Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
JBrowse2 Tracks
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041591131.1 PREDICTED: Xenopus laevis SRY-box 6 S homeolog (sox6.S), transcript variant X3, mRNA ATGTGTGTGTGTGTCTCTGTATGTGTGTATGTATGTGTCTGTTTGTGTGTGTGTGTCTGTGTGTGTGCAT GTCTGTATGAGTGTGTGTAGGCATGAATCTGCACCAGAAAGTGCACAACTGTAACAGGAATACAGCTGAA GAGAAAAGACGGGATAGGAGTACCCGGCAGATTATGTGAGTGAATGTGCCACTGCCTGCTGGGCCACTCA TTCCTGGGAACACAAAGTGACTGCAGAGTGAAGGTAATTTTAATGAATTCAGAAGCAACTGACCAGTGAA TTGTGGCCGCCAGGACTGGTTTCCTTCAGAATCTTGACTGTGGTTCCTGGCAAATTGGGAAAGGTTCTGA GGGGGTTATGCCATCAACCTCTGAAGTTCTGACCGGCGTGGTAGGAGATCACCTCAACGACGAGTGGAAG GAGGACCACTTCATAAGGATGTCTTCCAAGCAAGCCGCCTCTCCATTCACTTGTAAAGCGGAAGGAGAGG AAGAGATGACTGGGGATTTAGCGTCACGAGAAATAAACGAATGCAAAGATCAGATCATGGCCTCCCACCT GCCCCTGCACCCCCTCAATCACAACAAACCTCACTCCGAGGAGCTACCGTCACTTGTCACTACCCTCCCG GCCGACGTTGACTGGGACAGCATGATCTCTTCCCAACATAGAATGGACTCAGAGAGCAATAAACTCCGTT CCCTGTACTCCTTCCGAACCATGTCTACCTCACCCCACAAGCCTGACGAAGGGGCTCGCGAGCGCAGTGA CCTCATGAGCGGTGTTAACTTTGGGACACCCGAGCGGCGCAAAGGAAGTTTGGCGGATGTGGTGGATACG CTGAAACAGAAAAAACTGGAGGAAATGACACGATCCGAGCAGGAGGATTCTACTTGTGTGGAGAAAATTC TCTCCAAAGACTGGAAAGACAAAATGGATCGGCTGAACACGAGTGAGCTTCTCTGGGAGATTAAAGGCAC ACCGGAGAGTTTAGCGGAGAAAGAGTGTCAGCTTTCCACCATGATCACCCAACTCATTAGCCTCCGAGAG CAACTCCTGGCAGCCCACGATGAACAGAAGAAACTGGCAGTTTCACAGATTGAGAAACAGAGGCAACAAA TGGATCTGGCACGGCAGCAGCAGGAACAGCAGATCGCAAGACAGCAGCAGCAACTCCTGCAGCAGCAGCA CAAGATCAACATCCTGCAGCAACAAATTCAGGTTCAGGGGCACATGCCCCCCCTTATGATCCCGATATTC CCACATGACCAGCGCACGTTGGCGGCGGCAGCAGCTGCACAGCAGGGATTCCTCTTCCCCCCAGGACTTT CCTACAAACCAGGTGATAACTACCCCATGCAGTTCATTCCATCTACAATGGCAGCTGCTGCCGCTTCTGG GCTCAGTCCCTTGCAACTGCAGCAACTGTACGCAGCGCAACTGGCCAGCATGCAAGTGTCTCCCGGTGCC AAAATGCCCACGACCCCACAGCCGACAAACGCCATGGGAGCTCTGTCACCTACGGCCATGAAAAGTGAAA AAAGAGGGACCAGCCCAGTAGCACAAATTAAGGACGAAGCAGCGCAACCTCTGAATTTGTCCGCCCGGCC GAAAACAGCCGACCCCGTCAAATCTCCCACGTCCCCCACCCAAAACTTCTTCCCAGTCAGCAAAACCAGC CCAGTGAGTCTGACCAACAAGAGCAGAATCCCAAGTCCCATAAGGGGAACGTCCCTAGACATCCTTTCTA GTCTTAATTCACCTGCCCTGTTTGGGGACCAGGACACAGTCATGAAAGCTATCCAGGAGGCTCGCAGAAT GAGAGAACAGATTCAGAGAGAGCAGCTGCACACCTCGTATGGACTCGACGGGAAATTGCCCCTAAATAAC ATGGGCTTGAACAACTGCAGAGGAGATAAGGAGAGAACCCACTTTGAAAATCTCGGCCCTCATTTAACTG GGAAACCCAACAAGGAAGGGAAATTGGGGCCTGGAGTCATCGATCTCACAAGACCTGAAGATATCGAGGG AGGCGCCACTGTCGTTGAGGCTCGAGTCTACAGGGACGCAAGGGGTAGAAGTAGCAGTGAACCTCATATC AAGCGACCAATGAATGCTTTCATGGTTTGGGCAAAGGATGAGAGAAGGAAAATTCTCCAAGCTTTCCCGG ACATGCACAACTCCAACATTAGTAAAATTTTAGGCTCTCGTTGGAAATCCATGTCTAACCAGGAGAAGCA ACCATACTATGAAGAACAAGCTCGACTAAGCAAGATTCACCTCGAGAAATACCCCAACTACAAGTACAAA CCTCGGCCGAAACGTACCTGTATTGTTGATGGCAAAAAGCTACGTATTGGAGAGTACAAGCAGTTGATGA GGTCTCGAAGACAGGAGATGAGACAGTTCTTTACTGTTGGGCAACAGCCTCAGATACCAATTAGCACAGC AACTGGGGTTGTGTATCCCGGTGCCATTTCCATGACAACAACAACGCCATCACCTCAGATGACATCAGAT TGCTCCAGCACGTCCGCCAGCCCCGAACCCAGCATCCCTGTCATACAGAGCACATATGGCATGAAGCTGG ACAGTGGGAGCCTTGTTGGCAATGACCTGATGAACGGAGAAGACGAAATAGAAATGTACGATGACTTTGA GGATGATCCCAAATCAGACTATAGCAGTGAAAACGAAGCCAACGAAGCTGTTAGTGCCAACTGAGGAATG TTAACGGACACTCAGCGCAAACAATGAGGGAAAAAAATTTAACTCTGTTGACTTTTTTGGAGTTTTGAAC AAAAGTTCTTAAAAAAGCCTGCATGCATCTGTGGCTTCCCCAGTTCCATCAGCAGAATGGTCTTAAATAT TTCTTGATGTGTGAGACAGTCTGACACACCATAGTTTTTCTCAAACTTGCTTTTTTTTTTTTAAATTTTA AGTGAAGACATAGTAGAAAAAAATCAGACGCCAGGACTTGAAAACTCAAACAAACCCATAACTGTCTTCT AAGTCTTACATTTTTAGTGTGTTTTCCTTTTTTTGAATGCTGGTAGATTGCTAAGTTACTTTTTTTAAGA TGGGGGTTATTCAGTCTCACTCAGGTATGCTGTGTCAGCCAACAGGTTGTGAATGTGTTTTTATGATGAA ATTCATTAGAAGATAGATTTGTACTCATTGTGATACATAACGAAGTGCAGAGCTTCTCCCGTCCAGCCCC ATCGATTGTGTGTTAAAACTTTCAGTATTGTTAAACCTGAGCATCTGACGTCTTAAGGAAAGACTCTAAA AGGCCTGAAAATATTGTGTCGCCTAAGACCACAAAGTGGCCATGCACAAGGAGCAGCAGTTATTAAGTCA TGACGGCTAACACCTCTTTATTTGATTCCAACAGCTAAATCTTTCCCAGGGAACGTTAAAATGAAAAATG TTAAGGATTCTGTAGGAACTATTCATGGTTTCTTGTGGGTTCATGTTGAAATGGGAAATCTTGGGCAAGT CAGCACAACTAACAGATAATGTGTATAATTTGGTAATTAGTTGCCTTCTTTTGTGTTGAAACCCCTTGCA TTCAGTCTTACCCCAATTACCCTTAATTCAATGTTGTTTTGTTGTTCATTCCAGAATGCCAAGGGTCCAG ATGCATGATCCATTTTTAAATCTTTCCTTGCTCCAAAACCTTAACGCATCACTGCCCAATGCCTTACAGG ACTAGCCAACATCAATTGGTTCACTAAAGTTGTAGCGTCAGTGAGCCTATGAGGGAAATCATTTTGTGTT AAATTCCTTCGAATTGGAAAATATTTATTATATATGAATTGTGTCTGTGGGCCTTTAGCCTTCTAGGTGT TTCTAATTTAAAATCCAACTTCATTTAGAACCTCCACAGAAGGGATGGGGATTAGGAATATGGTTGTGAT GTTCTTCATGTCTAGGTTCTGTTTTCACTTTGGGCAACTGCATTACAGAGCAAGCCCTTAGAAACATGTA GCCCCCACAAAGAGGAGCCATTTCATGTCATAATAGATGGTGGAGACTGATTTAGAGTGAGTGCATCAAC CTCTGACACAATTGATGTTTTGCCATGGTGCAGTCTGGGCACCACCATTGGCGTGCATGATGCATGTTTT TTTCAAAAGGTACAAAATGCACCTACTCCTTTCAACAGAAGTCAGCCCACTCATACAGTATGTGTAAGTA AAAGTGTAAATAGAAGTGCCACATCCCCTAACAAAACTTTATAAGAAAAGTCTGAACAGCCAAGACACCT CACCTTGGTGATTTAGCCCCCTGCACAATCAACAGGAGATTGGAACATTGTAGCTGCATAGATTTGAGGC ATTTTGATGTTATGGTTTTAAGGTGTTTTATACCTAACATGGGGAAAAATTGACATGTGTAGAGTATAAT TAGCAAATGTCCTCAGATGGGCAGGACATCCTTTACAAAGCAGGCTGCAGCCTCTAAACAACCCATAGCA TTAGTTTTGTTTTTTTGTCCCAGTCGCGTGTGAAATAAAGCCAAAAAAGGGTTTAGAATGTGCCAAATTT CGGGTTGCAATGTAACAAAGGGTGTGTATAGGGTCATTCCTCTAGAAGAATCGCTTGAGGTTTGCAAAAG TCTTCTTTTGAGAGCATTTACATTTGACCTAGCATTTCATTGCTCTTCTCAGTGTCTCTAATCGTGACCA TATATTATTACTATATTCTTTGGTTTTGTCTCTTGGAAGCTGGGACACGTACAACTTGTGTGATACCAGT CATAAGTTCTGTTAAGGAGGTGTGTGATTAGTGAAAAGCTTTGTCATAACAGCAGTGAACCCCAGATATT TATGTGTGTCCTCATGCCCTTCTTGCATTTGGTAACATGCCAGCTTTGAAGTTATTGCTCCAATATCTGA AATCATGTAGTTCCTAAGGATATTCTATACAAAAAAAAAAACCTTAAAACCTATTTAATTGCATTGGCGA AGATTTCACACATTTTCTTCCTATTTGAGAAATTTGACTGTTGACTGATCTCTGTGCCCAATCAAGGCAA AGTCAGGACTGTAGAGATAAAATAAGTTGGTGAAATGGCCGCCAAGTGATCAGGGTGCAGTTATTCATAC AAAATGTTCAGGTTTGGTACAACGGGGTGTCTTGCACATGTCTTAGGATTTTGGATGAAAACTATTACAT TTGATAGTTCAAGATATCTTTCTTCCCGTATGACATATATTTAATTTTTGCAAAAGAATAGTATTAAGAT TAAGATTTTTACATCCAATTGGATTTTAATTGTATTTAAAATGCAATCTATTTTTTGTATTTTGTTAAGA TATTTTGACACCAGTGTACATTGTTTTATAACTTTTCTGCACAGACAAAGATTTTAATTTGCAGTTCATT TTTTATTTTCCTTCCCTGCGACCATTGGGGAAAGAAAAATATATCACACAGGCTGAAGAAGTACAAAAGG ACTTTTCTTTAATAGTGAAACTTGATTTTGCTTGTACTTCAGAAACACAGGCACCCACAGACGCTGTTTC TCTAAGTGTTATGAGCACTGGATATAAATTGTATTTTTTATCACTTCTGACTAATGTGAAACTGTTGTAC GAAAACTAAATGAACAAAAAGTCATCTGTTTGGGCTTGTGTGGACAAGCCTTGCAGTTGTCAGATCTGAG TCATTTCTTTATGTATTTTTATCTCATTTATTTATGCAAAATTATGTGTTTAAAATCCTTTGTTTGAGCT CCAACCAAGTGCCACCCTTAATCTGTTATGCAACCTTTCTTATTAAATATATATATCAGAAATTGGCTGA TAATTCTGCACACTGTAATGAGAGCCAATGTGATAAATATTAAACAAAGGAAAATATGTTTTCCAAAAAA TTCACATCACGAGTGAAATCTATTTATTAGCCTTCACCGGCTCTAAAATACAAGTATGTAGTGACAATCA AAGGTCTTGCTGTCGACAATTGGAGCTTACAACAAAGTGACGGGCTTACACATCTCATTTGTAGATTTTT TAATTGTGTAAATATAACATAGGAAATAGATTTTATTTTTCATTCATGGATACTTGTTGAAGTATACAGT AACTTATATATTTGCTTATTGCTTCTATAGTAGAATCTATTGGTCCATAGTTGAGAAGAGAAGACACTGA ACCTAATGTAGATGTTTCAAGTATCGCCCCTCCCCATTTGAGAAAACTGCTTTGGAGCTACAATCAGTCC CATGGGGAGTACATTTTTTATTTGGCATGCCAATGTTTCTTTGCATTAGCTGCCAAAAACGTATCTTCCA CCAGTGTTAACGGGATTGCCACAAAGTGTAGTATTTCCTTCATGTCATTGTGACATGAAAATTTGCATCT ACAGGAACAGTAGGGTTAAAAGTATTCAAAAAAGTATTCAAAAATGTTTTCGGTACAATCAACCTGCACA ATCACTGTAATAATCATGTCGGATAGGATCATAATGTATCATTTGTTGTTAAAGGGTCGTCTTAAAGCTT ATAATTTATTTCTGGTTTGCAAAAGTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds