XB-CLONE-3061113
Clone Name: IMAGE:7846474
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Gene:
homer3
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Species: Xenopus tropicalis
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Sequence:
Full length sequence: BC121670
[+]
GTTCTCTTCAGTGTCCTTGTTCTTCCGCAGTCTTTCATCCACAAATGTCTTCTACCACTAACAGGGAGCAGCCAATATTTAGCACCCGGGCTCATGTGTT
TCAGATCGACCCAATCACCAAAAAGAACTGGCTTCCTGCCAGTAAACATGCGGTCACAGTATCTTACTTCTATGATGCTACAAGGAATGTGTATCGCATC
ATCAGTGTGGGGGGCACCAAGGCCATCATCAACAGTACTATTACTCCAAACATGACTTTTACCAAAACCTCACAAAAGTTTGGGCAGTGGGCTGACAGTC
GTGCCAATACTGTGTATGGATTGGGCTTCGCTTCAGAGCAGAATTTGTCTCAGTTTGCAGAGAAGTTCCAGGAAGTGAGGGAAGCTGCCCGACTGGCAAG
GGAAAGATCTCAGGACAAGACTGACCTGACAAACCCTGCACTTAATATTACTTCTCAGCAGGTACTTCCTTCTCCTATTATCAGTGCCAATGGACCAGGG
GATGACAAGCTGTTTCGGAGCCAGAGTGCAGAGATGGAACTTAGCACAGAAAGGGAACGTGTTAAGAAGATGCTCTCTGAAGGCTCGGTGTGTGAAGTTC
AGTGGGAAGCCGAGTTCTTCAGCCTCCAGGATAATAACAACAAGTTGGTGGCAGCACTTCGAGAAGCTAATGCCAACGTAGAAAAATGGAAGAAGCAGTT
GGCAGCATATCAGGAGGAGGCGGAAACGCTACGGCAACGGGTAGCTGAGCTTGAATCTCAGACACTGAAAGAGACTAATGAAGAACCAGGAGATGAGCTA
GCTTTAAGACTGAAAGACTTGGAGACCCTTCTCAAAACTAAGGAAGAAGAAATTCTTTTGCTGAAGGAACAGAGGCCTGATCTAATGGAACTGGAGAGCG
AGAGAGACAAGCTGCTTCAGAGGCTGCAGGAGCTGGAAGAGCGAAACCAAGAAATGGAAAAGGAACTTGAGAGGTCAGAACAGAGTCTTAGAGACTCCCA
GTCAGAAAGAGATCGAGTTCGAGAAGAGATAAGCAAAGCTGGAGAAGATCTTGATGTTAAAATATGTCAACTGAATGAGTTGCGTATTGGACTCTCTAAA
CTTCTGGAAAGCAACTGAAAGGGAACAATGGGGCTACACATGGAAATAGTTGATGCTGTTTTTGCTCTTGGAGGAATTCAGACCGGTGATCCAGGAACAG
TAGCTGACATAGGCTAATGAGGATGTTTAGCAGTATTTCCTCAGTTCATTGTATTTACAGGCACATGTCGATCAATGGTATTTTTCTAGCTCAGTTTGCT
CTCTTCATAGCAAAACTTGTTCTCTTCCACTTCAGAGGTCAGCATCCTCACCACCCTTTGTTTTTAACATTATAACTCAGTGCCACATTTTCCTGCCAGG
AGTATAAGCCATTGTAAAAAACCAAAAGAAATATGTGGAGCAGTTATAGCTGGAAGTAGGTAAGGGCTGCTTACAATCACTCTTTACCCACTGTGATGTA
GAGATAAGCCTGTTGTCTCTTTCTGTTTCATAAAGCCGCTTTGATAAAGGTGTATATTACCCATTCAAATCATGCAGCTGTGGAACTGCCTTAATAGATG
GCAGCCGTACTGTTAGCCATTTTAAGTATAGGAACAAAAAGTCATGATGTTAGTCCAGTGTAAATCTAGTTTTAAAATGTTATTTTTCTACATGTCTGAA
TACAGTGGAACTGTGTATTTAATGAAGTGCATCAAAAGACATAGGGCTTTTTAAGGACACAGCCCCTTCAACATAGTTTTATCAGACTAACTATGGCTGG
