Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041582588.1 PREDICTED: Xenopus laevis Sp1 transcription factor L homeolog (sp1.L), transcript variant X1, mRNA ATTGGGCGGGAGGAGCCGCCCCTCAGCGGGAGTGGTTAGGCGGTCTGTCGATCTCCGCCCGTAGCCACGC CTACTCACCGTCTCCGCCGCGCGGCACCAGGTTAGGTTGCCATAATCAGCCGAGGTTTGTGTGAAGTACC TACGGCCCCCGAAACAACATGAGCGCAGATCAGGAGCACATGTCTGATGACATGCCTACGATAAAGTCCG AAAACCGGACCGGAGGAGGTGGATTCATCCAGAAGGGGCAGGATTCTCAGCCATCTCCTTTGGCCTTGTT GGCTGCCACCTGTAGCAGAATTGAGCCCCCCGAGAATGGAAATGGTAACAACCAGCAACAGGGTGCTACA GAATTGGATCTGAGTACTGCTCAAATTGCCCAGACAGCAAATGGCTGGCAGATTATTTCTACAGGTGCTT CCAAGGATCAAGCTGGCGGAGATGCTTCTTCTAAAAACCGCCCAATAGCCCCTGGGCAGTTTGTGGTAGC TGCACCCAGTGTGCAAAATCAGCAGGTTTTGACCAGTTTGCAGAGTGTGATGCCCAACATTCAGTACCAA GTCATACCACAATTCCAGACTGTTGACGGGCAACAGCTCCAGTTTACCAATGTCCAGCAAGATGCTTCAG GCCAGTTGCAGATCATCCCAGCTACTAACCAGCAGATTATCACCACTAATCGCACTGGTACAGGGAACAT ACTTACTATGCCAAACTTATTACAGCAGGCAGTCCCTATTCAGGGTATGGGTCTAACCAACAATGTCCTC TCAGGGCAGACTCAGTACTTAACCAATGTCCCTGTTGCTCTTAATGGTAACATTACTCTGCTTCCCGTAA GTGCGGCTTCCCTCACTCCAACATCTCAGTCAGTGACTATTAGTGGAACTCAGGAAAACATATCTCAGCC AGTTACTTCAGGGGTGGCTATCAGCTCATCCCAGTTGGCTACTTCCCAGGCTAACACTGGCATGTTCTTT ACCAATGCCAATACCTTCTCCACTAGTACCACCCCAAGTAATTACCTTATGAACTGTAGCAGTGGAGGCA GCACACCGGGCACCAATGTCCAGGTGTCTCAGAGATCTACAGGGCAGCTAAGCTTATTTACTGACTCTGT GCAACAAGGAAATGGAAACCTTCAGCAGGTACAGCAGAAAGACGGTGACCAGCAACAGCAGCAAATTCTC ATACAGCCTCAAATAGTCCAAAGTGGGCAGACAATCCAGGCTCTGCAGGCAGCTCAGCTGTCCGGTCAAA CCTTTAGTACACAGTCCATATCCCAAGATGCCCTACAGAATCTTCAAATTCAGACCTTGCCAAACACTGG TCCAATTATTATCCGTACACCTACTGTAGGTCCAAATGGCCAAGTTACCTGGCAGACCATCCAGTTGCAG AATCTGCAAGTTCAGAATCCACAAGCTCAGACCATCACTCTTGCTCCAATGCAGGGGGTTTCTTTTGGGC AGTCTGGCAATACTAATACTCTCACATCAATGCCTGCTGGTACAGTAACTGTCAACGCTGCTCAGCTGTC ATCCATGTCTGGCCTGCAGACCATTAATCTTGGAGCATTGGGAGCCTCCGGTATTCAAGTGCACCAGCTT CAAGGAGTACCTCTAACAATAACCAATGCAGCTGGGGATGCCAGTGGCCATCTGAGCATTCATGCAACAG GTGCTGATGGGCTCCACGATGATCATTCGGCTATGGAAGAGGGTGAAACAAGTCCAGATCCACAGCCACA ACCTGGACGCAGAATGCGTAGAGAGGCCTGCACCTGTCCATACTGCAAAGAGGGCGAGGGAAGGGGTTCG GGGGATCCAGGGAAAAAGAAGCAGCACATCTGCCACATTCCAGGGTGTGGAAAAGTGTATGGGAAGACCT CTCACTTACGTGCACACTTGCGGTGGCACACAGGAGAACGCCCCTTTGTCTGTACTTGGGTGTTTTGTGG TAAACGTTTCACACGAAGCGATGAACTTCAGAGACATAAGCGCACCCATACTGGTGAGAAAAAGTTTATT TGCCCCGAGTGCCCAAAACGCTTCATGAGGAGTGACCATTTGTCCAAGCACATAAAGACGCATCAGAATA AGAAGGGCCCGGGTGGCCCCATCGCCATGACAACCGTAAACCTGGACACTGGAGCGGGCTCTGATGGCAG CGCTGCTTCAACTCCAACCCCCCAGACCCTCATCACAACAAACATGGTTGCCATGGAAGCAATATCTCCA GAGGGCATTGCCCGGCTGGCGAGCAGCGGTATAAACGTCATGCAAGTGGCGGATCTTCAGTCAATCAATA TTAGTGGCAATGGCTTCTAAAATCCAGTGTTTTGGAAGGACTATTTGTTGACAATAAATAAGTGTGTTGG AATGGGTGGGAGGTTAGGCTCTATAGTAATGTAATGACATTGGGTCCAAAAAGAGGGGGTTAAACTGCTC TCCTGTCCAGTAATGCAAGGGTGTGCCAGTTCACATTACTCTTGATGGAGCTTTTTTTTCCTGTCATATT GTATCCCTTCTTTAACAGCACTGATTATTCATACATGTAGTTACTGGGAGAGACCTCCTTGTCCTCCTCA GAAAAAATACCTGCATTGTATATTTCACCAGGATATTTCCAGATGTATGCTTATGCCAGCTCTGGGCAAA AGTTTCTTATTTGCCCCCTTCGTGGGCCTCACGGATTGTCCGGTTGCCCTTGTAATGGTTAATATCCTGC CTCTGTACCACAGTCTTTATGTTGGTGTGAAGAAGGCGCACATTTCTCAGAACTCATTTATTTTTTAATA TAAATATATATATAATATTAATATTTCTATTTTCTGCATTTTACAAGCAAAGACTTAAGGTACCACCCAT AGCCATCATGCCTTGGTAAACCGATTTATCAATGCAATACGTTTTGTTTTCGTTAAACAGAGATACTATA ACTATAAAACTAGGTTCAGATGAAATACAAATGCCAAAAAATCTTTATATTCATATATCTATATATAACA AATGCTTAGACCAAAAGTCGCTTTGGTCACTGCGTAGCCTTCGTGTTTTCTAAGTTAATAAACTTTTTCG ACTCTTGCAGTTTCTAAAAGCGATTGGAAACGTTTTCTATGTAATTTGCATTATAGTTGTATCTTCGATG TTCGTTCCGGTTGAACAAGAAAGGATAGGGTTTCTTACGGTATGCTTTAACATTGACAAACCTGCAGCAA TACTGGTATATATTCATTCTGCGTCTTTGTCTGCCCCCCCCCCCATCGTTACCTTAAAGATCAGAAACCA TATCTAGGATAGACCGCCCAGAATCTAGCTTTGGTAGGAATGTCGAAAGTACTGACACCCCTTTTTCTCT ATTTTTTTTTTTTGTCTTGCAATTTAAGATACTAAACATAACTACCAGTTAATCTATAGTGCTCCATAGA TACAGGGGCCACTTCTCAGAGTATCGATCGCATCCATTGCTTCCAGACGTGCTTAAATATATAGACTCAA AGCACATTAACTAATGTAACCTCTTTTCTTCCAGCTTTTTTGTTAATCAACTAATTAAATCCGTAGCATA GTCCGGTGTTAGCATTTTTTTTGTTCTCCCACACTGGCATTGGAGAGGGACCTTTTATACAAATTGCTAC TGTAAATAATATATATATATTTTATTTTGAAAACCGCAATCGGTGGGACTTCCCTGCTACCTATTTTTAT ATATTATTGCATAGCCTATACATAAGCCATTAAGTGAAATGTATTTTTATACAGTTTTGCTACCCACCCA TATCATAACCGTTGGGGAGAGGGGGTGTTTTGCATTCTGGATATGAATAAGCAATGGGGGGGTGTAACTG TTATAAATGACTTATTGCTTGGCTGATATGAAATCTGAAGCCTGTTGCCTTGGCGGTGGATATAGGGTTT TATACATTGATTGTTAGCTCTTTCTGATCATCAAGAACGATGGGTTGTCTTGGCCAAAGGAAAAAAAAAA ATAAGAATCTGATTGTGTCAGTTCCAGATTGTCCTGCTATTATGCTAATGAAACACTGTGCCTTTAATAA TAAGGATTATAAAATGTAATGAAACCTTTATTTAGGAAAAGCCATTGCTTAAACAGACATAAACATCTTA AACTTTCTTTTTTTTTTCTTTTTAACTTAGAACGTTAGAACGTAAGCGTTGCTAAGGCAACACAATGAAA TTGGAAATGGAAAATGCTATGCAACATAATGGTAATGAACTTGTTTTTCCAGTTATAATTTAGGATGATG TATATCCTGTTTTCTTCTTGTCTCCGCTTTGGCTATTGAAGTGGGACTTTTGTTGTACAAGGTAAAGTAA TCGTAGAGAACTCGATTCAACGTCTAGATTATTCTATTAATACAGAGCCTGTAAATACATTTTTTTTTCT CCTTTTTTTTTTTTTTTTTTTGTTTGACTTGGTCTCAGATTGTTGTGTTTTACCATGGATTAGGAAGGAA GAAGTCATTCTCTTTATAGTACTGGGAATCTTTTTGTAAGGGATGGAGAGTAAAGGAGAAGGGAGCAGGC AGTTGCAGCAGACAACGGCTCAGGTCACCATCAGCTGCTCTTCATAAGGAAGCTACAGTTTTGCTGCTGG GAAGAGCTGCCACAGCCTTAAAGGAATAGTAACACCAAAATATTGTAGTGTTTTAAAGTAATGCAAATAT AATGTACTGTTGCCCTACACTGGTAAAACTGGTGTGTGTTATATAAACAAGCTACTGTGTAGCCATTAGT GTGTGCGGGTCGGACTTTTCCCAAGCCCGACTTCTATAGACCCGACCTGCCGATGATGAAACAAAAGGGG AGGGGTGAGAGGTCAACGTCTATAAAAACTCAACACGGAAACCGGCATTTGCGACCCGGAAAGGAGCGTC TGAGGTCGGCCTGACGCGTGGGTATCTGGTCGGCCCACACATCACTAGTAGCCATGGGGGCAGCCATTGA AAGCTGAAAAAGGAGAAAAAGCACAGGATACACAGCAGAAAACAGTTAAGCTCTGTAGTCTTACAATGGG ATTGTTCACAACTTATCTGTTATCTACTGTGTTCCCTGTGTTTGAATGACTACACAGCACTACATTATAT TGTCATTCTATTAAAACACTTGCATTTTTTGGTGTTACTGTTCCAATAAGGGTAATGTTAGCACCCATGC GATTTCTAGCTCAAGGATGGGTGCTAGAAACGACCCCTGACCTTAGGGGACATGCACATACGTCACAGTA GTTTTTTATGGTGGTCTATGCAGGATTACCACGTAGGCATCAATAGCTTCACCTGCCATTGCTTTACAAG TAATATGATACTTCATCTGAGGGTTTGCTGTTCTACAACTAATTCCCTGCCAAAGATTTCAGCTGGCATA AAGGGTAGCGTTGTGTTATGGCTGGGTCTTGGGTAACCTCCAGCCCTGGTTTGATTGAATAGTGGTTGAG TTGAGGGAGTGGTTTTGAGGGTTGTCATGGCAAGGTTTTGATTGGTGCAACCATACAGCAGGATTGTTCA ATAGTACGTCCCATTAGCTTCAAGGTGCTCTCTGAGTTTATACAAATAAATTGCGCCAAATAACCTGCTG CATTTAACTGAATTAACTCATCTCTAGCCTATCAGGGCCTTTTCATTTCTAGCTGAATATGTTCACATCC AATAAAGCATCTTCCTTTCACACATAACCTTCCATGTCATTCTCTGTGCTGGGTTTGCTGGCTGAGGATT GCAGTTTATTTATGGGAGCAGAAGCAACTCCCTGTACTCCTAGCATAGTGCTGAAACACCAGTGCAATCG TTCCATGCATTTAGTTTCCTTCTCCTAATTCTATATGAATTGACAACCTCTTTCTTTCTGTTTATTGTGA TAAATGCAAACTGTCATCCTACCGTTAAGGCGGATAATTTGGTATTTATACATGGGAATTTCGATTTTTC GAGCTTTCCACGGTCCACAGGCAGTGTCGTCGACTTTACATTGTTTATACTATTGAAATCATTTGCTGTC TGCTTTGTAAGTTGCAGTTCTTCAATGGGGATCAGTCTGTTTCTTTAAATGGAGAAGATTATTTCCAGTA TAAAGGGCGGGTACATACCAGCAATATATACATGTGGTGGTTGGTAAAGCAGAATTTTTTTTTGTTTTTT TTTTCTTTGTCGTCATTTTTGTAAGTAGACAAGAGCATGTTACCCCATGTGTGAGTCTGTAGCGTTTCTC CATGTCGGGGGGAGATGCGGGTGGAGTTAGTGACACCTCTGCTTGACACAAGGCTTGGGTGGGGAAGGGG GGGCGTAATGCAGATTTACTATCTCTGGGAACATTATAACAGTGCCTCGACCTTTATTAACACACTGGCA ATAACAAATACACCTTTAAATAAAAGCTGTTTTATAATGTTTTGTTTTAATGAATTGATGTAATAATGTT GGAAACCATTTTAAAGGCAAGTTTCATTTCCCCCCCCCCTTTTTGTACAGAGAAAACAAATATTGTAGTT TATAACTCATTTGTAAAATCAATTACATTTTCATTTTTTAATAAAGTGTCTAAGAGTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds