Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041588523.1 PREDICTED: Xenopus laevis plexin B2 S homeolog (plxnb2.S), transcript variant X10, mRNA AGGACTTATACTTAAATTGTTACTGTGATTCTGTGACTTCTCATGATAGTATTTTGTAGCCCACCGCGAT ATGAGCGTTTACAGGTAGCGCGTACCCGCAATTGCCACAGACTGAGGTACTAATCACGCTTTGTTTTGGA ACTACATATTAAGCCAGGGCTTTTTAGGGCATGCTGGGCACTGTAGTGCGTGGGAAATGAAGCTTCGGCG AGTGAGTGGCAGCGCCAGTTCAGGTCCATAGAGAGGCTGCCTGTATTTGGAATAGACTATTGTACCTATT GACAAAGAAAGCCTGATGGAATTCCTTCAAAGGCAATCAATGATAGCCCGTGGCTATTGCCTGGTGGCCA GAGAAATTCCTTTACACCCCTCCTAATCCAGTGCCTCTATCACCCCCTCCCATTCCTTCAGTGCTCCCAG TCTGAAATCCGATCCTCCTCAGCCGGCTCAGAGGGGAGGACTCTCTCCCTGTTATTCTGCCTCTTTTTTT CCCTGCTTCCTGTTTCTGGTATTGTGCTGGGAGCGGATGTGCGCAGCGCCCACAGGTGTGTCTCTTCTCG GCGCTCAGTACTAGGGGAGTCGGCTGGGGAAGGCAGTGCGCGCTTGATATGGGCACGGTGAGGGCAGAGG GGTCCGGGCGCGGAGCGGCACTTCATTTCTCTGTGCGTCTCCATTGAGTCTGGGAAAGCCGCGGGGAGCA GAGCCAAGCTGGAGACTTCGATTTGGCATTAAAGTGCAGAAACTTGGAGGCATCTTGATATTCCTGCAGT TAGTGGACTGCCAAAGAATTTGTCAAAAGTTACAGTTGCTGTCATATAAGGACTAGCTAACCTACACTGG GACTGACCCAATAAAAGAAATGTTGTGCTGATTTACACACAGCTCGCAACTTCCTGGATAGAAAGAGGAA GGGGAAAGTTGACCTTCTAGGTGCCAATTGTGACTCATAATAATTAAGAGGCACTTTCCAACAATGGCTT TATGGATTCAAGTTGCCAGCCTATTTATCTGCATCATATTGATGCCACAAGCACAAACATTTCTTTCTTT CCTTAGTGACACAGATTTAAACCATCTTGTTGTTGAAAGTGACACTGGCATTGTTTATATTGGAGCTGTA AATCGTTTGTACCAGCTTTCTGCAGACCTCCATCTGCAAGAAAATTTTACCACAGGTCCAAAATTAGATA AAAAATCTTGCACACCACCCATTGACTCCCAGCAGTGTCCCTCTGCAGAAATGACAGATAATTACAACAA GCTACTGCTGTTAGATAAGCCATACAAACGCATAATTGTATGTGGCAGCATCTTTAAAGGAATTTGTTCA TTGAGGGCTATGGGCAATATTTCAACAGAGCTTTGGTATGAAGATAACAGAGGAGAAAAGTCTTTTGTTG CAAGCAATGATGAAGTTATATCTACTGTTGGATTGGTCACTTACAATAAAAAGGAAGGTAGAAGTCTTTT ATTTGTTGGAAAAGGCCATGTACAAAATGACAATGGAATTATCATAAGTACACGGATCCTGGAAAAGAAA GACGACAGAGATGTTTTCGAAGCCTATCAGGACTCTGCAACATATAAATCTGTTGATCATGTAAAGCATA TTCGGCAATTTGTAACTGCTTTTGAGGTTGACCATTATGTATATTTTGTCTCAACACGAGCAGATCAGAC TTTTATTTCCCGGCTGTGTAAAGATGACTTCAACTATTATTCCTATATTGAGATGCCTCTTGAATGTAAA AACCAGAGGAATAATGAGAGCTACCATTTCAGCCACTCAGTTTTCGTTACCACCCCAGGCAGTTACTTAG CAGACATCATGCAACTTTTATCCCCAACAACGGCTGTTCTATTTGGTGTTTTTAGCAAAAAACAAGTGTC AGATCAGTCTGTCGTCTGTATGTTTTCCCTCTCTGAGATTAATGAGAAATTTGAAGCAAACCGTAAGAAA TGTTACTCAGAAAATGCCAAGGATTTATTTTTTAAGCCTTATGGCAGAGACCTGTCCTGTGGATCTTCAC AAGAGGATTCTGCCAGCAAATATCCCTGTGGGTCAGAACACTTACCCTACCCCTTGGAGTGCAAAGAGGG TGTATCCAAAACGTCTGTGTTAATAAGAGAGAAGAATCCTTTTAACTCAGTTGCCATTGCTGTTGAAAAT GAGCACACCATTGCATTTTTGGGGACAGCTGAAGGAAAGCTTGTGAAGGCTTTCATCAGAAACGATTCAT ATGAGTATAGGATCCTTTCCTTTGATACATCGAGTGCAGTGAAGAATGGCATGGTGTTTGATGTTGATCA AAAACATTTATATGTAATGACTAAGAAAAAGGCCTACCGAGTTCCTGTTCAAGACTGTGCCCGTTCTTCA AATTGCAATGAATGCATCGCAACAAATGATCCTTATTGTGGTTGGTGTGTTCTTGAAGGAAAATGTACAA GGAAAGTTGATTGCTTAAGGAACAATGATAACAACCACTGGTTATTTAGTCCCTCTGGAATATGTATGCA AGTCAAGAGTGCGACCCCAATGAATATGAGTGTCATGTCAGTGGGCAAGGTTACATTAACTGTGGAACCA TCAATAGATTTACTAGATGATGATAAACTTATGTGTGACTTTGGAGGAGAGAAAAGTAATGCTGAGTTGC AGCTAGATGGGACAATCTCTTGTCAACCCCCAAGACTAATTCCACCCCCAGAAAAAGGCAAAGATAATGT TAATATTACAATCAGCCTACGCTTTCAGAAGACTGGTGATGTGTTTTTTGCAAATTATTCTTATCCATTC TATAGCTGTAAAGAAGCAATTAACCTTTCAGAGAATTTGCCATGTACATCCTGTGTAACTAGCAGGTGGA ATTGCCAGTGGGATGTAAATAATCACAGGTGTGAGGACTCCTCTCAGCGAAATGATGTTATTGAGCCTAA TATGGAAGAAAATTGTCCACAGTTCTTTGAACCCAATCCATCATTAATTCCAATGAAACATAAAAGTACC ATAACATTTAATGGGAAAAATCTTGATCACTATAAGGATGAAGATTTCAGTGCAGGCAACGATGAACTAA ATTTCAAAACCTTTGTGATAAAAAAAGAGGAATCTTTCTCCATTTATATCCCAGAGTTCCCTGCGGAAGA TAAAGAGACGGTTCCTCTGGGTATTTACATTAAATTGAATGAAAAAAAGATTGACAGTAAATTAAATGTT AATCTATACAACTGCATGTATGGCAGAAGTGACTGCAGCCTGTGCCTTGCTGCTGATTCCATATACAATT GTGTCTGGTGTAATGACAAATGTGTATACAAGGATATGTGTGTGGACCTACCTACTACAGAGTGCCCAGA TCCTGAAATAACTGATTTTGTGCCAAAAGCAGCGCCTTTAAACGGGGGAATTCGTCTGACCATAAAAGGA TCAAATTTAGGAATAAAAGCTACTGATGTTGAAAAAATAACAGTGGCAAACACCCCATGTACATTTCTTG AAGAATTCTACTCTGTCTCCACAAGTGTTGTTTGTGAAGTTGGACGTGTGAATGGAGCTATTTCAGGCGA AGTTAAAATACAGATCAAAGACAAGACGGGAAGTTCAAGCCAGATTTTTAAGTACCAGACTCCAAACCCA GAGTCTCTACATCCCATTGAAGGCATAATGGCTGGTGGTACCCGCCTGACAATTCAGGGCCAAAAGCTAG AAACAGGATCCATGGAAGATGTCAGAGTGACACTTGATGGCATACCTTGTGCAGTCAAATCTTTTGGTGA AGAAATTGTTTGTGATACAGGAATGGCTTCCAAAACAGGAGAGGTTGCAGTAATGCTGTTTTATGGCAGC GATACAAGAATAAATGCTGGTCACTTTATATACAAAGAAAATCCATCAATTGCTCATTTTACTCCAGACA GAAGCTTTGCCAGCGGTGGGAGACGTATCACAATTTCAGGGTCAGGATTTAACCTTGTGCAGAATTTCAG AATTCTTGCAAAACTGCAGGGAGAAGACAGTCCTATAGTTACAGATGAAGAATCCAAAACAATTGCACAG GAAGACGTCCTTGAAAAAGCCAATGACTCTATGATTATATTTTCATCTCCACAAGTGCCAGAAAATTACT TGAAATCTGGGGTTATAATTGTGATTAAAATGGATGGACTTGAGTTACCTCTGCAGGCCAATGAACTTTC TTTCACTTACATCCTGGATCCTGTGTTTGAGAATTTCACTGATGGTATTAAGAAGCAAGTGAATAGTTTC ATAAATGCTAAGGGTTATAATCTCAGTGCTGCAATGACAATTGAAGAGGCTGAAGCATTTGTGGGTGAAG GCATCTGCAAGATAAACACTCTTACATCTACTGACTTGTACTGTGTCCCCCCGGAAGAACAACCTCCACC AAAGAGACGTCAAAAAAGAGACACCGCTAATAACTTACCAGAGTTCATAGTAAAATTTGGGAAGCGTGAA TGGGTCCTGGGAAAAGTTGAATATGGACAATCCCCTGCTATTCCTCTTCACATTATTATTCCGGTTGTTC TCATTCCAATGCTTCTTATCATTGGAATTGCAGTTTACTTTTACAGGCGGAAAAGTCAACAAGCAGAGCG CGAGTATGAAAAAGTCAAACTGCAACTCGATGGCTTGGAAGAGAGTGTGAGAGAGCGATGCAAGAGGGAA TTTACAGAACTAATGATTGAGATGGAAGATCAAACCAGTGACCTCAGTGAAGCCGGTATCCCTTTCCTAG ATTACAAAACATACACAGACAGGGTGTTCTTCTTGTCATCCAAAGATGGGGAAAAAGATGTGATGATAAC TGGAAAGCTGGATATCCCAGAAGCCAGACGGCAAACTGTAGAAGTAGCTCTAAACCAATTTTCTAATCTT CTCAACAGTAAATCTTTCCTTACAATTTTCATTCACACTCTAGAAAGCCAAAAGGACTTCTCTGCCAGAG AAAAGCTCTATTTAGCCTCCCTGTTAACGGTGGCTTTGCATGGAAAGCTGGAATATTACACTGATATAAT GAGAGCATTATTAATGGAGTTGCTGGACCAATATGTAGCCAAGAACCCCAAGCTTCTCCTTCGAAGGTCA GAAACTGTTGTGGAACGGATGCTTTCAAATTGGATGTCCATATGTTTGTACCAGTATTTGAAGGACACTG TTGGCGAGCCTTTATACAAACTCTTCAAAGCAATCAAACACCAAGTGGAAAAGGGCCCAGTTGATGCTGT GCAGGCTAAAGCCAAATACACACTCAATGATACCGGATTGCTAGGGGATGATGTTGAGTACACACAGTTG ACAGTCAATGTAATTGTACAAGAGGAAGGTGCAGAACCAGTACCAGTAAAAGTGCTGAACTGTGACACTA