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X. laevis
10.1
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Alignment program
blastn - DNA query to DNA database
blastp - Protein query to protein database
blastx - Translated (6 frames) DNA query to protein database
tblastx - Translated (6 frames) DNA query to translated (6 frames) DNA database
tblastn - Protein query to DNA (6 frames) DNA database
Database
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
FASTA query sequence
>XM_041573059.1 PREDICTED: Xenopus laevis ninein L homeolog (nin.L), transcript variant X6, mRNA CAGCATCCGAGTAGCAGGCGCACAGCTCCACGCTCTGCCGGCTGAGTTCAGTCAGTCATCTCCCCGTGTT TGCCTGTGGGGGGAGCGCGTGCGCCTTTTCTCCGGGTTCCATGTCTTTCTCACGCCGACAGACGTAAGGT CTCTCCTCCTCCTTCTCCTCCTCCTGCTCTCTCCGACCATTCAAACTGCTCAGCTAGAGATCGAAGGAAC AGGGTAACCGGGCTGCGGAAACCGGGGGACCAGTAGCTTATCAACTGCACCATCTGCTTCCCATTCCCCC GGACTCCTCATCGAGTTGCACCGGACAGCTTTCCGCGCACACAGACACGTCCCCGGGATGGAGTGAGAGC GGATCTTCGGACACAGGAACAAGAGGGGAAACTGTGGTAGACTATGGGATGGACGAAGCTGAGCAGGACC AGTATGAGGCCAGACTCAAGGAATTGTTTGACAGCTTTGACGCCACTGGTACAGGATCTCTGGATCAAGA AGAGCTGACTGATCTCTGTCATATGCTCCAGCTTGGGGAAGTGGCACCCTCCCTACAGCATGCCCTTCTG CAGGACAATCCTCTAGGCAGAGTTCATTTCGACCAATTTAAAGAAGCTCTTATTCTTGTACTCTCCAACA GTCTGTCAAATGAAGATGCCTTCCAGGAACCAGTGTCATCTACTGAGGTCCAGCCCAAATACATTAAAGA TGGAAAGCGGTATGGCAGGAGGTCTGTGCCTGAACTTCAGGATTCTCTTGAGTTTGATGAAGAGACAGTG ATTGAACCTGAAGATGAAGGTACCAGGTCTTCACATGTCGGCTCCAGAAACTGTGAAGAGATGTGGAAAA GTGAAGAGGGAGACGAATATGAAGCCGAAGGCCAGTTAAGATTTTGGAACCCTGATGACCTCAGTGCTTC TCAGAATGTGTGCACTACAGATCAAGAATGGTTGGAACAGAAGTTGCAGTTGGTCTGCGACGACCTTGGC ATCACGCGAAACGATCACTTAAACGGGAAAAAGCTCATCTCAATATGTGAACAGTATGGTTTGAAGAACT TGGACGAAGAGACCCTGGAAGATATGATTCAGAATCTAGATCAAGAAGAAACAATGAGCCTCCAGGATTT TTTCTATGAAGTCTGTAAAAATAGCAAACCTTTAACACCATCATCCTCAACTCCCTACCGACACCTAAAG AGGCACCTCTCTATGCCGTCTTATGATGAGTGTGGAAGACGAACAATAACTCCATCGTCCATGGTAGGGG CTGTTGGCTTCCGCTTACTATCTAAGCTTGATGATGGAACAGGCTACGGTTCAGTGGAAGACGTCATAGA TCTTTGGCAGGAAGAAGGAATAGAAAACAGCCAAGCAATACTTAAGGCCCTGGATTTCAATCTAGAAGGT AAAATTAACCTGGTGGATCTTACAATGATCCTGGAAAATGAGCTTTTGATGACCAAAAATGAGGTGTATC AGGCTGCGCTGGTCAGCTTCCGTTCAGAGATCAGGCACTTATTGGAACGAGCTGATCAAGCTGCCAGAGA GAAAGAAAAGCTCCGCTCTGATCTGGAGAAAAATGAAAAATTGAAAAGCCAGATGGCTTCAGAAGTGGAT GATCATCATGCAGAAATTGAACGGCAAAATGAATACAATCTTAGGAAACTGGATGAGGAATACAAGGAAA AAACAGCAACCTTAAAAAATGAACTGCGGAATGAGAGAGACCAAATTTTACAGCAGACCACAAAACAGCG TCTTGAACTGGAACAAGAACTTGATAAGGCAAAGGCAGAAGAGAACTATCTCAGAGACAGACTCAATTTG TGCTTAAAGGAAAACTGTCGTTTGGAGACTGAATTGTTGCAAACCTCTGAAAAGCTGGTTGAATATGAAA CCCTGGCATGCAAACTGCAGAGAAGCCTGGATAATATCATGCGGGAAAAGTTTGGTGACATGGATCCCAC ATGTATGGAGTTCCTTAGTCAAGAGGAGAGGTTAGCACAAATGAGAAATGAGTATGAGCTCCAACGAAGG GAGCTGCAGGACCGCATTGATGAACTTCAGCTGGAACTTGAAGACTACCGCACACAAGGTCTTAGAGGAT CCAGGAGATCACTTAAAAATTCCTTGTTTGATGAAATGGACAATAAAAATGCTACTGAAACTGATCAGGG TATTGGGCCAGAAGATTGTCCCCCGTTAAACATGAGCATAGAGGCAGAGATGGCCATTGAACAGATGAGA GAGCAGCATAACCGGGAAGTGGAAATTCTGACAAATGAACTTCAATGCAAAACAACTCATTGTGAAGAAC AACTGAAAGAAATGAAATCTTTATTTGAGAAAGAGAAAGCTATTCTCAAGGAGCAGTTCGAAGAAGAGAT TCAAAAAGCAGAGGTGCAGTTACAATTCCTACAAATGCAGCATGCAGAACTGGAAGCTGACATTTTGAAA CTGAAGGAGGAACAGTATAAGACAGAATGTGAACACCAGAGGGAGATAAGCAACAGAGAAGCCTTGTTTC ATGAGCAAAAGAGTCTCCTGGAAGAAAAGGAGGCTGCCTTACAGAAGCAGCTAACAGAATCTAAACAGAC TTTCTTAAAGGAGAAAGAAGAGTTTGCACAAAAAGCAGAGAAGGCCGAAAAGAAGACGGAGACCAAATTA CTTGCACTGACAGGAAAGTTTGAAGAGGAGAAAAAACAGTTAGAGCAAAGTTTCCAGGAGCAACTTGACA GTCTAACAGTTAAACAAGAGGTTCACTTACAGAATCAGCTAACTCAAGCTAAACAGACTTTGCTTTTAGA GAAAGAGGAGTTTGCACAGAAAGTAGAAAAGGAGGCCAATACCAAAGTAGTTGCACTAACAAGAATGTCT GAAGAGGAGAAAAAGCAGCTTGAGCAGTATTTCCAGGAGCAAATTGCAAATCTAACAGTAAAACAGGAGT CTGTCTTACAGAATCAGCTTGCTCAAGCGAAACACTCTTTGCTTTTGGAGAAAGAGGAGTTTGCCCAGAA AGTAGAAAAGGAGACTGAGGCCAGAGTGGCTGCACTAACAAAAAAGTGTGAAGAGCAGAAAATTCAGCTG GAGCAGAGTTTCCAGGAAGAAATTGCAAGTATAACAGAAAGACAGCAGTCTGAAAAAGAAGACAGGACAA AAGTTTTAGAAACCCATCATCTCGAACTCCAGAAAGAAAGATCTGAGAACAAAAAACTTAAAGAAGAAAA TGTTGCATTAAAATCTGAAATAAGCACTTTAGAAGATGAAGGTGAACTGAATAATCAGAAAATAAAGGAT GTCCAGGATGCATGCGAGGAAATGTGGGTGAACCTAGAGACTGTGCAGAATGAGAAGAGTGCACTTCAGA AGGTGGCAGAAAGTCTGTCTAAACAGCTGTCTGAAGTGAAAACTAGAAACCAGCACCTTGATTCTGAAAA CGCAGAACTGAGCTTAAAGAATGCAAAAAATCAAGCAGATCTTCAGGATCTAAACCGTAGGCTAGTGGCT TTCCTGAAGCAGAAGGATAAGAAAGATCTTACCAAGGGCTTGGAGGAATGGCAGAGAGACAGGAGTCTGA TAAACGATGAACTGGAAAGTTACAGAGCAAAGGTTGGAGATATAGAAAAAGAACTGGCTAACCTCAAACG TCACAATCGGTTTTTAGAACAAGAGAACACACTACTGAAACAGGAAATTGAAACTAAGCAGCTCTCTAAA TGCTCTGAATTCACTGACCTCAAGAATGAGATCTCTGGCTTACTAAATAAAAATGAAATGATGCTTAAAG AAAAAGAAGCGTTGGGGGAGGAGCTTAACAGATGTGCGGAAAAGTGTGCTAAAGTTACCCATCTCGAAAG CAAGATTGCAGACTTGAAGCACGAACAGAAGTCTTGGGAACAGCAAACTCACACACTAAAATCCCAGCTC TCACTCTCCTTGGAAAAGATCCAGAGCCTGGAGGAGAGCCTGCAAAGTGTAAATCTCCAGATATCACGGA TCAAGTCAGATCTGCGTGTCGCACAACAGGAAAAAGAATCCCTAAAACAGGAAGTGATGTCACTACACAA GCAACTGCAAACCTCCAATGCAAAGAACCAGGTCCTTGAAATGACTTTGCAGTCCTCTGGGTTACAAAGT CAACAGAAGAAAATGTACTGGGATGATCTGGAAAAATTGATGGAACAGGAACAGAAGCTTCTACGACAGG AGAACGAGAGACTCCTTAAAGAGGTTCAGAATGCAAAGTCTGACCTGGCCCAGTGCAGGGAAAAGGTACG GCAGCTGGAATCTGCTCTTATTTCTGTGAAACAGCAGAAGCACCAGAATCAGTCAAGCATGGTAAAGGTT TTAGAACAGGAAAAGTCCAGCTTAAAACGAGAATGTGATCACCTTCAGAAAGAGCTGGCCTCTGCTAATA GGAAGATTAGCCACTTGAGCTCTCTGGAACGGGATTTGGATGCCGTTAAGACAGAAAATGATGGTTCAAG AACAAAGCATGGGAAATTTGATGAGCAGTTAATGGATATGCTGCACTCAGCTCCCAGTGCGACGTTTAGC CTTTCCCAGCAGCAAAACTGTGCCACCGTCCCAAGGGAGCAGTACCTACATCTCCAGCAGGCAGATAGAA GAAGCCAGCAACTCCAGGCAGCAATGGAAATTAGGAACTCCAACACCAACTCTCCACAGAGTGCTCAGGA CCAGCTTTTGAAGAAAATGGAAGCACGCATGATGGATGTTGAAGAAAAGCTTAGGTTTGTGAAAATGCTT CTGCAAGACAAAGTGAATCAACTGAGGGACCAACACACAAAGAATACTAGAGCCGATGAGGTCATTAAAG ATTTGTATGTGGAAAATGCTCAGCTGCTGAAAGCTTTGGAGATGAGTGAGCAGAGGCATCAGACTTCTGA AAAGAAGAATTATTTGCTGGAAGAAAAGATCTCTGGGCTTAATAAAATTGTGAGAGATTTGGCTCCGCCC CCACTTAGTACCGTGCATACTCCCCAACGGCGCTGCTAACTAAATCCACCACTGCCCTATATATTTGTAA TGAAAATGGAATATTTATATGTGATATCCCTTTCAATAACAAGTGTTTTCACTGCCATAGGAGCTGCTGA GACTTGCCACACCAATTTAAACTGCCTAAAATTGCTCAGGACCATGTAGCATACTGTATCTTTCTGGTAT TCCAGTCCATTCTCTGCCTTCCTCCTGTTTTGCCACTGCCAAAGTCTTTCTTCTCATTGCATCAGAATCT GATTTATAGTCCTTATTTACCATTAGACCATACCAATATCAATTACTGTGCCTTGAGTATCAAACATTGT TGAAACAGCCATTCAGAAATATCATGGAGTTATTTATCATGGAGTTTAGTATTTATGTATTTAAAAATGG ACAGCACTGTGTAAACACATAGCACAATATAAAGTGAGATATACATACATAGATGATACTCTGGGGCAGA TTTATGGGTTTTTTTTTTACAGAGCAGGCATTTCATAACAATTGTTATAATCCTTAAAGGGGAACCTCGC CAAAACATAACTTAAGCTTTTTGAAAGGTAAACATAATTTC
Load query from file:
Options
E value
0.1 (Default)
10
1
0.001
1e-5
1e-25
1e-50
1e-100
Number of alignments
25
1
5
50
100
Word size
Default
2
3
4
5
6
7
8
9
10
11
12
13
14
15
Default = 11 for blastn, 3 for all others.
Matrix
BLOSUM62 (Default)
BLOSUM45
BLOSUM80
PAM30
PAM70
Gapped alignment
True
False
Automatically set to False for sequences longer than 4500 bytes
Filtering
On
Off
BLAST time is limited to 30 seconds