TTGTTAAATAAAACAAGCTGATAAATAAGGGCTTCTGCTTCTGAACAAAAAAATGGTCAAACCCAAGGCTCACATCAAATAGTAGGGTGTTACTGGCACG
TAAGCTTCTTAATTCATGAATTGTTCATGTCTTTAGCAGTTAACATCTACAACCCCGAAATACATATACAGAACATTTTCTACATTGGCTGCACAACCGA
TTAGCTACACATTGCTGCCATCATCCTGTCCCTAAGCACACTGAAAATGCACATATATACCAATGGGCTGTCAGCTGATCTGTCAAATGATTACGCTTCT
GGTAAACAAACAATCTCAAGGACACCAGCCTTCAGATATCTTAGTAACGGGAGGCAGTGGGAAGCTTTGAGACCACGTTAACATGGTTAGTTGCTTTGAA
GCAAAAGCAAAAAGCCTGCGCCAAAAAAAAAAAGAGTGCAAAAAATGGGACAACATTTGAAACGTTTAAACTGAAGAACAGCTGCCGGCTGTGTGGTCAA
AGAATAACCTTACAACTGTGCCATATTTGTTTACAGTGAGGCCATAGCATCCTATCTGCAGTATAATTATCTTAAGTAGTTAAAAGGTGTCCTCTTGATA
TTACCTAATAAAAACTGTACCGTTAAAAAAGTCACCTTCAGGTCCCATTTGAGGCAACTGTGTCTTAATTTAAAAATTGCCCATGTATTTGCCTAATGGA
AAGATAAAGAGGTGAATATATCCCTAGTTTCTAGTAAGGTGTTACTGCAATTCTTGTCTAAATCTCCACTATCTTAGGCTGACTGACAACAGCCTTCATT
ATCACGTCTAATCAGGGACATTGTCTAGCAGAGCTCGGGGTACATAGGCACGGACACCAACACCTCTACCCAACCTGGTCACTATCTACATTCATCTAGT
CTGCTTGGCATCTTCTGTGCACCAGATTTACCTTCACTCAGCACTCCAACTACAGTACCAACATTTTATTATGTGCCAGATTTTTCTAGGGGCATTTAGT
CTGTTTGCACTGGGGAACAACTCTCAACTTTGCATTTATAGTCTGTATAACACACAGGGGATTCACTTCACAAACCAAGACAGTAAGAGCGTTGTCTGTA
CTGCCTAGTGCTTGACCAAATTCTTATTTTAATCATTTAATCCACATACCAAGTCAGAAAATATTTGTCAGAAGCTGAAGCCAATGTGAGACTAAGGGCC
TTACATTCAGAAAAATCTTTGTCTGATTCTAAACATGACAACTTAATGGTTAGCCTGGAGTTTTTTGAATGGATATTTTTATACCATGCTGGAAAAATGA
CTGCATTTTATCCATGGATTCTAATGGTTTGCACAACCTTGATGCAGTTGAACACTTTCAAGTGAAGGAACCTTGAAGAAAATTTTTAAAAAACTGGAAG
CAGTGTTTGGTCCAAAAAAATCAGTTGTGTATAAACAAGTCAAAATAAAATATTTTGTCTATAACTCAACCTTCCACAAATAGGAAGAGTTATATGTTGG
TAAATCTGCTCCATGTACAATCTGCTATAGAGAATATCTGATGCAATCCAGGAACCCTTTACTATAGAATCTGTTTGGATAAGGTTGCCTAAATCCTTAT
GAAATAATAACTCCTAGGGTAGCTTGGGCAGTGGCAAAGGGGGTTTAGCCTGAATGGCAGTTGGGGTAAATGTTTAGAAGACAGACTGACAGGCCAGCTT
GAAGGTGACTTGGGATGAGATTTGGAGTGAAGGCTTATTTGCTTTCTTAAATATTTTTGGAACTGTTGCCGAATACACTGATATGCTAAGTACACTGTTG
CGAATACACTGATATGTTCCTTTATCTTCCACCTTGTTATGTGCTATGGTGGCTAGACTCTCCAAGGGGAACTTGAACTGGAAGTCCAACAAGTCCAATA
ACATTCCTACACACACTATGCTCAGTTCAGGAGCTCATTAACCTACCTGTAGGCATTTGCAGTGTGGGAGGAAACCAGAGTACCTGTAGGAAAACCCATG
CAGACACAAAAAAAAAAAAAAAAAA
5' EST: DT529830
[+]tctcttcagtgtccttgttcttccgcagtctttcatccacaaatgtcttctaccactaacagggagcagccaatatttagcacccgggctcatgtgtttc
