Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041575311.1 PREDICTED: Xenopus laevis BCL11B, BAF complex component S homeolog (bcl11b.S), transcript variant X4, mRNA CTGGTGCAGATTAAACGTCACGTCCGTACTTGAACTTGAATTTTATCCCATTGTACAGAGGCAGACCTAG CCACAGAGAGACAGAGAGCTCCCAGAGAACCAGGACTCCGCCATCTTCACATTACAATTAAATAGTAATA GCCAACAGCACAGCCCTGGCTCAGCAAGTCGTCCCAGTGGCAAGTGGAGCAGCGCAAAGTGCTGGGCGCT ACATTCCAGGGCAGAGCCAGTGTAACTGCAAGGAGACTCTCTCTGACAGTCCCCCCTAAAGCAGCCGGGT CAAGCCTCCCTTTTTGGCATTATTTGGGCAATCGTAGTTTTTTTTTTTTTCCTTTTTAAATTATTACCAT TTCTGTTTGGTTCCTGATTTTGCGCATTGATGGAAGAAGTGCCGCGCGCTGTGGACATAGGACGAGTGGA CACGAGATCAGCCAATTCCTAATAAGTTGAAGATTGGAAGTGGAGAAACTAGTGCCCTCCTTGTTTGATT TCTTGCTGAAAGGAGGACGCTTATTGCCTTTCCTTGTCTTGCACAAGACACAAGAAGAAGAAGAGAATAA GAGAGAGGAGGAGAGGAGAAGAAGGAAACGTGGGGGTGGAAGGAGAGCAGGTCGCCTTTACGCACAACCG ATCTCCGGGCGATGCCAGTTTAAATGCCAGGGCAATGTCCCGTCGCAAGCAGGGAAACCCGCAGCACTTG TTACAAAGGGACGTTATCGCACGTAAAGATGAGCCTTCAAGCTATATTTGCACAACATGCAAGCAGCCTT TCAACAGTGCATGGTTCCTGCTTCAGCATGCTCAAAATACACATGGATTTCGTATCTACCTGGAAACAAG CCCATCTAGTAACTCTCTTACTCCACGTATCACCATTCCTCCACCTCTGGGACCGGAGACTGTTGTACCA TCCCCTCTGATGAACTTCCTTGGGGACAATAATCCCTTCAACCTTTTAAGAATGACAGGGCCTATTCTAC GTGATCACCCAGGCTTTGGTGAGGCTCGACTCCCAAACACGCCACCACTTTTTAGCCCACCCCCACGCCA TCATCTGGACCCGCATCGCCTTAGTGCCGAAGAAATGGGGTTAGTTGCCCAGCATCCTAGTGCCTTTGAC AGAGTTATGCGTTTAAACCCCATGACAATTGAATCTCCAGCAATGGATTTTTCCCGAAGGCTAAGAGAAC TAGCAGGGAACAACTCCACTCCTCCAGTGTCACCGAACCGCGGCAATCCTATGCATCGCCTGTTAAACCC TTACCAGTCAAGCCCTAAGTCACCTTTTATTAGTACACCACCATTGCCACCCATGCCCCCTAGCAGTACT ACTCCACCACAAACCCAGACAAAGAGTAAATCCTGTGAATTTTGTGGGAAAACTTTCAAGTTCCAGAGTA ATTTAATTGTTCACCGACGCAGTCACACGGGAGAAAAACCTTATAAGTGTAAGCTGTGTGATCATGCATG TTCCCAAGCAAGCAAGTTAAAACGTCACATGAAAACGCATATGCACAAAGCTGGTTCAATGACTGGAAGG TCTGATGATGGACTGTCTGCTACTAGCTCACCAGAGCCAGGCACAAGTGAGCTAACAGGAGAGGGTGTGA AATCCAATGAGACAGATTTTAGAAATGAGAGTGACCCATCTTTATGCCATGAAAATGAAGAAGAAGAGGA AGAAGAAGAAGAAGAGGAGGAGGAGGAGGAAATAGAGAATGAAAGTAGGCCAGAGTCAAGGTTCAGTATG GACTCTGAAATGAGCCGCAATCGTGAAAATGGAGCAAAGCCAATCCATGATGAGAAGTCCCTTGTTCTTG GAAAAGTTATGGATAATGTAAATTTAGCAAGCATGCAGGCATATAATGATATGCTACATGAAAAACATAA GAGAAGTCATTTCATGAAACGATCTTCTGATCCGCGAGATTTATGTCAGAGAATTCCAGTGCATGAAGAT ACAGTGGAAAGAGAAATGATCCCTAATGATGAAGGGACAGTCAATGGAAATTTTGGACCAGGTGAACCAT TTCCAGTCTTGCTCCCACGAAAACCGATGCCCATTACTAGTTCTGGACTAAACAACTCATCAAAAAGGAT AAAAATTGAGAAAGATCTAGATTTACCCCCAACATCAATAATCCCTTCAGAAAATGTTTACTCCCAGTGG CTAGTAGGATATGCAGCATCAAGGCACTTCATGAAGGATCCATTTCTAGGATTCACAGACTCTCGACAAT