis
JGI 4.1 e_gw1.3704.2.1 X. tropicalis
JGI 4.1 e_gw1.3704.1.1 X. tropicalis
JGI 4.1 gw1.3704.1.1 X. tropicalis

mRNAs from cDNA libraries (6)

Clone Accession Species Library Anatomy Stage
IMAGE:5307306 BC074624 X. tropicalis NICHD_XGC_Emb5 whole organism NF stage 10 to NF stage 13
NM_001005635 X. tropicalis
XM_012966350 X. tropicalis
IMAGE:7391702 BC106357 X. laevis.L
NM_001096230 X. laevis.L
XM_041568591 X. laevis.L

ESTs (18)

Clone Accession 5'/3' Species Library Anatomy Stage
TGas029j10 AL646854 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
IMAGE:8965382 EL655370 5' X. tropicalis NICHD_XGC_tropInt_66 intestine unspecified stage
IMAGE:7735027 DN020333 3' X. tropicalis NIH_XGC_tropLiv1 liver frog
IMAGE:7615691 CX391905 3' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
IMAGE:3380586 BE507359 5' X. laevis.L Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9
IMAGE:6864286 CA987603 5' X. laevis.L NICHD_XGC_Emb1 whole organism NF stage 10
PBX0166A04 AW646631 5' X. laevis.L Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:6936050 CB984091 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGE:6936050 CD811152 5' X. laevis.L NICHD_XGC_Tad2 whole organism NF stage 62
IMAGp998O198246 BX846742 5' X. laevis.L Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9
xl272a06 DC115323 5' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL492m08ex BP707876 5' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL027a08 BJ041603 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:7977810 DR723781 5' X. laevis.L NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
IMAGE:3380586 BE491656 3' X. laevis.L Wellcome CRC pSK animal cap animal cap NF stage 7 to NF stage 9
rxl272a06 DC080406 3' X. laevis.L Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
XL492m08ex BP739877 3' X. laevis.L Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL027a08 BJ050895 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15