XB-CLONE-4358191
Clone Name: IMAGE:7028025
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Gene:
ephb1
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Species: Xenopus tropicalis
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Sequence:
Full length sequence: BC080475
[+]
GAGGGAGATGCTGGAATGAGAACTTGTCCCCCCCCCTCGCATTTCAGCCTTTGCACCTCCAGTGAGCACTTTGCTAGTGTGAGAGTAGGATAACCCTGTG
CCTATGGTGCCTGCAGGCACACACACTGACATGCCTGCCTCCCTGCGCTGCCTCCTGGATGTGCACCTCCAGCCTGGGACCCTAACGATGCTCCGGAGCA
AGGGGACATGGGACCTGCCTGCCAAATAAGGAGCTAATGTTACGCTTTCTCTCTGGGACACCCTGACCAATTGCAACTTGCAACTGGATCTCTTCCCTCT
TTTCATCTTCATTTTTCCCTTCTTGCTTTCGGGGAGCCTGTGAATACTGTTTGCCTTCTGCCATGGAACTAAATGTGCTGCTGCTACTGTTGTTATGCTC
AATTGGGAGCCAAGTTGGAGCTGTGGAAGAGACCCTTATGGACACTCGAACGGCCACTGCTGAACTGGGATGGACAGCCAATCCTTCTTCTGGGTGGGAA
GAAGTGAGTGGCTATGATGAAAACCTCAACACAATCCGTACATACCAAGTGTGCAATGTCTTTGGGCCAAGCCAGAACAACTGGCTCCTCACTACCTTCA
TCCCAAGGCGCGGAGCCCATCGTGTCTATGTGGAGATGCGCTTTACTGTTCGGGACTGTAGCAGCCTCCCAAATGTCCCAGGTTCTTGCAAAGAAACTTT
TAATTTGTACTACTATGAGACAGACTCGAATATTGACAACAAGATATCTACATTTTGGAATGAGTCTCCCTATTTAAAGGTGGACACTATAGCTGCTGAT
GAGAGTTTCTCACAAGTGGACTTTGGTGGGAGACTGATGAAAGTCAACACAGAAGTTCGTAGTTTTGGCCCTCTAACCCGCAGTGGCTTCTATTTGGCAT
TTCAGGATTATGGAGCATGCATGTCACTCCTTTCAGTTCGGGTCTTCTTCAAGAAATGTCCCAGTGTGGTTCAGAATTTTGCAGTCTTCCCTGAAACCAT
GACTGGGGCAGAAAGTACCTCTTTAGTTATAGCCCGGGGAACCTGCATACCTAATGCTGAGGAGGTTGATGTTCCTATCAAACTGTACTGCAATGGGGAT
GGTGAATGGATGGTTCCAATTGGCAAATGCACCTGTAAGGCTGGATATGAGCCAGAAAATCATGTTGTCTGCAAAGACACTTGTGAATAAGGAAAGCTAA
AGAACTCTACGTTTGTTTATCTCACTGCCTCTGTTCCTAATCCTGGGGCACAATGACAACTGGTGCTGTGGACTGCGTCACCGTCAAGAGTCAGAGTCAC
GCGCAAATAAAGGCCCTTTGCCCAAGGAGCTGGGTTATAATTCTGTATATTTCAAATATACCACTAAGCAGAAATTTCTAGTTAAAGTCAGACTAAGGGG
CTGATTTATCAAAATTAAAATTTTTGTTTTGTGATTTTAAACTTTTTGTTCTAAAACTTATGAATTCGAAATAAGGGCTTCCAAAACTTGAATCTTTGAT
ATTTATTAAGTGCAAATAATTAACAAAAAAAACTCGAGAGTGGTCCAAGGCAAAATTTAAGTGGTATTTTCAATGTGAAGTTTTCAAATTTTGAGAGTTT
GAAAATCATTGAAAATGATGAGCAGAATACAAATTCAGTGCTTTAGGCCATGGTCCTTAGCATTTGCTCTGCTTTTCTCCGCCTGTGGTTTTCAGTCAGA
CGGAGAGAAGCGGATTCACTTTTCCACGCATTGTCCTGTAGCTGCATTGACAATCAAACCTTCCACTTGTGTGCAGCTACACAAACAGAGATTGAGCAGA
AAATGCCTGTTGTTGCGTTTTGGGGGCAATCTCCTCACCATGTAGCTGGGGGAATTCACTGACTGACTGCTAGCTCAGCTACATTTCCTTATTATATTGA