TCACCCAAGTAAAGGAGAAGATTGTTGACCAGGTTTACAGGAACATTCCTTATTCCCTACGGCCTAAGGC TGATAGTTTGGCTCTGGAATGGAGGCCAGGGTCTACTGCACAAATACTCTCTGATCTGGATTTAACATCA CAGAAAGAAGGGAGGTCGAAACAATATAATACACTCATGCACTACAATATCAGGGATAATGCCACACTTA TTCTGTCCAGAATGGGGATTTCTCAACAACAAGAGCAAAATCACCAAGACATTCCAGGAGAACGACATGA ACTGTTAGAGGATGAAAATAAAGCATGGCACCTTGTCCGTCCAGCTGATGAGGTGGATGAAGGCAAATCA AAGAGAGGAAGTATGAAAGAAAAGGAAAGAACCAAAGCAATAACAGAAATATATCTAACTAGGCTACTTT CTGTGAAGGGTACACTCCAGCAATTTGTAGATAACTTCTTTCAGAGTGTCCTTAATTCTAATCAAGTGGT ACCACCAGCTGTGAAATACTTCTTTGATTTCCTTGATGAGCAAGCCGAAAAATATGAAATCAAAGACGAA GACACAGTCCACATATGGAAAACAAACAGTTTATCACTAAGGTTTTGGGTGAATATACTGAAAAATCCAC ACTTCATTTTTGATGTGCATGTTCATCAAGTAGTAGATGCTTCCCTGTCAGTCATCGCACAGACTTTCAT GGATGCCTGCAGCAGGACAGAGCACAAGCTTAGCAGAGAATCTCCAAGCAACAAGCTATTGTATGCAAAA GAGATCTCAACTTACAAAAAAATGGTGGAAGACTATTACAAAGGAATCCGCCAGATGGTACAAGTTAGCG ACCAGGATATGAATACGCATTTAGCAGAAATTTCAAGGGCTCACACAGAGTCATTAAATACCCTTGTAGC ACTACATCAGCTATATCAATATACAAATAAATACTATGATGAGATAATAAATGCTCTGGAGGAGGATCCT GCAGCACAGCGCATGCAGTTAGCATATCGACTACAGCAAATTGCCGCAGCACTAGAGAATAAAGTGACAG ATCTTTGACCGGAACACCCCACTAAAAACACGTTTTCAAATTGAAGATGTTTTTCCTCGTGAGAGTGTTA TATTTTTTAAAAGTCCTATTACCTTTTTTTAAATGCACCTGGCGGCACGTATCATTGCATACGCAGTGTA GAAAACTGTGCTAAGGGAGCCTTTTTTAAAATATCTCATATAATTGCACAACGTGTTCAGCATTAACAAT TTTTACATTTGTTATACAAACATACAGCATTTTTAGTGTTATTTATAGTCGAGCAATACATGGAAAAAGC AATCATTTTAACATATTAGGACTTGGTTAAGCCACTCCCCCCTCCTCAGCTCATAACTGTAATAATTGGA CAATGTGGTGGTTACACTTGAATTTGTGACCGCACTTCCATTTACCACTAAGTGCTACTGGGGAGAAGTA ACTGCTTTTTATTTGACCAGATTTGAATGAATATGAATCATGGATGTCAAAGGTACCAAAAGAAGAAGTT TCATACATTTAAAGCACAAATCGAGATTTTCTAGCTCTTCAATTCCTTTTTTTACTCTGAACTTTATTTT ATATAAATATACATTCTAATGTGCCTTATATGTAACATTTTAAAAAAAAAAAAAAGACATGATTTTGTAA AGAATATAGAAAATTTATTTATGCCACTGATTTTCTTTTTGTGAAAAATTGTGACCAATCTGTACGTTAA TGATGTATGAATACAGTAAACATGGACATGATTATGTACAATTTTAATGTTTCTCTCGTATTAAAATGTC ATTGATATTGTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds