Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041570395.1 PREDICTED: Xenopus laevis beta-transducin repeat containing E3 ubiquitin protein ligase S homeolog (btrc.S), transcript variant X1, mRNA TGCGGGCCGCCGTAGCGTTCTTCGTTAAGGGAACCATGTGACTATGATGTCATCGGATGAGGAAGTACCT CGGAATAAGGGTGTACTGGGGGTGATGGCATCTTATAAAAAGTGCCCAGTGCCCAAATCTCTGTGGCTGG GCTGCTCCAGCCTGGTGGACAGCATGCCCTCCCTGCAGTGCCTGTATAACCCAGGGACTGGCGCACTTAC AACTTTCCAGACGGCCTCAGAGAGAGAAGACTGTAACAGGGATGAACCGCCTAGGAAGATTATAACCGAG AAAAACACACTTAGACAGACATCCAACAGCTGTGCCAGTCTGTGCATAACCCAAGATACCGTATGCTTGT CTGGCTCTACTATGAAGACAGAAAGTTGTGTAGTTAAAACAAAACTTGCCAATGGCACTTCCAGCATGAT TGTGCCCAAGCAGCGAAAACTGTCAGCAAATTACGAGAAGGAAAAAGAGCTATGCGTCAAGTATTTTGAG CAGTGGTCCGAGTGCGATCAAGTAGAGTTTGTTGAACACCTGATATCTCGAATGTGCCACTATCAGCATG GACATATAAACACTTACCTTAAGCCAATGTTACAAAGGGATTTCATTACCGCACTACCAGCTCGCGGACT CGATCACATAGCAGAAAATATACTTTCATACCTGGATGCAAAGTCATTGTGTTCTGCAGAACTGGTATGT AAGGAGTGGTATCGAGTGACCTCAGATGGCATGCTCTGGAAAAAGCTCATAGAGCGGATGGTCCGGACAG ATTCTCTTTGGAGAGGACTGGCAGAAAGAAGAGGATGGGGGCAATATTTGTTTAAAAACAAACCTCCAGA TGGGAAAACGCCACCAAATTCATTCTACAGAGCGCTTTACCCAAAAATTATTCAAGACATAGAGACAATC GAGTCCAACTGGCGCTGTGGGAGACACAGCTTACAAAGAATTCACTGCCGGAGTGAAACAAGCAAAGGAG TATACTGTCTGCAGTACGATGATCAGAAGATAGTAAGTGGACTCAGAGATAACACCATTAAGATCTGGGA TAAGAATACTTTGGAGTGCAAGCGAGTGCTGATGGGTCACACTGGGTCAGTTCTCTGTCTGCAATATGAT GAGAGAGTAATCATTACTGGCTCTTCAGACTCTACCGTCCGGGTGTGGGACGTGAACACAGGAGAAATGT TGAACACGCTGATTCACCACTGTGAGGCTGTGCTGCACTTGAGGTTTAATAATGGCATGATGGTCACCTG CTCCAAAGATCGTTCCATTGCAGTTTGGGACATGGCCTCTGCGACCGATATCACATTACGAAGAGTTCTG GTAGGCCACCGAGCTGCCGTAAATGTGGTGGACTTTGATGACAAGTATATAGTCTCTGCATCTGGTGATC GAACAATAAAGGTTTGGAACACCAGTACATGTGAATTTGTGCGGACATTGAACGGCCACAAGCGTGGTAT TGCATGCTTACAGTATCGAGATCGGCTTGTGGTGAGTGGTTCTTCTGACAACACAATCAGATTGTGGGAT ATTGAATGCGGTGCATGTTTGCGGGTTCTGGAAGGACATGAAGAACTGGTCCGGTGCATCCGCTTTGATA ACAAGAGAATAGTCAGTGGAGCGTATGACGGGAAAATTAAAGTGTGGGACCTTGTCGCTGCTTTGGACCC CCGTGCGCCTGCAGGGACCCTGTGTCTCCGGACTCTTGTGGAGCATTCGGGCAGAGTTTTCCGCCTGCAG TTTGACGAGTTCCAGATAGTAAGCAGCTCTCACGATGACACTATCCTCATCTGGGATTTTCTCAACGACC CAGGTGCACATGCAGAATCAACGCGTTCACCTTCTAGAACATACACGTACATCTCCAGATAAATGACACT ACGTAGTACCTCACAGTTGTACAGGACTTGCTTGAAAAGTATGGTAATTAAACCGCCTGTGAACTCCGGG AAATAAACATTCTACTTGACCAGTATTTGCTGAAAAAAAAAAAAATTAGAGAGAGACCCATTATCCTGAT TCATCCTGGAATATTGCTGTCAGGCAGCTGGGAGCAGCCCGGGCCAATCTGCACAGTGGACTGCAGGATT TGCTGCCATGAGAAGAATTCTTGTATTTCCTTCATTGTCCCCGGAGTTTGCAACTGATTGCATTGCGATG GGTTGCACACTCCAGTGGCGGTGGCACGTTACTCCAAACGTGCAATTTTAGAGATGAAACGCGAGAGACT GTAGCAGTCACAGGTCTTTGAAATATATTTAAATGTCTTGCCAGGATTCCTGTTGCTTTGCTGTAAGCGA AAGAACAATTTTCATTTTTTTTTTGTCCCACGCTCACGCTGCTTTAAGGTGTGGCTACGTTTTGGAAATC TGCTGAACGTTTTTTGCAAGTACTCGTGAAGTGAAAAAGTGGGTAATGGGTTATTTTCTTTTAAGATGAT GACTAAGACCCCCCCAAGTGATATAAAAATGTATGTTTTTATCATAGTAAGCATGAAAGGTTATTTTTTA TTTATTATTTTTTTTCCATTCATTTTTTTTTTTCATTCTTCAGTGTTTGCGTGTATATCCAGTTTTTCTT TTTTTTTTTTTTTTTTTTCTCTTTCTAGTTTTTTTTGCATATAGTACCAAATCAAGTGTTGTAGTTATCT GTATAGTTCTTTATGGGCCATTAAAAGCTTAGAAAAAAAAAATTAACCCGATTAGAGATGTTCTTATCAA GTGGCACAAGGGTAAGGATAGCGCAAACTCACTTTCCCTCTCTGTATGTGTCTCCATTTAAGTGTCTCTT GTTTTTATAGTAAGGGGTTTTCCTTCTGCTCTTCCTTCCTCGTTCCCTGACTTGGCACAGCAGTGCGTGT CTTTCCTGGTGGTGTTTCTTTTTGTCCCCGCTCTTGTACTGACTGTCACAAAGCACCATGTTTATTTTCT ACACGCGACTACTAACTCGTGCTTTTTGATCTTTGCCGGCAGCCTTATTTGTCACGATACTCTTCGTAAG TAGTTAAACTCATCTCTTCTTGCATGTGAACCACTATTAAATATTCTGCATGATCTGAAAACTGAGGTAC AAACACTTAAAAGTAACAGTAAATTATAATTTAATCTTAAAGAAGAAAAAAATGCACTTGTTTTCTGTCC ATTACTTAAAGCCAAACTTGTTTTTTTTTTTTAAAGAGACACTGTTAAAATCTACTCTCAAATCCACCAC AGTGCATACGTTTAATTCAGTTAGTGTTTAGGTTTGTGATTAAGTAAAGAAAAAAATGTTTGACGTTGGT GTATGTGCTCATATTAAATACATTAATATAGGGGATTCTTGACCTATAGGTAGGGAGCCATACTCTCTCT AGGGAAGGTGCCTACAATCCCCTTTAATACATGGATTCCTATTGCATAAAAATGAATGACTTGAATAGAG ATATTGAGTTCCCGAATTAGGGGGCTCAGAGATAAATGTTAAGAAACACTGCTTAGCAGTTGGAGTTTCC CTTCATTCATTTTCAAATCTTTTTGGGACACTGTCCATATTCTGAGAAGCAAAATGACTATTCCAAAAAA AAAAAAAAATTACTATTTGCCATTGGACACAATAAGGACGCAAGACCATTGCTTGACGATGTCCTGCTCC TATTTAGGAAAATGAAGGGAAATGGAGCTTTAGCCTATGAAGATAGCGGGATGAATTGAGGGCAAAATAC ATTGATCGCATGCATTACTTTAATCCAGGAATTCTAATGATGTCAATAGGATCATTTTCATTCATCAATA GTGACATTATATTGCCCCGAAATGGCACCTCTTTGTGGTACAAGCAACTCTAAAGGATTGTATTACATGT TAGAGAACTTCCTTGTGCATTAATTCTCACTGGAGCTATCCGACTGCCATTCTACCGCCACAACATGCTA AAGATTACTTTTTTTCCCCCGATACATTTGTAAAAGTAAAAAACGAAACAGAAAAACCCTGTCAGACGCA GCTAAAGGTACGCAACATCCTATTGCATGTAATAAGGGCAAGCTACTGAAAATATGCTAACAAGTTAGAG AGCAAAGTTAAGACCCTATAAGGGCTTAGTCTGCTAATTTTAGCCAAAATACATATAAATATCACTGCTG GTTTCTACTAAGCAACAAATCTATAACAATTTTTGTTTCTCTTTTGCTGTCGGATCCCTTGTATGGAGGC ACATTAGCTTATAGTTATGTCTTAAATGCATGAATTGCTGAAAATGCTTGCTGCAAAATCAACCATTGCT GTTTGCCATGTATACAATAACCAGGAATAGATGTCCAAACCAGAAAACAGCCTTTCCAGCATCTTCCCAT TGATGCTCGGAACGGTTGTGCCTTATACCAAGTGTAAATAAGTCATTCCTGTTGTTGTTGATCCTGATGG TGTGTGTAGTGGGTTGGCACCATTCCCACATTTCCCTCCAAGGGGGGGGGGATATGAAGTTCTGAAATCC TCAGCCATTATTTTGCCTTTGTGTAAATCAATTCCTGCCTATACTGCTTTGCTATAAAGGTATCTGTGGT GTTGTCATCTAACTGATAAGTGAGAAAGCACATGATTTTACCCTTTACTTAAATAAATTTATGTAAAATA AAAATATGAAGTAAACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