TCAGACAAGGTGGACAATCCTGGTTTCAGGATGTGGACCACCAAATTAATCTTGGCCAGGGGTCCCTCATTTATTGTATTAGCATGACTTGGTCCACCAT
GACTTGCGTCTCTGGCAAACAAGTGGAGTTATGTAACGCCAACCATTCTAGAACAAGAAGTCACCCTGCTTCTGTAACTACAGTGCAAATGTTATATCTT
GTGCCACCACTGTGCTTATTTGCTCCTGTTCCATCATAATTTGCTTATATTTCCTATTCATTTGTATCACACACTTTCATAGATAGTATATATGTGGTGT
ATTTACTCTTTTTTGTCTATTTTGGTCTGAATATGAGGTCACTGTGGATGAATTACTGCCTCGTTGCTGTGACACCTTCATCTAAAGCCATTTCCTGGCT
TGAGAATATGCATTTTTTTTTTCAACCTGTGTGCTCTCTGTAATCTGACAACGGTCTCAGCAGGAACCAAATATATGTCATTAATTTCAAAAAAAAAAAA
AAAA
5' EST: CF781089
[+]taattaatcccccccccccccgagggagatgctggaatgagaacttgtccccccccctcgcatttcagcctttgcacctccagtgagcactttgctagtg
tgagagtaggataaccctgtgcctatggtgcctgcaggcacacacactgacatgcctgcctccctgcgctgcctcctggatgtgcacctccagcctggga
ccctaacgatgctccggagcaaggggacatgggacctgcctgccaaataaggagctaatgttacgctttctctctgggacaccctgaccaattgcaactt
gcaactggatctcttccctcttttcatcttcatttttcccttcttgctttcggggagcctgtgaatactgtttgccttctgccatggaactaaatgtgct
gctgctactgttgttatgctcaattgggagccaagttggagctgtggaagagacccttatggacactcgaacggccactgctgaactgggatggacagcc
aatccttcttctgggtgggaagaagtgagtggctatgatgataacctcaaccaatccgtacataccaagtgggccatgtctttgggccaagccaaaacaa
ctggctccttactaccttcatcccaaggcgcggagcccatcgtgtctatgtggagatgcgccttactggttcggaacggtaccatccttcccaatgtccc
caaggttcttggcaagaaaatttttaagtctgacctaatatggaaaccgacttcgcaatttttggccaaccaagtattttttacttttttggagaaagga
aatcctccccctattttaaaggggggaaaccccctcaaccctgcctggaaggaaaagaatttctccgcaaagagaagaaatctttgtggggggaaaca
Library:
Description: 10 ug of polyA+ RNA was isolated from a mixture of embryos at stage 10, 20 and 30 and primed by oligo-dT primer: 5'-GAGAGAGAGAAGGATCC(T)16VN-3' (where V=G,A,C). 5-methyl-dCTP was used instead of dCTP in the first-strand synthesis in order to get hemimethylated cDNA. After full-length enrichment, oligo-dG tailing and normalization against itself, second-strand synthesis was carried out by priming with 5'-GAGAGAGAGACTCGAGTTAATTAAT(C)13-3'. dsDNA was digested with XhoI/BamHI and directionally cloned into the pRKW2 vector. Average insert size is 1.5 kb. Library constructed using the Carninci protocol (Genome Research 2000) by Drs. W. Wu and C. Niehrs (DKFZ, Heidelberg, Germany). Vector Details | Vector Map |
Name: pRKW2
Type: phagemid
5' Restriction Site: XhoI
3' Restriction Site: BamHI |  |
Usage:
Suppliers: