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Summary Expression Phenotypes Gene Literature (4) GO Terms (23) Nucleotides (159) Proteins (70) Interactants (37) Wiki
XB-GENEPAGE-950804

Show:     All X. tropicalis X. laevis

Nucleotide sequences for sh3rf1 - All

RefSeq mRNAs(10)
Models - Gene (26)
Models - mRNA (35)
mRNAs (16)
ESTs (50)

RefSeq mRNAs (10)

Accession Version Protein Name Length Protein Species
NM_001015973 NM_001015973.2 E3 ubiquitin-protein ligase SH3RF1 3258 bp NP_001015973 X. tropicalis
XM_012961866 XM_012961866.3 E3 ubiquitin-protein ligase SH3RF1 isoform X1 3315 bp XP_012817320 X. tropicalis
XM_012961871 XM_012961871.3 E3 ubiquitin-protein ligase SH3RF1 isoform X2 3234 bp XP_012817325 X. tropicalis
XM_012961878 XM_012961878.3 E3 ubiquitin-protein ligase SH3RF1 isoform X2 3204 bp XP_012817332 X. tropicalis
NM_001091345 NM_001091345.1 E3 ubiquitin-protein ligase SH3RF1 3115 bp NP_001084814 X. laevis.S
XM_018235930 XM_018235930.2 E3 ubiquitin-protein ligase SH3RF1 isoform X1 3189 bp XP_018091419 X. laevis.S
XM_041574820 XM_041574820.1 XP_041430754.1 E3 ubiquitin-protein ligase SH3RF1 isoform X1 4058 bp XP_041430754 X. laevis.S
XM_018230906 XM_018230906.2 E3 ubiquitin-protein ligase SH3RF1 isoform X1 3316 bp XP_018086395 X. laevis.L
XM_018230913 XM_018230913.2 E3 ubiquitin-protein ligase SH3RF1 isoform X1 3393 bp XP_018086402 X. laevis.L
XM_018230921 XM_018230921.2 E3 ubiquitin-protein ligase SH3RF1 isoform X2 3204 bp XP_018086410 X. laevis.L

Models - Gene (26)

Source Version Model Species
NCBI 10.1 XBXL10_1g3884 X. laevis.S
NCBI 10.1 XBXL10_1g925 X. laevis.L
NCBI 10.0 XBXT10g002884 X. tropicalis
ENSEMBL 10.0 sh3rf1 X. tropicalis
Xenbase 9.2 gene10729 X. laevis.S
Xenbase 9.2 gene3039 X. laevis.L
JGI 9.1 Xelaev18009169m.g X. laevis.S
JGI 9.1 Xelaev18005420m.g X. laevis.L
Xenbase 9.1 gene4984 X. tropicalis
ENSEMBL 9.1 sh3rf1 X. tropicalis
JGI 8.0 Xetrov14004816m.g X. tropicalis
JGI 7.2 Xelaev16013686m.g X. laevis.S
JGI 7.1 Xetro.A02926 X. tropicalis
JGI 6.0 XeXenL6RMv10019259m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000004943 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_54000016 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_54000006 X. tropicalis
JGI 4.1 gw1.54.59.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_54000063 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_54000062 X. tropicalis
JGI 4.1 gw1.54.137.1 X. tropicalis
JGI 4.1 gw1.54.114.1 X. tropicalis
JGI 4.1 e_gw1.54.59.1 X. tropicalis
JGI 4.1 e_gw1.54.137.1 X. tropicalis
JGI 4.1 e_gw1.54.114.1 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_54000016 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.1 XBmRNA7105 X. laevis.S
NCBI 10.1 XBmRNA1403 X. laevis.L
NCBI 10.0 mRNA014633 X. tropicalis
ENSEMBL 10.0 ENSXETT00000110119 X. tropicalis
ENSEMBL 10.0 ENSXETT00000010794 X. tropicalis
ENSEMBL 10.0 ENSXETT00000010793 X. tropicalis
ENSEMBL 10.0 ENSXETT00000010795 X. tropicalis
ENSEMBL 10.0 ENSXETT00000074251 X. tropicalis
Xenbase 9.2 rna31181 X. laevis.S
Xenbase 9.2 rna8801 X. laevis.L
JGI 9.1 Xelaev18005420m X. laevis.L
ENSEMBL 9.1 ENSXETT00000010795 X. tropicalis
ENSEMBL 9.1 ENSXETT00000010793 X. tropicalis
ENSEMBL 9.1 ENSXETT00000074251 X. tropicalis
ENSEMBL 9.1 ENSXETT00000010794 X. tropicalis
JGI 9.1 Xelaev18009169m X. laevis.S
Xenbase 9.1 rna16242 X. tropicalis
JGI 8.0 Xetrov14004816m X. tropicalis
JGI 7.2 Xelaev16013686m X. laevis.S
JGI 7.1 Xetro.A02926.2 X. tropicalis
JGI 7.1 Xetro.A02926.1 X. tropicalis
JGI 6.0 XeXenL6RMv10019259m X. laevis.S
JGI 4.1 fgenesh1_pm.C_scaffold_54000016 X. tropicalis
JGI 4.1 e_gw1.54.137.1 X. tropicalis
JGI 4.1 e_gw1.54.59.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000010793 X. tropicalis
ENSEMBL 4.1 ENSXETT00000010795 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_54000016 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_54000062 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_54000063 X. tropicalis
JGI 4.1 e_gw1.54.114.1 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_54000006 X. tropicalis
JGI 4.1 gw1.54.114.1 X. tropicalis
JGI 4.1 gw1.54.137.1 X. tropicalis
JGI 4.1 gw1.54.59.1 X. tropicalis