agatcgacccaatcaccaaaaagaactggcttcctgccagtaaacatgcggtcacagtatcttacttctatgatgctacaaggaatgtgtatcgcatcat
cagtgtggggggcaccaaggccatcatcaacagtactattactccaaacatgacttttaccaaaacctcacaaaagtttgggcagtgggctgacagtcgt
gccaatactgtgtatggattgggcttcgcttcagagcagaatttgtctcagtttgcagagaagttccaggaagtgagggaagctgcccgactggcaaggg
aaagatctcaggacaagactgacctgacaaaccctgcacttaatattacttctcagcaggtacttccttctcctattatcagtgccaatggaccagggga
tgacaagctgtttcggagccagagtgcagagatggaacttagcacagaaagggaacgtgttaagaagatgctctctgaaggctcggtgtgtgaagttcag
tgggaagccgagttcttcagcctccaggataataacaaacaagtggtggcagca
3' EST: DT529829
[+]gtgtctgcatgggttttcctacaggtactctggtttcctcccacactgcaaatgcctacaggtaggttaatgagctcctgaactgagcatagtgtgtgta
ggaatgttattggacttgttggacttccagttcaagttccccttggagagtctagccaccatagcacataacaaggtggaagataaaggaacatatcagt
gtattcgcaacagtgtacttagcatatcagtgtattcggcaacagttccaaaaatatttaagaaagcaaataagccttcactccaaatctcatcccaagt
caccttcaagctggcctgtcagtctgtcttctaaacatttaccccaactgccattcaggctaaaccccctttgccactgcccaagctaccctaggagtta
ttatttcataaggatttaggcaaccttatccaaacagattctatagtaaagggttcctggattgcatcagatattctctatagcagattgtacatggagc
agatttaccaacatataactcttcctatttgtggaaggttgagttatagacaaaatattttattttgacttgtttatacacaactgatttttttggacaa
acactgcttccagttttttaaaattttcttcaagttccttcacttgaaagtgttcaactgcat
Library:
Description: Library prepared from 5 ug of poly A+ RNA by oligo-dT priming [5'-ACTAGTGCGGCCGCCTAGGCCTCGAGT(18)-3'] and Stratascript reverse transcriptase. After ligation of EcoRI adapters (5'-AATTCGGCACGAGG-3') followed by kinasing adapters and XhoI digestion, the cDNA was size-selected by chromatography on Sepharose CL-2B columns and fractions containing cDNAs larger than 1 kb were ligated into EcoRI/XhoI digested pCS107 vector. Average insert size is 1.5 kb. The original library contained 1E5 recombinants. Reference: Current Genomics 4, 635-644. Use sp6 to obtain 5' end sequence, and t7 or t3 to obtain 3' end sequence. Library constructed by Bruce Blumberg (University of California, Irvine, Dept of Developmental and Cell Biology).Vector Details | Vector Map |
Name: pCS107
Type: plasmid
5' Restriction Site: EcoRI
3' Restriction Site: XhoI |  |
Usage:
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