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Summary Expression Phenotypes Gene Literature (16) GO Terms (5) Nucleotides (124) Proteins (41) Interactants (156) Wiki
XB-GENEPAGE-949743

Show:     All X. tropicalis X. laevis

Nucleotide sequences for tcim - All

RefSeq mRNAs(3)
Models - Gene (31)
Models - mRNA (31)
mRNAs (4)
ESTs (39)

RefSeq mRNAs (3)

Accession Version Protein Name Length Protein Species
XM_002932578 XM_002932578.5 transcriptional and immune response regulator 833 bp XP_002932624 X. tropicalis
XM_018253471 XM_018253471.2 transcriptional and immune response regulator 1140 bp XP_018108960 X. laevis.L
XM_018255100 XM_018255100.2 transcriptional and immune response regulator 883 bp XP_018110589 X. laevis.S

Models - Gene (31)

Source Version Model Species
NCBI 10.1 XBXL10_1g15383 X. laevis.S
NCBI 10.1 XBXL10_1g13604 X. laevis.L
NCBI 10.0 XBXT10g008605 X. tropicalis
ENSEMBL 10.0 tcim X. tropicalis
Xenbase 9.2 gene36545 X. laevis.L
Xenbase 9.2 gene15608 X. laevis.S
JGI 9.1 Xelaev18018657m.g X. laevis.L
JGI 9.1 Xelaev18020243m.g X. laevis.S
Xenbase 9.1 gene20001 X. tropicalis
ENSEMBL 9.1 tcim X. tropicalis
JGI 7.1 Xetro.C00410 X. tropicalis
JGI 6.0 XeXenL6RMv10015593m.g X. laevis.L
ENSEMBL 4.1 ENSXETG00000007782 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_300104 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_30000107 X. tropicalis
JGI 4.1 fgenesh1_kg.C_scaffold_30000030 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_30000108 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_30000041 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_300039 X. tropicalis
JGI 4.1 e_gw1.30.166.1 X. tropicalis
JGI 4.1 e_gw1.30.306.1 X. tropicalis
JGI 4.1 e_gw1.30.520.1 X. tropicalis
JGI 4.1 gw1.30.166.1 X. tropicalis
JGI 4.1 gw1.30.306.1 X. tropicalis
JGI 4.1 gw1.30.520.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_300078 X. tropicalis
JGI 4.1 estExt_Genewise1.C_300166 X. tropicalis
JGI 4.1 estExt_Genewise1.C_300306 X. tropicalis
JGI 4.1 estExt_Genewise1.C_300520 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_300028 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_300103 X. tropicalis

mRNAs based on gene models(31)

Source Version Model Species
NCBI 10.1 XBmRNA25857 X. laevis.L
NCBI 10.1 XBmRNA28731 X. laevis.S
NCBI 10.0 mRNA042648 X. tropicalis
ENSEMBL 10.0 ENSXETT00000016998 X. tropicalis
Xenbase 9.2 rna45575 X. laevis.S
Xenbase 9.2 rna76928 X. laevis.L
JGI 9.1 Xelaev18020243m X. laevis.S
Xenbase 9.1 rna41547 X. tropicalis
JGI 9.1 Xelaev18018657m X. laevis.L
ENSEMBL 9.1 ENSXETT00000016998 X. tropicalis
JGI 7.1 Xetro.C00410.1 X. tropicalis
JGI 6.0 XeXenL6RMv10015593m X. laevis.L
JGI 4.1 fgenesh1_kg.C_scaffold_30000030 X. tropicalis
JGI 4.1 e_gw1.30.166.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_30000108 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_30000041 X. tropicalis
JGI 4.1 gw1.30.166.1 X. tropicalis
JGI 4.1 gw1.30.306.1 X. tropicalis
JGI 4.1 gw1.30.520.1 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_30000107 X. tropicalis
JGI 4.1 e_gw1.30.306.1 X. tropicalis
JGI 4.1 e_gw1.30.520.1 X. tropicalis
ENSEMBL 4.1 ENSXETT00000016998 X. tropicalis
JGI 4.1 estExt_fgenesh1_kg.C_300028 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_300103 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_300104 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_300039 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_300078 X. tropicalis
JGI 4.1 estExt_Genewise1.C_300166 X. tropicalis
JGI 4.1 estExt_Genewise1.C_300306 X. tropicalis
JGI 4.1 estExt_Genewise1.C_300520 X. tropicalis

mRNAs from cDNA libraries (4)

Clone Accession Species Library Anatomy Stage
IMAGE:7551494 BC161303 X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
XM_002932578 X. tropicalis
XM_018253471 X. laevis.L
XM_018255100 X. laevis.S

ESTs (39)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:8932966 EL643673 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
st53k17 DC179886 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7535984 CX477273 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
IMAGE:7551494 CX510913 5' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
TNeu047m22 AL659561 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu047m24 AL659562 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu062d20 AL673662 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu063h01 AL777653 5' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xthr15I13 CN098741 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr27B09 CN105352 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr04D24 CN117932 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr04H12 CN117959 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
xthr03C01 CN119906 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
CABC4475 DR833339 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:7803566 DR838840 5' X. tropicalis NIH_XGC_tropFat1 fat body frog
IMAGE:8942234 EL633833 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
IMAGE:8933596 EL634608 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
xthr45L09 CN116970 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
CABC4475 DR833338 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
xthr04H12 CN117958 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
TNeu062d20 BX684948 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu063h01 BX685515 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
TNeu085n09 BX698854 3' X. tropicalis XGC-neurula whole organism NF stage 13 to NF stage 21
xthr15I13 CN098740 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7535984 CX477272 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
rst53k17 DC149601 3' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:7551494 CX510912 3' X. tropicalis NIH_XGC_tropGas7 whole organism NF stage 10.5 to NF stage 12.5
xthr17G07 CN100039 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7803566 DR838839 3' X. tropicalis NIH_XGC_tropFat1 fat body frog
xlk131a06ex DC045589 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk77g24ex DC060135 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL039e12 BJ037054 5' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
xlk55i11ex DC034230 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
xlk126e15ex DC044041 5' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk55i11ex DC001417 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk131a06ex DC012417 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
rxlk77g24ex DC026674 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5
XL039e12 BJ053551 3' X. laevis.L NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
rxlk126e15ex DC010906 3' X. laevis.L Osada Taira anterior endomesoderm (AEM) pCS105 cDNA library endomesoderm NF stage 12.5