mRNAs from cDNA libraries (16)

Clone Accession Species Library Anatomy Stage
IMAGE:7567249 BC167346 X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7715695 BC169143 X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:9040271 BC171011 X. tropicalis
TNeu006c09 CR848380 X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
NM_001015973 X. tropicalis
XM_012961866 X. tropicalis
XM_012961871 X. tropicalis
XM_012961878 X. tropicalis
AY762093 X. laevis.S
IMAGE:6859822 BC070823 X. laevis.S
NM_001091345 X. laevis.S
XM_018235930 X. laevis.S
XM_041574820 X. laevis.S
XM_018230906 X. laevis.L
XM_018230913 X. laevis.L
XM_018230921 X. laevis.L

ESTs (50)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:5336375 BQ522343 5' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
TTbA030a15 CR427803 5' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7739878 DN030003 5' X. tropicalis NIH_XGC_tropLiv1 liver frog
TNeu006c09 AL637237 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu028b14 AL650568 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu133b16 AL790036 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
IMAGE:7518259 CX750238 5' X. tropicalis NIH_XGC_tropNeu5 whole organism NF stage 14 to NF stage 18
IMAGE:7524763 CX439646 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7540699 CX461923 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7715695 CX975636 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7686993 CX908220 5' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7555662 CX502989 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TTpA004j09 BX709743 5' X. tropicalis XGC-tadpole whole organism NF stage 35 and 36 to NF stage 40
xtbs09F06 CN094463 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7658795 CX838130 5' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:7672594 CX881808 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7567249 CX507548 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7719550 CX983050 5' X. tropicalis NIH_XGC_tropInt1 intestine frog
TTbA030a15 CR427804 3' X. tropicalis XGC-tailbud whole organism NF stage 28 to NF stage 29 and 30
IMAGE:7555662 CX502988 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7719550 CX983049 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7658795 CX838129 3' X. tropicalis NIH_XGC_tropBrn3 brain frog
IMAGE:5336375 BQ522342 3' X. tropicalis NICHD_XGC_Emb7 whole organism NF stage 20 to NF stage 27
IMAGE:7672594 CX881807 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
IMAGE:7715695 CX975635 3' X. tropicalis NIH_XGC_tropInt1 intestine frog
IMAGE:7686993 CX908219 3' X. tropicalis NIH_XGC_tropTe4 testis frog
IMAGE:7567249 CX507547 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7540699 CX461922 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
XL007j20 BJ031538 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:4782987 BI449829 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGp998A0410646 BX853253 5' X. laevis.S Soares NXEG egg unfertilized egg stage
IMAGE:6869225 CA984876 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
xlk58h23ex DC035164 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
IMAGE:8643848 EB728768 5' X. laevis.S NICHD_XGC_skin_m skin unspecified stage
XL008g24 BJ041424 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL008p06 BJ041580 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:7975889 DR729229 5' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
AW765221 AW765221 5' X. laevis.S Xenopus laevis tadpole stage 24 whole organism NF stage 24
XL104n16 BJ057694 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL066n11 BJ060790 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL097f06 BJ073547 5' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
rxlk58h23ex DC002320 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxl275a07 DC081194 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:4782987 BI450331 3' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL104n16 BJ076170 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL066n11 BJ079006 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL097f06 BJ091492 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
IMAGE:7975889 DR729272 3' X. laevis.S NICHD_XGC_Emb9 whole organism NF stage 17 to NF stage 19
XL008p06 BJ056159 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL007j20 BJ046506 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15