Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041569137.1 PREDICTED: Xenopus laevis castor zinc finger 1 L homeolog (casz1.L), transcript variant X5, mRNA TTGCAACAGATTCTGCCCTCTCACCTTAAGCTAGTTGAGCGCTTTAGTGCGTTCCCGTCTGAATATCAGG ACGGTGACAGTTGCGCAGAAGGCAACACGAAACTCCAGTCCGGGCTTTGCACTTCGCCCCCTCCTGCTGC TGCCTTGTTAGAAATAGGAAAATTCAATAATAAAGCAGCGAGGAGGAAAAAAGCCCAGGATCAGGCAAGT TAGATGGCGCATGCGCGCAACCTCCATCCGAAACACACATTTTCCTTTACTTGGAAAGTCACCCAAAGCA GTCCAAGTGCAGAGATTCCAAAAATCAATCCAATAAAACAAAGATAAGAAGAAAGAACATTTTTGATGTG TAAGTTGAAATGGAGGTGCCACCCAGACGATTATTTAGCTAAAGGATGAATTGACAATTAAACAGAGGAA AGGGGCGTCTGGGTTTATCTACACAAGCTGAAAGAAGTGTTTGCACTGACACAACCTCAGGAAAGCCGAA GATGGCTGCCAAACGAAAAGGCGGCCTAAAACTAAATGAAATCTGTGCCAAACTAAGCCGGCAAGTGGTG TCAGAACAGGCATCGGACTTGGGAGATGGGGATGTTGGACCTCTGGATATCAGGGAAAGGGAAGGAGAAC AAACACAAGAAGGAGACCCCACAGACTCTCTGAACTCTGAGCAGAGGAGTGCAGAAGAAGACAAGAGACG TAGAGAAGTAATAGAGAAGTGGGTTAATGGAGAATACACTGATGAGCCCCCTGAAAGAATGATCAAGGAC TTTAAGAAGATAGGGGCAACTGAACTTCCCCCTGAAGGCATCTACATGGTACAACCAAAGGGATGTAGCG ATGAAGAAGACAACACTGAAGAACCGAGAATTTCTCTAGTTGGTAAAGTCCCCGAGGAGAGAGATTTAGA GAAGCCTGTTTTAAAGGATGCAGCAGAGGCAGCTATTAAACAAACCTCAGGGGCATCTACAGGAGAAACC TCATCCCTGCGTGATTATGCAGCAAACACTATGAATGAATTTCTTGGAATGTTTGGGTATGTACATCCTA ATGTGCGGGATGAGCTTGCAAAGAAGATCAGCTTTGACAAACTAAATGCTGCTACCTCGGAGCCCCATAC TGCTGAGGATGCACTCAGCAAACGAGCCAGGTTCTCTAAATATGAGGAGTATATCCGTAAATTGAAGGCC GGAGAAAACCTTTCTTGGCCCCCACAAGTAAAGAAGTGTGACGAACTGAACCCTAAAACAATGCAGGTTA AAGAAGGAGGAACACAACAACCAGCACAGCAACCAATCACTGGCAGACTACCTGGACTTGATTCAGGCAT AGTACAAGAGATGAAAACTTCTGTTTTGCCCCTTTCAACTGCTACCACCTCACATATGCAAGGTCTTGTA TCTAGAGCTTCCAAATATGATTTCTTCATTCAAAAGCTAAAAACTGGAGAATCACTGAAGCCACAGAATG GAAATACATATAAGAAGCCCTCAAAATATGACCTGGAGAATGTCAAGTATCTTCACCTTTTCAAACCTGG AGAGGGTAACCAAGACATGGGTGGTTCTATTGCTTTCAAGACAGGGAAAGTGGGCCGTCCTTCTAAATAT GATGTTCGTAATATACAGAAACTCACCCCACTGAAGGCAGCAGCAGTTGTTCCAAGCCTAACTCCAGCTT CTCTTACGAGCAATCCTACCACCCCGGCACCAGCAACAGAGCAGCCTGTGACATTGCCCTTCAATACTCC AGAGTATCTTAAATCAACCTTCTCAAAAACAGATTCTATCACTACAGGGACAGTCTCCACAGTCAAGAAT GGACTACCCCCAGATAAGCCCCCTGAAGATGTAAATATTTATCAGAAATATATTGCCAGATTTTCAGGCA GCCAGCACTGTGGGCACATTCATTGTGCATATCAATACCGCGAACACTACCACTGCCTGGACCCTGAGTG CAACTACCAGAGATTTACAAGTAAACAAGATGTAATTCGACATTACAATATGCACAAGAAACGTGATAAC TCTCTTCAGCACGGTTTCATGAGGTTCAGCCCGCTAGATGACTGCAGTGTGTACTACCATGGCTGTCATC TGAATGGGAAAAGCACACACTATCATTGCATGCAGGTGGGCTGTAACAAAGTATACACCAGCACCTCTGA TGTCATGACACATGAAAATTTTCACAAGAAGAACACACAGCTGATAAATGATGGCTTTCAACGGTTTCGC GCTACAGAAGACTGTGGCACTGTTGATTGCCAGTTCTATGGACAGAAAACTACCCACTTTCATTGCAGGA GACCTGGCTGTAGCTTCACTTTTAAGAACAAGTGTGATATAGAGAAGCACAAGAGCTACCACATAAAAGA TGATGCTTATGCAAAAGATGGTTTTAAGAAGTTCTACAAATATGAAGAATGCAAATATGAGGGTTGTGTA TACAGCAAAGCCACCAACCACTTTCACTGTATCCGTGCTGGCTGTGGCTTTACATTCACTTCCACCAGCC AGATGACTTCACACAAGCGCAAACATGAGAGGCGGCACATACGCAGCTCTGGGGTCCTTGGTCTCCCATC ATCTCTAATCGGTGGCAAAGACAATGACATTGAGGAGTCCAGCAATGATGACTTAATTGATTTCTCTGCT TTAAGTAGTAAGAATTCCAGCTTGAGTGCCTCTCCCACCAGTCAACAGTCTTCCGCACCCATGATCACTT CTGGTTCTGAGGTTCCTTCTCCTCAGACAAACAAAGTCACCAGCACTGTTCCCCCCAACAGCAAGGTCAC TGGCCTCCTTTCCCAGACATTGCCCAGTAATATGCCCTTGGCTTTGGCCCTTTCTAGTTCAGCACTTCCC GGAGCTGGGCCCTATTTCCCAATTATAAGTGGGCATGGGTGTACTTCTCTCCCTGTTAGCGGCACTAACT CAATTCCTGTAGTTGCCCCAGACTCTTCTCCACAGTCTGCTTCAGGAGCCAGTGATCAAAATAGCAATTT GCCAGCTGCCCCATCCATTATGGAAAGGATTTCAGCAAGCAAGGGGTTAATCTCACCTATGATGGCACGA CTGGCAGCAGCTGCCTTGAAGCAGTCTCCATCTCTTGAAGCAGGTAATGGCCAGCTATCTGGGCATCAAA GTTTAGGAAGTGCCGGCACAGATTCTACAGACACAGAGGTTACACCATCTCAGAACACTTCACAAGAGCA CAGTCTGGATCTTAGTTTGAACAGTGAATCCAATGGCCAGGAAACTGTCTCTGACCAACTACTCCAAGCA TCACTTGTGAATAAGTCCAGCTCTATTCCTGGAAATTTGCTCAGCCTTAAAGCAGATGCTGATAGTAATG ACTCTGGGACTGTGGATTCAACGCATTACCTTGGCAAGGTGATGAAGGCTCTTGCTCAGGAAAAGCACAA AGAGCATTGGAAAACATACCTACGCAGGTTTGGTCCTACAGATGTATGTGACCCTCAGTGTGACTTCCTG CACAAGCTTCACTTTCACTGCGTGGTTGAAGAATGTGGAGCCCTCTTCAGCACCTTGGATGGAGCCATAA AACATGCAAACTTCCATTTCCGGACTGATGTGGGAACTGCAAAAGGCAGCTCTGACTTCCCTTTTTCAGG AGACATCATAAGTTCCTTGGGTCCCTCAACACCCCCATTGCCTTCTACTATGCCCCCTGGATGTGAGGTA CCAGCTTCCTGTCCAGCTGCTGTGCCATCAGCACCAACTCTACTTGCATGGAAGCAGCTGGCATCCTCTA TCCCACAGATCCCCCAAATACCAGCCTCAATGCCCAGTCTGGCATCATGTCCCATGACAACTTCTTCCTT GGAGAATGCAAAGCCTCAAGTCAAACCTGGATTCCTGCAGTTTCAAGAAAATGACCCCTGTCTAGCCACA GACTGTAAATATGCAAACAAATTTCACTTTCACTGTCTGTTTGGGAACTGCAAATATGTCTGTAAAACAT CAGGCAAAGCTGAATCGCACTGCCTTGACCACATCAATCCAAATAATAACCTGGTGAATGTTCGGGACCA GTTTGCATACTACTCCCTCCAGTGCCTGTGCCCTAATCAGCACTGTGAGTTTAGAATGCGAGGGCATTAC CACTGTCTACGTTCCAACTGTTACTTTGTTACTAACATCACAACCAAATTGCCATGGCATGTAAAGAAGC ATGAGAAGGCTGAAAGACGAGCAGCAAATGGCTTCAAGTACTTCACTAAAAGGGAAGAATGTGGAAGGAT TGGGTGCAAATACAATCAGGTGAACAGTCACTTCCACTGCATTCGAGAGGGTTGCCAGTTTTCATTCCTG CTGAAACACCAGATGACATCACATGCCCGCAAGCACATGAGGAGGATGCTAGGGAAAAACTTTGACAGAG TACCTGGCCAGGTTGTTTCTCATGGTGCCAGAAGTGACAACTTCTCCCAGGTCACCACAACAGCCAGCCC ATCGTCTATAGATACATCTTTTCAAACTACACCTCAAAATTTCCTGGATACAGAGACTGATGAATACTTG GACTACACTGGGGCAGGCAGCCCTGATGGGATGTCATCTGAGTCCTCCAACATGGATCGCAGTTGCTCCA GTACTCCAGTAGGCAACGAAAGTGCAGAAGCAGGCTGCCTGGTCCCTTCTGCTTCTGAAGACGCTCTCAC CCACAATGTACCTCCACCACCACCTACAGCAGCAACGGCTGTTCCTCATGCTCCTTCCTTTACACCTTCC TTGGTCAGGTCTCCTCTTACTTCCCTCCCGTATCTGCTTTCACCATCCTGTGTCTCATACTCCCTGATCA CTGCCAGCTTGGGTGTCGGCAGGGGCATTGTGGTGCCCACCAACAGCGCTCCAGCTTTCACACCAGTTAT AGCCACTTCTGCTCCAGTCAAAAATGATGTCCCTCTAGTACAGGATGCTGCAGGCAACACCATCACTATG CCAACAGCTTCTGGAGCCAAGAAAAGGTTTTGGATAATTGAGGATATGTCTCCTTTCGGCAAGAGACGCA AAACGGCTTCTTCACGCAAAATGTTGGATGAGGGCATGATGTTAGAGGGTTTCAGACGTTATGATCTTTA TGAAGATTGCAAGGACTCAGCTTGCCAGTTTTCCCTAAAAGTCACTCACTACCATTGCACTAGGGAGAAC TGTGGCTATAAGTTCTGTGGTCGGACCCACATGTACAAGCATGCCCAGCACCATGACAGAGTCGACAACC TAGTTCTTGATGACTTTAAGCGATTTAAATCCTCCCTAAGTTGTAACTTCCCAGATTGTCAGTTTTCCGG CAACAGTACACACTTTCACTGTTTGCGGTGTGGCTTCCGATGCACTGACAGCACAAAAGTGACAGCTCAC CGCAAACATCACGGCAAGCAAGATGTCATCAGCGCTGCCGGCTTCTGCCAGTTTAGTTCTAGTGTAGATT GCGAAGTGTCTGATTGCAAGTACAAGCTTAAGTGTTCCCACTTTCATTGCACTTATCCCAGCTGCAAGCA CACGGTGGTGGGTATGTCTCAGATGGACTCACACAAACGTAAACATGAAAAGCAAGAACGAGGGGAACTT CCATCAGTCTCCCCAGGCCCTGAGGGATTAACTCAGACTGGCACTGAATATGACCTCCAAAATCCACCAG TAAACTTGGACAGCTCCCTGAATCTGAGCACAGACAACCACAGCTCACTTCTCTTCCTGCAAAATCCAGT TGGAGTGGGATTAAATGATTCACTAGACCTTAGCAAGAAGCCACAAGATGGGCCCACTGCAGACTCAAGA CAAGAACTTCGGGACAACCTAGCAGGGCACGCTGGAGATGCTGATGACTTTTTATCACACGATGAGGACG ACGATGATGACGACGATGATGATGATGATGAAGAAGATGAAGAAATGAATGAAGATGAGGAGGAAGATGA GGAAGATCTTAATTCAGATTCAGATGACTCCTTACCTGTTGGCAAGTGTTTAGCAAGGAAAGAAGATGAA GAGAATACAGTGGGTGCTATAAATCACTGTGACACCTCAAAAATCCCTTTAAATCTCCAAACATCCCCTT AAATTTGTTAATGTATAAATGGAGGGCCCTGCTCTCTGTCTATATGGAAAAATAATAACAAGTAGTGAAG GAAAAGAAGCCTAAATATTGCTGAATGTGTTCTGCTCCTGACTAGGCCACCAGTTGAGGCAAATCCTCAA AATGAAAGCATGAATTCTGGTGCATGACACCAGTGGGACAAGATTAAGTGACTTCTTGCAACTTGAAATC CATCTTTACTCTACCAGATATGGAAAAAAATAAGATGGGGTACTAGTTGTTACTCCTCTAGCACCAAAAA AGGGGAGGAGCTACTGTCTTTTTAAGCTAGAGGAGGCAATGGGCTGGGTTTGTGGGTATTTATTGACAAG CATTATTGGGTGCCCTATGCTGAGGCTCTCTTCTGTTCTTCCAGTTTCTATCTGGGTTATTCCCAGGAAG TTAATGATTTATTTTATAAATATTTATATAGAAAGCTTTCCTCTGCACCATTTGCTCTTGTTAATTTATT TATTTGGTATTGTTCCAGCATAATGAAAGGGGACTAAGCTTATATAAAAGTGGCCAGAACGGTGGCTGCT TGAAATTTGGTAACCTGGAGTGATGGTGGACAAGTGTCATAAAAGGTGGTAAAACTGCAGTTACGTGGTT GGTTCCATGTTAAAAACGCATATTTCTCAGGGGTAAGCACTCAATATCAGATGCTAGATGAGCTCTCTTC TCTAGTTCAGCTTCCCCCAACTCCTCTAAAATATGCTAGGGATCAGGATGATGTGCACTTAAATGATGAG TCTGGGAGTAGATTTGTGCTAGCCCTGTAAGCAGCAAAAGTTTGAGAATTGGCATTGCACCTCAGACCTC TGAGTATAGCACAGGATATCCTCTCTCAGGTAGAAAATCATTCAGCAAAGAAGCTACTTCATAACATGGT GGGAGTGAAATGAACAATTAAAATGTTGCCATTTGGCTTAGGTAATATTAAATTAATGGGTTCCAGGTTC TAATGGAAACAGTTTTCTGAAAAAAAGCAAATCGAAAGGCTGTAATTTGAATTTTATTACATGTTTGGAG TGTCACCACCAAAAAGAAAAACACTACTTAACCTCCCACTTCTACCATACAGGAACTACACATCCACCTT GCCATGTTTCCAGTCTGAAATATATTTATTACCCTGAACAAAGAACACAACAAAAAAATATGGTTGTAAA ATCTATAGTGTTCGCAACAAATGGTGTCAGAGATACAGATGAATTATGATTAAACAAAAAAAAAAAAAGT TGTACAGTATTTTTTCTGTAAAGGTTATATATAGAACAAAAGGTAAAAATAAGAAAAAAAAGCTTGCATA AAGGTGGCATGGTGTTATGTCTGGGCACCTTCAGGCATCAGCATTATCACCTTCTCCCCGCTCTAATCGC TCTTTTGGTTTTCTAGTTTCTGATTTTATGGAGTCGGGAAGTTTGACTTCACTTTAGCACTGAAACGCGA TTCCGACTTTTAACTTGAATTTTATAGAAAAAAAATGAAATGTTCAGATAATATGAACAATTGTAATCTT CAGATTGTTGCTATAAGTTTGTAGTTATTTAATTTTGTGGGTTCACACACCCCTTCCTCGATCAGTTCTG TGTGTTTTTATTTTTAGTTACAGTTTTCCCTTATTTCTTTGTATGTCAGTTGTGACACGAGACTACAACC TGCACCTTTTAACTGTGGATGATGCTAACATCATATGAATTACATTCTAGTGTAGTCTTTCTCAGCCACA ATAAACTTGAATTCAGGTTTGGAGGTAGGAAAGGCTAGGAAGTAATGCACCCCATTGGGTGGCTAGACAA CTTCAGGTCATGAAAGCTGCACCCAGGCCAGGCTTTTATTTCTATGTTTGATGGTTTGTTTGTTTTTTAT ATCTCCATACTCAAGTAGAATATCTATCAAGTCTGGTCTGTGTGACTTCTGGACCTACCTTGTCTACCTA CTGTATGCTTTGTATTTTTACTCTGTAACACAACAGACGTCTCTTTCACACTCCTGCTGTTCTGTACAAC TTATGCATCGAAACTGACAAATTCAAATGGCACTTTTAACTGTATTAAGAATAAAATGTTGCTTGATGGT CCAGCACCAGCAAGAGAAGTGAAGGGAGAATAGAGTCAGTTACTGAAATTCCCCAAGGAGAATCTGAAAG CATCACAAGATTGGTTCATTTCTAAAATCTATATAACTAAAGCAAAAAAATAAAACAAGAAAATCCATTT ACAATGTAGCAGAAAAAGGAGATACAATGAAAATTAAGAAACTATTAAGTTGGAGGTTTTATAAGGTTTG TATTGCACAGTAGGACATAAGCCATCTCCAACTCATCTTCAGAATTTAATGTGTCATTTTGTTTTAACTT TTCTGTCAAAACAAAACTAAGGTCTTTCTTTGCACTGGCTAATTACTGTTTACTATCTATATCTAAATAC CCTAGTTGTATAATGATATCGGTATAGGCATATGCATGTGTCACTGGGTGTGTGAGCTACATATATGAGA ATATATACACACAGACACATATATGTATTACATCCAATAATTCGAAGAGTAACCTAAAGCCAGGAAAGAA TATGTACCGCAACATACTTGAATTGGATTTTCCCACATTGCTAAGAACTGAATATTTTTCCACTTGAATT TAGTGCTGTTAGAAATTTAATATATGTGTTTATTTATTTGATTTTTTTTTGTGCATGACTGATGCAAGGT TTGACATTTTCACTCAATAAAAACTGGAAAAAGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