CTCCTTTTGCAACCTCTTCTGAGCACTCTTCAGAAAATGGAAGTCTGCGGTTCTCAACACCACCAGGTGA CATGCTGGATGGAGGTTTCTCAGGGAGAAGTGGGACAGCGAGTGGTGGCAGCACACCTCATATCAGTGGA CCAGGGCCTGGCCGACCAAGTTCAAAAGAAGGAAGAAGAAGTGACACATGCGAATACTGTGGCAAAGTGT TTAAGAACTGCAGCAACCTCACGGTCCACCGCAGAAGCCACACTGGGGAACGGCCTTACAAATGCGAGCT CTGCAACTATGCATGTGCCCAAAGCAGCAAGCTGACACGCCACATGAAAACGCATGGCCAGATAGGTAAG GAGGTCTACCGCTGTGACATTTGCCAGATGCCCTTCAGTGTTTACAGCACCCTGGAGAAACACATGAAAA AATGGCATGGAGAACACTTGCTGACAAATGACGTCAAAATTGAGCAGGCAGAAAGAAGCTAAGGCCCCCT ATATGGGTTTAATCAGGGGTCTGGGTATCCATTAAATTTGTACAGATTTAACTATTGCCAACTGAGAAAA GCTGACCTAACTTGCCTCCTTAAAATAGCATAAATATGTTAAGTGTCACAAATGTGACACTTAAAATATA ACCTGTGTCTAAATTTCTATTAAATCTGAGGGTTGTATAAGGCAGTAAAACTTGTGGAGCCTTTTAACTG TGCAATAATTTCTGTATTTATTGGGGTTTTATTTGTAATTTTGGCATGTGCAGGCATTTCTTTTTTCCCC TTGCTGTTTAAATTTCTTCTTTTACCCTTGTTCTAATGTGCTAAACTCTCTTTTTGGGCTTCAGGGGCTA CCAACCTGTCCAATTACTGCGCTGCCATACCCCTCCAGAACTAAAGGGATTTATTATCTATTCCTTAACC CAATAGTAGCCTGAGATCCTTATCCTTGTAGGGAAGAGACATATCTTAAATTATCATTTTGTGGGCTGCT ACAATTCCTGAAATTTAAGCTAAACTTTTGTAATTTCTTGCAAAGAAGCCATCAGCTGTTTGATTTAAAT TATTTGAAATGTTATTTTACCTATGCTAAAATAGAGGAATTCTCAGCGGATTACAATCTTCGAAATATTA GCACTTAATTATATGGCGTGATAGGATCTTGTATACAGCAAATACAATTTAACTTGCAATGCCTCAATTT TGCTTTTCTTGAGGATTAAAAAGCCACAGTCTCTAAGAATATGCAACATTTAGCAATGACACAAAATGTC TTTGTATCTCAAAATGTCTTTCCTATAATTATTTCATAGTAGAATTAGTGCTGCACAGGTAGTATAAAAA ATATACATTTAGTAGAGTAAAGATACAGCCTGACGATGTCAACTTAACCCCTTTTTACTGCCAGGGTTAC TTGAATTTCATTGTTGAACAATGGATTTCTGGTTACGCTTGCAGAGAAAAATGTTAAGTACTGTGGACCA TTTTTAACATAGGATGCACCTACAGTTGTTTGCAGATGAATAATGTTGAAAACTGTTATTTATTCTAAAT AATGCAAGTTAAAATGATGACACCTGCTTTTAAGATCCTTTTTCCATTTTTCTTTTCTTTTTCTTTGCGT GCACCAGGAGGACAGCAGAGAAGAAAAGGTTACCCATTTTAATTATGTCGACCGCACTTTATAATTTTTT TTTTTTTTTTTTTTTTCTCATTTAAATGGCTTCTAAACAAGAAATTACAGCATATTCTCCTACTCAACCC ATTGGTGGGTGACCTCTATAAGGGAACATCTGAGATTAAGTGTCAGTGTTGCTAAGCATGGCATTCACAA TGCTGGCACTATAAAAAGATATATATAAAAATATATATAATTTATTGGACGGTTTGTCTACTGCCATTCA ATTTGTTGTGAGTGCCTTGAAAACTGATCTTCCTATCTGAGTCTCTCGAGACAAAATGCAAAACATTTTT GTGAAACATAAAAAAGACTTTCTAAAAATAGTAATACAAGAAAAGTACATTTCTTTAAAAAACAAAAACA AAAAACAAAAAAACAAAAAGCCACATTTACTTATAAAATTCCTGTTTGAAGATAGTGGACACATTATTGC CATAAGACCCAATCTAATGAAGATGTTTACCCAGCACAACTTTGAACGTTCTCTGGCTGATTTATTGTCA GCTTTTTTCTTTTCAGGACAACGCTGCTTAGAAAACGGAATGAAAATTATTTACTGCTGAATTGAAAAAT GAAATGACACAACTTACCAGTTATCGTTGAATGGAAAAAAAAAAAACAATTCAGGAACAATGGCTAATTT TTTTTTATTGTTAAATTTAGTGCACTCTGTCTTAAAATAAGTTTACAGTATTCAATACGTACAAGGGTAA