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Summary Expression Phenotypes Gene Literature (1) GO Terms (18) Nucleotides (124) Proteins (46) Interactants (62) Wiki
XB-GENEPAGE-986007

Show:     All X. tropicalis X. laevis

Nucleotide sequences for lsm8 - All

RefSeq mRNAs(3)
Models - Gene (33)
Models - mRNA (35)
mRNAs (4)
ESTs (42)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
XM_002934957 XM_002934957.5 LSM8 homolog, U6 small nuclear RNA associated 581 bp XP_002935003 X. tropicalis
NM_001091246 NM_001091246.1 LSM8 homolog, U6 small nuclear RNA associated S homeolog 515 bp NP_001084715 X. laevis.S
XM_018252565 XM_018252565.2 U6 snRNA-associated Sm-like protein LSm8 579 bp XP_018108054 X. laevis.L

Models - Gene (33)

Source Version Model Species
NCBI 10.1 XBXL10_1g16163 X. laevis.S
NCBI 10.1 XBXL10_1g12686 X. laevis.L
NCBI 10.0 XBXT10g000141 X. tropicalis
ENSEMBL 10.0 lsm8 X. tropicalis
Xenbase 9.2 gene15260 X. laevis.L
Xenbase 9.2 gene8460 X. laevis.S
JGI 9.1 Xelaev18017652m.g X. laevis.L
JGI 9.1 Xelaev18021064m.g X. laevis.S
Xenbase 9.1 gene1402 X. tropicalis
ENSEMBL 9.1 lsm8 X. tropicalis
JGI 8.0 Xetrov14014450m.g X. tropicalis
JGI 7.2 Xelaev16015349m.g X. laevis.S
JGI 7.1 Xetro.C01831 X. tropicalis
JGI 6.0 XeXenL6RMv10000632m.g X. laevis.S
ENSEMBL 4.1 ENSXETG00000021829 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_121000006 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_121000007 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_121000026 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_121000027 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1210027 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1210026 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1210007 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1210006 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1210103 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1210075 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1210016 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1210014 X. tropicalis
JGI 4.1 e_gw1.121.75.1 X. tropicalis
JGI 4.1 e_gw1.121.103.1 X. tropicalis
JGI 4.1 gw1.121.75.1 X. tropicalis
JGI 4.1 gw1.121.16.1 X. tropicalis
JGI 4.1 gw1.121.103.1 X. tropicalis
JGI 4.1 e_gw1.121.16.1 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.1 XBmRNA30301 X. laevis.S
NCBI 10.1 XBmRNA23797 X. laevis.L
ENSEMBL 10.0 ENSXETT00000101296 X. tropicalis
NCBI 10.0 mRNA000821 X. tropicalis
ENSEMBL 10.0 ENSXETT00000047201 X. tropicalis
Xenbase 9.2 rna44536 X. laevis.L
Xenbase 9.2 rna24629 X. laevis.S
JGI 9.1 Xelaev18017652m X. laevis.L
ENSEMBL 9.1 ENSXETT00000047201 X. tropicalis
Xenbase 9.1 rna4503 X. tropicalis
JGI 9.1 Xelaev18021064m X. laevis.S
ENSEMBL 9.1 ENSXETT00000101296 X. tropicalis
JGI 8.0 Xetrov14014450m X. tropicalis
JGI 7.2 Xelaev16015349m X. laevis.S
JGI 7.1 Xetro.C01831.1 X. tropicalis
JGI 6.0 XeXenL6RMv10000632m X. laevis.S
JGI 4.1 gw1.121.103.1 X. tropicalis
JGI 4.1 gw1.121.16.1 X. tropicalis
JGI 4.1 gw1.121.75.1 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_121000007 X. tropicalis
JGI 4.1 e_gw1.121.16.1 X. tropicalis
JGI 4.1 e_gw1.121.75.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000047201 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1210006 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_1210007 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1210026 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_1210027 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_1210014 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1210016 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1210075 X. tropicalis
JGI 4.1 estExt_Genewise1.C_1210103 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_121000006 X. tropicalis
JGI 4.1 e_gw1.121.103.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_121000026 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_121000027 X. tropicalis

mRNAs from cDNA libraries (4)

Clone Accession Species Library Anatomy Stage
XM_002934957 X. tropicalis
IMAGE:4405372 BC068881 X. laevis.S NICHD_XGC_Emb2 whole organism NF stage 17 to NF stage 19
NM_001091246 X. laevis.S
XM_018252565 X. laevis.L

ESTs (42)

Clone Accession 5'/3' Species Library Anatomy Stage
TGas129m18 AL965426 5' X. tropicalis XGC-gastrula whole organism NF stage 10.5 to NF stage 12
st19l16 DC168472 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
xtbs11D23 CN076214 5' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
IMAGE:7532041 CX421918 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
XZT13221 CX321431 5' X. tropicalis NIH_XGC_tropTad5 whole organism NF stage 35 and 36 to NF stage 41
xthr21B11 CN103619 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TNeu084a04 AL804026 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
rst19l16 DC138388 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7532041 CX421917 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
xthr21B11 CN103618 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xtbs11D23 CN076213 3' X. tropicalis Xenopus tropicalis xtbs plasmid library central nervous system NF stage 58 to NF stage 64
TNeu084a04 BX692504 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xl306d02 DC124928 5' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
PBX0112E10 AW641977 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGp998P1611403 BX855428 5' X. laevis.S Soares NXEG egg unfertilized egg stage
IMAGE:3749403 BF615165 5' X. laevis.S Xenopus laevis gastrula non normalized whole organism NF stage 10.5 to NF stage 11.5
IMAGp998G049034 BX845645 5' X. laevis.S Cho Li treated gastrula whole organism NF stage 10 to NF stage 12.5
XL427j13ex BP677692 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL428p21ex BP678157 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL443j17ex BP683648 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL461m23ex BP690530 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL503p24ex BP702132 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL510k20ex BP704087 5' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
xlk116p24ex DC041027 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk129o23ex DC045235 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk79f19ex DC060751 5' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
PBX0079H07 AW639210 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL032j14 BJ042716 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL427j13ex BP714795 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL425d17ex BP714404 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
rxl228g24 DC068121 3' X. laevis.S Yamamoto/Hyodo-Miura NIBB/NBRP Xenopus DMZ pCS2p+ cDNA library Keller explant NF stage 10.5 to NF stage 15
IMAGE:3749403 BG021780 3' X. laevis.S Xenopus laevis gastrula non normalized whole organism NF stage 10.5 to NF stage 11.5
XL094b01 BJ091082 3' X. laevis.S NIBB Mochii normalized Xenopus tailbud library whole organism NF stage 25
XL032j14 BJ056666 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL503p24ex BP735077 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL461m23ex BP725111 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL443j17ex BP719712 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
XL510k20ex BP736945 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5
rxlk116p24ex DC008121 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk129o23ex DC012072 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk79f19ex DC027270 3' X. laevis.S Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL428p21ex BP715204 3' X. laevis.S Osada Taira anterior neuroectoderm (ANE) pCS105 cDNA library ectoderm NF stage 12.5