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Summary Expression Phenotypes Gene Literature (1) GO Terms (17) Nucleotides (131) Proteins (53) Interactants (67) Wiki
XB-GENEPAGE-964407

Show:     All X. tropicalis X. laevis

Nucleotide sequences for brf2 - All

RefSeq mRNAs(5)
Models - Gene (29)
Models - mRNA (35)
mRNAs (8)
ESTs (23)

RefSeq mRNAs (5)

Accession Version Protein Name Length Protein Species
NM_001103079 NM_001103079.1 transcription factor IIIB 50 kDa subunit 2383 bp NP_001096549 X. tropicalis
XM_031897566 XM_031897566.1 XP_031753426.1 transcription factor IIIB 50 kDa subunit isoform X1 3326 bp XP_031753426 X. tropicalis
NM_001094270 NM_001094270.1 transcription factor IIIB 50 kDa subunit 2156 bp NP_001087739 X. laevis.S
XM_018253374 XM_018253374.2 transcription factor IIIB 50 kDa subunit-like isoform X1 1817 bp XP_018108863 X. laevis.L
XM_018253375 XM_018253375.2 transcription factor IIIB 50 kDa subunit-like isoform X2 1773 bp XP_018108864 X. laevis.L

Models - Gene (29)

Source Version Model Species
NCBI 10.1 XBXL10_1g15501 X. laevis.S
NCBI 10.1 XBXL10_1g13468 X. laevis.L
NCBI 10.0 XBXT10g005918 X. tropicalis
ENSEMBL 10.0 brf2 X. tropicalis
Xenbase 9.2 gene7383 X. laevis.L
Xenbase 9.2 gene18815 X. laevis.S
JGI 9.1 Xelaev18018499m.g X. laevis.L
JGI 9.1 Xelaev18020389m.g X. laevis.S
Xenbase 9.1 gene3327 X. tropicalis
ENSEMBL 9.1 fam160a2 X. tropicalis
JGI 8.0 Xetrov14012944m.g X. tropicalis
JGI 7.2 Xelaev16047471m.g X. laevis.S
JGI 7.1 Xetro.C00529 X. tropicalis
JGI 6.0 XeXenL6RMv10016114m.g X. laevis.S
JGI 4.1 estExt_Genewise1.C_400160 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_40000023 X. tropicalis
JGI 4.1 e_gw1.40.161.1 X. tropicalis
JGI 4.1 e_gw1.40.194.1 X. tropicalis
JGI 4.1 e_gw1.40.195.1 X. tropicalis
JGI 4.1 gw1.40.161.1 X. tropicalis
JGI 4.1 gw1.40.194.1 X. tropicalis
JGI 4.1 gw1.40.195.1 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_400037 X. tropicalis
JGI 4.1 estExt_Genewise1.C_400191 X. tropicalis
JGI 4.1 estExt_Genewise1.C_400192 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_400055 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_400023 X. tropicalis
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_40000009 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_40000055 X. tropicalis

mRNAs based on gene models(35)

Source Version Model Species
NCBI 10.1 XBmRNA28955 X. laevis.S
NCBI 10.1 XBmRNA25582 X. laevis.L
ENSEMBL 10.0 ENSXETT00000111259 X. tropicalis
ENSEMBL 10.0 ENSXETT00000067133 X. tropicalis
ENSEMBL 10.0 ENSXETT00000095082 X. tropicalis
NCBI 10.0 mRNA029287 X. tropicalis
Xenbase 9.2 rna21535 X. laevis.L
Xenbase 9.2 rna54915 X. laevis.S
ENSEMBL 9.1 ENSXETT00000095082 X. tropicalis
Xenbase 9.1 rna10889 X. tropicalis
JGI 9.1 Xelaev18020389m X. laevis.S
JGI 9.1 Xelaev18018499m X. laevis.L
ENSEMBL 9.1 ENSXETT00000065461 X. tropicalis
ENSEMBL 9.1 ENSXETT00000067133 X. tropicalis
JGI 8.0 Xetrov14012944m X. tropicalis
JGI 7.2 Xelaev16047471m X. laevis.S
JGI 7.1 Xetro.C00529.1 X. tropicalis
JGI 7.1 Xetro.C00529.2 X. tropicalis
JGI 7.1 Xetro.C00529.3 X. tropicalis
JGI 6.0 XeXenL6RMv10016114m X. laevis.S
JGI 4.1 fgenesh1_Sanger_cdna.C_scaffold_40000009 X. tropicalis
JGI 4.1 e_gw1.40.194.1 X. tropicalis
JGI 4.1 e_gw1.40.195.1 X. tropicalis
JGI 4.1 estExt_fgenesh1_pg.C_400055 X. tropicalis
JGI 4.1 estExt_fgenesh1_pm.C_400023 X. tropicalis
JGI 4.1 estExt_FilteredModels1.C_400037 X. tropicalis
JGI 4.1 estExt_Genewise1.C_400160 X. tropicalis
JGI 4.1 estExt_Genewise1.C_400191 X. tropicalis
JGI 4.1 estExt_Genewise1.C_400192 X. tropicalis
JGI 4.1 fgenesh1_pg.C_scaffold_40000055 X. tropicalis
JGI 4.1 fgenesh1_pm.C_scaffold_40000023 X. tropicalis
JGI 4.1 e_gw1.40.161.1 X. tropicalis
JGI 4.1 gw1.40.161.1 X. tropicalis
JGI 4.1 gw1.40.194.1 X. tropicalis
JGI 4.1 gw1.40.195.1 X. tropicalis

mRNAs from cDNA libraries (8)

Clone Accession Species Library Anatomy Stage
IMAGE:7670822 BC136234 X. tropicalis NIH_XGC_tropBrn4 brain frog
TEgg056a14 CR942474 X. tropicalis
NM_001103079 X. tropicalis
XM_031897566 X. tropicalis
IMAGE:6956021 BC081158 X. laevis.S
NM_001094270 X. laevis.S
XM_018253374 X. laevis.L
XM_018253375 X. laevis.L

ESTs (23)

Clone Accession 5'/3' Species Library Anatomy Stage
IMAGE:7670822 CX878462 5' X. tropicalis NIH_XGC_tropBrn4 brain frog
st5p19 DC174708 5' X. tropicalis Xenopus tropicalis embryo gastrula whole organism NF stage 10 to NF stage 12.5
IMAGE:8941923 EL633384 5' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
xthr16L15 CN099750 5' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:8941923 EL633383 3' X. tropicalis NICHD_XGC_tropBone1 bone tissue frog
xthr16L15 CN099749 3' X. tropicalis Xenopus tropicalis xthr plasmid library head NF stage 25 to NF stage 35 and 36
IMAGE:7670822 CX878461 3' X. tropicalis NIH_XGC_tropBrn4 brain frog
PBX0101C10 AW641005 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
XL004p22 BJ030727 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL035j24 BJ042415 5' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:8535842 EB464492 5' X. laevis.S NICHD_XGC_limb_m limb NF stage 54 to NF stage 61
IMAGp998H038352 BX853029 5' X. laevis.S Wellcome CRC pSK St 10 5 whole organism NF stage 10.5
IMAGE:3301112 BE132050 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3301113 BE132061 5' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGp998P098085 BX849156 5' X. laevis.S Soares NXEG egg unfertilized egg stage
IMAGE:6867897 CA981429 5' X. laevis.S Wellcome CRC pSK egg egg unfertilized egg stage
IMAGE:3401339 BE669408 5' X. laevis.S NICHD_XGC_Emb1 whole organism NF stage 10
IMAGE:3421106 BG551909 5' X. laevis.S Wellcome CRC pSK St 10 5 whole organism NF stage 10.5
XL035j24 BJ056373 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
XL004p22 BJ045701 3' X. laevis.S NIBB Mochii normalized Xenopus neurula library whole organism NF stage 15
IMAGE:3421106 BG408164 3' X. laevis.S Wellcome CRC pSK St 10 5 whole organism NF stage 10.5
IMAGE:3301113 BE491042 3' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage
IMAGE:3301112 BE491032 3' X. laevis.S Blackshear/Soares normalized Xenopus egg library egg unfertilized egg stage