AAAAATATAATTGTGTGTATGTGTGTTTGGACGAACTTTTCTTTTCAAAGTTTGCTTAATAGGTTATAAA ATGCCATAATGGCCATGTGTATATTGTTTTTCTTTTGGTGACGGGGGTTTTAGTATATATGATATATATT AAAATTTCTTGATTACTGTAAAAGTGGACAAGTATTTGTAATAATTCAGAATGCCTGGGCATTTTACAAA ACCAGAAAAAAAAAAAATCCTTGAAAATGTTGCAGTAAAATTTAAATGGTGGGTCTATAAATTTGTTCTT GTCACTGTAATTGTAAAGTCTAAGTTTTAGTATTTTTTTTTTTTTCTGCTTTGGGTGTTGAATTTATTTT ATTTTTTTGACATGTATAGAAACTTGTATTTGGGGATTAAAAAGGTGATTGCTACACCATGTAGAAAAAG TAAGTAGAAAAAAAAGTGCTTAATATTGTTATTGCTTTGCAGAAAAAAAAAAACACATTTCTGACCTGTG CTTATTTACTTTCCTCTTCCCCCTCTGGAATGGATATTGATATTGATTGGTTCACATAATGTAGGCACTT GCTGTATTTTTACTGGAGCTTGTAATTTTTTAACTGTACGCTTGTCCTTTTAAAAGGATTAATTGTACCT TTTTGCTAGTGAATTTGAAAAAAAAAAAGGAATTGTGCTGCCATAATATATTTTTTGAATTTGGCAGGAT AAAATATTGCAAAAAAAAAAGGGAAGAAAAACAGAAAACCAATCATTTGTAATTTAAGTCCTACTGTACA GAAAAAAGGAGGTTGTTTAACAACATCCAGGTTAATGAAACAAAACAGATTTCTTAAATGTTTTGTTCAC TGGTAATTTAAGTTGTACATTTTCTGTCATTATTGGCCTATAAAATAAAGTACTGTTCGTACAGGGATGT AACACCCCACCCCTTGGGTGCCTGGACCTTGTATCAAGGCCTTAGCAGGTATGGACTGATTGGTACTAGT TACACTTGTAAAATAATATCAGTTTTTGTATAAATACTATGAGAACATTCCATGTATGCTCGTGAATATT CCAGGAACCTCTTATAGAGTGAGAAATTCTCCGCAGTCCCACCGGTATCTGTTGAACCCACTGTACAAAA CAAAAAGTGATTTTTTTTTCTGTTGATACAGATGCAATTGTGTTCATAAATTCAGTGGTCCAGGCCCGGT CATCCCATCCCTTGTTAGAACAGGACCTATTCTGAACACAGGTCTTGCCAGTTCATATCATATCGGCTTT GCTCTCCATTCCTTTTTGTACATTCCATAAAATGCTGAATGTGTGATGGGCTGAGATGAAATGTTGTATA AATGCAAACACAAAGTGGCTCCAACTGCATATCTATCGTTTTCTAGTGCATTATGGGAATTCTGAACTTC ATGCCTTCTTCCTATTATTATTATTATGATGAGGATGACAGCTTGTCCTAAAGACAGTGCTTTGCATCTT CAGGCATCTCTGTGGCCAATTCTAATTTTGATTATATGCCATAAATGTTTGTTTGAAGTAAATATCACCA GCAGATCTGGGTAACCTCTTTTTTTTCGCCAATACGGTTTGCAATTAAGTGAAGCCCTGCAGCACTCTAG AGGTTAATGATATGCATCTTATTAGCTATTCACAGAACAAGATAAATAAGCACAATGTAATGTTTTGGCT GTGCACAGAATGAAAAAAGTCTACTCTTTAAAACATTGACCACAAGCACAATATGTAAGCTGCTCTTTAT TTTATGTCCACCCTTCCCTACACTCTGGTTCTCTGTGGTCATCAGTATTTCATCCCAGTCCATTATAAAA GACAGTCCATGACATTGTTCATTGCAGCAGCCTCATCATTATGGTGCTCTATGTATTTTAGAACTGCAAA GCAAAATGTCACTTAATTTGTTTGCATTTGTATGGCAAGGCAAAATATTTTTTATTACCTTTTTCTATTA TTGTATGAGCTTTTGTTGTTTACTTGGAGGTTTTTGTCTTTTACTACAAGTTTGGAACTATTTATTATTG CTTGGTATTTGTGCTCTGTTTAAAAAACAAGGGCACTTTTTTAATTATGGATAAAATGTTGGGACGGCTA GAGGTCATTTCAACATGGCTTAGTGAAATATTTATTGTTTTTCTTATTTTCTCTGTACAAGATTATGGCC TCTTCATTTTATCTTATTGTCACAATGTTGAGTTCAGCATGTGTCTGCCATTTCATTTGTTCGCTCGTTT AAAACAAGGCTTGTTCCAGTTTTCAAGTTATTACAAAAAGAAAACGAAAAAAAAAAAAAAAGATAATAAA TTGGACATTTAACTTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
