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Gene/Clone	Species	Stage	Anatomy Item	Experimenter
hoxb4	xenopus		whole organism [+] anatomical group,cell,embryonic structure,acellular anatomical structure,anatomical region,anatomical space,extraembryonic structure,process,cell condensation,cell part,multicellular anatomical structure

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Expression summary for hoxb4

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Experiment	Species	Images	Stages	Anatomy	Assay
Durston Lab Assay Durston Lab (retired)	laevis	1 image	NF stage 31	somite, spinal cord	in situ hybridization
Harland Lab Assay Harland Lab	tropicalis	1 image	NF stage 35 and 36	head mesenchyme, hindbrain, notochord, pharyngeal arch, spinal cord	in situ hybridization
In der Rieden PM et al. (2009) Assay Paper	laevis	1 image	NF stage 11.5 to NF stage 13	circumblastoporal collar, dorso-lateral marginal zone, ectoderm, involuted dorsal mesoderm, marginal zone, [+] mesoderm, non-involuting marginal zone, paraxial mesoderm, ventral marginal zone, ventro-lateral marginal zone	in situ hybridization
Paper	laevis	1 image	NF stage 11 to NF stage 13	ectoderm, hindbrain, mesoderm, neural plate	in situ hybridization
Paper	laevis	1 image	NF stage 11 to NF stage 13	involuted dorsal mesoderm, mesoderm	in situ hybridization
Hoxc-8 expression shows left-right asymmetry in the posterior lateral plate mesoderm. Paper	laevis	1 image	NF stage 26	notochord, posterior neural tube, somite	in situ hybridization
TALE class homeodomain gene Irx5 is an immediate downstream target for Hoxb4 transcriptional regulation. Paper	xenopus	1 image	NF stage 10.5 to NF stage 21	chordal neural plate, hindbrain, mesoderm, spinal cord	in situ hybridization
The small GTPase Rap1 is an immediate downstream target for Hoxb4 transcriptional regulation. Paper	laevis	1 image	NF stage 12 to NF stage 28	hindbrain, mesenchyme, neural plate, neural tube, pharyngeal arch, [+] posterior neural tube	in situ hybridization
Retinoid signalling is required for information transfer from mesoderm to neuroectoderm during gastrulation. Paper	laevis	1 image	NF stage 13 to NF stage 20	mesoderm, neural tube, neuroectoderm, notochord	in situ hybridization
Retinoid signalling is required for information transfer from mesoderm to neuroectoderm during gastrulation. Paper	laevis	1 image	NF stage 32	paraxial mesoderm, somite	in situ hybridization
XMeis3 is necessary for mesodermal Hox gene expression and function. Paper	laevis	1 image	NF stage 11 to NF stage 13	dorso-lateral marginal zone, involuted dorsal mesoderm, lateral plate mesoderm, marginal zone, paraxial mesoderm, [+] ventral marginal zone, ventro-lateral marginal zone	in situ hybridization
XMeis3 is necessary for mesodermal Hox gene expression and function. Paper	laevis	1 image	NF stage 11	dorso-lateral marginal zone, marginal zone, ventral marginal zone, ventro-lateral marginal zone	in situ hybridization
XMeis3 is necessary for mesodermal Hox gene expression and function. Paper	laevis	1 image	NF stage 10.5 to NF stage 12	lateral plate mesoderm, marginal zone, paraxial mesoderm	in situ hybridization
Expression patterns of Hoxb genes in the Xenopus embryo suggest roles in anteroposterior specification of the hindbrain and i... Paper	laevis	1 image	NF stage 31 to NF stage 32	branchial arch, eye, hyoid arch, optic stalk, otic vesicle, [+] pharyngeal arch, pronephric duct, somite, spinal cord	in situ hybridization
Expression patterns of Hoxb genes in the Xenopus embryo suggest roles in anteroposterior specification of the hindbrain and i... Paper	laevis	1 image	NF stage 17 to NF stage 32	neural tube, somite	in situ hybridization
Expression patterns of Hoxb genes in the Xenopus embryo suggest roles in anteroposterior specification of the hindbrain and i... Paper	laevis	1 image	NF stage 14 to NF stage 25	mesoderm, neural plate, neural tube, somite	in situ hybridization
Wacker SA et al. (2004) Assay Paper	laevis	2 images	NF stage 11 to NF stage 27	branchial arch, circumblastoporal collar, dorso-lateral marginal zone, hindbrain, marginal zone, [+] somite, spinal cord, ventral marginal zone, ventro-lateral marginal zone	in situ hybridization
Hox collinearity - a new perspective. Paper	laevis	1 image	NF stage 11 to NF stage 12.5	circumblastoporal collar, dorso-lateral marginal zone, marginal zone, ventral marginal zone, ventro-lateral marginal zone	in situ hybridization
Interaction between X-Delta-2 and Hox genes regulates segmentation and patterning of the anteroposterior axis. Paper	laevis	1 image	NF stage 21	paraxial mesoderm	in situ hybridization
Interaction between X-Delta-2 and Hox genes regulates segmentation and patterning of the anteroposterior axis. Paper	laevis	1 image	NF stage 11.5 to NF stage 20	involuted dorsal mesoderm, lateral plate mesoderm, mesoderm	in situ hybridization
Interaction between X-Delta-2 and Hox genes regulates segmentation and patterning of the anteroposterior axis. Paper	laevis	1 image	NF stage 20	mesoderm, paraxial mesoderm	in situ hybridization
The initiation of Hox gene expression in Xenopus laevis is controlled by Brachyury and BMP-4. Paper	laevis	1 image	NF stage 11	involuted dorsal mesoderm, mesoderm	in situ hybridization
The initiation of Hox gene expression in Xenopus laevis is controlled by Brachyury and BMP-4. Paper	laevis	1 image	NF stage 11	marginal zone, mesoderm	in situ hybridization
Lhx1 is required for specification of the renal progenitor cell field. Paper	laevis	1 image	NF stage 32	early distal tubule, intersomitic region, otic vesicle	in situ hybridization
FLASH, a component of the FAS-CAPSASE8 apoptotic pathway, is directly regulated by Hoxb4 in the notochord. Paper	laevis	1 image	NF stage 28	neural tube, notochord, paraxial mesoderm, posterior neural tube	in situ hybridization
Patient Lab	laevis	3 images	NF stage 10 to NF stage 37 and 38	brain, dorso-lateral marginal zone, fin, head, mesoderm, [+] somite, spinal cord	in situ hybridization
Patient Lab	laevis	1 image	NF stage 37 and 38	notochord, somite, spinal cord	in situ hybridization
Time space translation: a hox mechanism for vertebrate a-p patterning. Paper	laevis	1 image	NF stage 11.5 to NF stage 12.5	circumblastoporal collar	in situ hybridization
Collinear Hox-Hox interactions are involved in patterning the vertebrate anteroposterior (A-P) axis. Paper	laevis	2 images	NF stage 10.5 to NF stage 28	chordal neural plate, marginal zone, spinal cord	in situ hybridization
XGC-neurula Unigene tropicalis cDNA library	tropicalis		NF stage 13 to NF stage 21	whole organism	cDNA Library
NICHD_XGC_Emb5 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 10 to NF stage 13	whole organism	cDNA Library
NIH_XGC_tropTad5 Unigene tropicalis cDNA library Xenopus IMAGE cDNA Library	tropicalis		NF stage 35 and 36 to NF stage 41	whole organism	cDNA Library
Xenopus tropicalis embryo gastrula Unigene tropicalis cDNA library	tropicalis		NF stage 10 to NF stage 12.5	whole organism	cDNA Library
NIBB Mochii normalized Xenopus neurula library Unigene laevis cDNA library	laevis		NF stage 15	whole organism	cDNA Library
NIBB Mochii normalized Xenopus tailbud library Unigene laevis cDNA library	laevis		NF stage 25	whole organism	cDNA Library
NICHD_XGC_Tad1 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 54 to prometamorphosis stage	whole organism	cDNA Library
NICHD_XGC_Emb10 Unigene laevis cDNA library Xenopus IMAGE cDNA Library	laevis		NF stage 17 to NF stage 19	whole organism	cDNA Library
CCSB_Xt31005E09	tropicalis		adult frog stage	whole organism	cDNA Library

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