Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041584343.1 PREDICTED: Xenopus laevis protocadherin 17 S homeolog (pcdh17.S), transcript variant X3, mRNA GATTGATTCTGCCTTTTTTTATCTTCAAAACTGAATGAAAATACATATTTTGCATCTCATTTGGAAGAAT AGCAGGGCTCTGAAATCCAGATGTAGCGTGCATAATACTAATTGCCTGGAAAGGAAGACGTGGGAGATGT TTAGTAAGTGAACTGTGTTTTCCTTGTATATGAACTTAGTGGATGCTGGCTTTGTTTGAAAACGCTGTCA TTTAGTGATGCTCAAGGAGACAAGAATATAGAATCTAGTGACATTTTTTATAATTTAACATGTGCTTGCC ATTTGGATCTTCAAACTCATGTAGTCAGTTCTTGAAATGTGCTCTCTTTAAGACTTTTTTGTAGGGACTG ATTTCATGCAGACATTGTACAAAACAACAACTAGTCTTAAATCAGACAACCATTTTATATTTGGATTCTC CAAAGCTTACACGGTGTGCTTTGTTTTGTTTTTTTTCAATCAAATGCCTACTGAAGAATATAGAGAGGAA ATGTTAAGAAGGCTATGTTTGGCATCAATAAAAGAGGATCATTTAACAAAATGAAGCAAAGAAAGCAGCA ACTGTTCTCTCTTCGCCAGAATTAATGCCCCCCCCCCCCCCCTTTCCATATTCTGTGCATAGAACCATTG GTCTGCCTGTTGATTTGTCTCAGAAAGAAAACTGGAATTTAACTGAATACAATTATTAGTTGTAAGCTGA TGTGGCAACTGCCCTTGCAGAAAAAAAGCCCAAGTGTGAAATGACTAAATCAAAGCTGTGATCGTAATAC CTCTCAACTGATGATAAAGTTTGATGGTTCCTCGCATTTGGATTTTTTCCAGACTCTGTAAATTCCTGCA TTATTTAATATTCATGAATTTCTACTTGTAAATAGAGATAATATGAAGCAAAATAAAACTGTCAGTTTCT GGTGAAGACAGCTGCCAAACATTCTACATTAGATTTGTAAATGCAGACACTATTTTCAAAGAGCATCACT TGTTTCTTCCTCTGGATGTGCTGAAAAGCTTTTTTTCTCAGTTAAATTATGGACACAGTCAACAGTCTCT CCCACCCTCCTGTATTACTTATATTGCTGATGGACCTAGATTTCATACTGTTTACAAACTGCCTCTGAAT TTAAAATGCTGACTGCAGTCTGTCTGATCTTCGGAGAAGATAATTATCATCTGTTTAAACAATAAGAGAG AGGAAAATATGAAATCTTCAAAAACCGAAGTCTATCCCATGCAACTATCATATCTATCTTTCTACATTTG CCTCCTGCATTCTCTTCTGCTTCATCTTAAATAAAACTACAAACCTTTGGTGGGGTAGCACAGTATATAT CCACTCTCTGGGATGTACCTTCTTATGTGTATATTCTTCTCCCTTGGGGGTCTGGGGCAAGCATTAAAAA TGTTAAATTATTCAATTTCAGAAGAGAGAGGGTCAAGGATTGTAATTGGCAATATCAATATAGATGCAGA ACTTGAGTTGCCGAGAATGAGCTATTTTAAAGTTTTGGAGAATTCTGCTCCTAACTTAATTGATGTTGAT CAGAATAGTGGGTTGTTGTACACCAAACAACGTATTGATCGGGATACCATTTGCTGGAAAAATACAAAGT GTTTGCTGTCTCTAGAAGTTTTTGTTAATGATAAAGAAATATGCATGATTAAAGTGGAGATCCTGGACAT AAATGATAACTCACCCTATTTTTCCACTGAACAAATTGATCTTGAGATTTCAGAAAATGCATCTCCTGGG ACTAGATTTCCTTTGTCAACAGCACAGGATCCAGATTTAGGAGATAACAGTTTGCAGACATATATCATGA AGCGAGCTGATACTAACTTGTTTTCTTTGGACATAAAATCTCGTGGTGATGGTACAAAAATACCTGAGTT AGTTATCCAGAAATCTTTAGACAGAGAGGAACAATCTCACCACAAACTAATCCTAGCTGCCCTGGATGGA GGTAAACCTCCAATGTCAGCCACTCTGCAAATAAATGTAAAAGTTATTGATTCCAATGACAATAGCCCAG TTTTTGAAGCTAAATCTTACACTGTTGAAATCCCTGAAAATTCCCCACTGGGCAAGGTTGTAATTGATCT GAATGCAACAGATTTAGATGAAGGCTCTAATGGAGATATTTTGTATTCGTTTAGTGGATATGCATCTGAC AGGGTCTGGGAATTGTTTTCAATTGAACCTAAAACTGGATTAATACAAGTGAAGAGTAATTTAGATTATG AAGAAATCCGCCTCATTGAGATTGATGTGCAGGCCCAAGATCAAGGACCCAACTCTATACCTGTGCACTG CAAAGTGACTGTGAAAATTACTGATATAAATGATAATGTTCCATCTATAAACTTTGTATCAGTCCGCCAG GGAGAAATTAGTGAGGCTTCACCTCCTGATACAGTTATTGCACTGGTTCGGGTTACTGATAAGGATTCTG GAAAAAATGGTCAACTTCATTGCTGGGTTCAGGGCAATGTCCCTTTCAAGCTAGAAGAGAATTATGACAA TTTCTATACTGTTCTAACAGATAGACCCCTTGATCGGGAAATGCAGGATGAGTATAATGTTACTATAATT GCAAGGGACCATGGCAATCCACCATTAAATTCTACAAAATCTTTTATTGTCAAGATCTTAGATGCTAATG ACAACCCCCCACATTTCTCTAAACCTTTGTATATATTGCAGGTTTCTGCAAATAACATTCCAGGAGAATA TCTTGGTTCGGTCCTAGCACAAGATCCAGATTTAGGGCAAAATGGCACTGTTTCTTACTCAATCCTGCCA TCCTATATTGATGGTGTTTCAATCTACACTTATGTATCTGTCAATCCAATCAATGGTGCAATCTATGCTC TAAGGACTTATTACTATGAACTGACAAAATATTTTGAATTCACAGTGCTTGCTCAAGACTTAGGCTCTCC AGTTTTAGAAAGCAATGCTACAGTAAGAGTGTCAATACTGGATGTCAATAATAATGCCCCAGTCATTATT TTACCTAACTTACAGAATGATACAGCTGAAATTTTTGTTCCCAGGAACATAGGAATAGGATATATTGTAA GCACTGTTAGAGCAATGGATATTGATTTTGGAGAAAGTGGTCGACTGACTTATGAAATTATACATGGTAA TGAAGAGCATCTCTTTGAAATTGATTCAGTAACAGGAGATATTAAGCTTCTCCATCCTTATTGGCAAGAA GTTGCTCCAGTATTAGAGCTAATAGTCAGGGTGACAGATAATGGTAAACCATCACTTTCAACTGTGGCAA AAATCATCCTTAAATCAAATACAGTTTCTTTCCCTGAAGGAGAAACACAAATAACTGGAGAACAGAGGGA CTGGGATATATATTTACCTGTAATTGTAACATTAAGTGCTATTTCTGTAATACTGTTTGCTGCCATGGTG ACCATAGTTATAAAGTGTAAGAAGGAAAATAAAGATGTCAGGCCTTACAAAGGCAGAATAGCAGATTCTA TTCAACCTCGATTCATGAAGACAAAAAATAAAAAAATAAACAAGAATGACATTATGTTGGTACAGAGTGA AGTAGAAGAGGGAAATGCCATGAATGTTGTGAGTAGTCCATCCCTTGCTACATCTCCAATGTATTTTGAT TATCAAAGCAGTTTGCCTCTGAGCTCTTCCCATTCTGAGGTGCTGTACCTGAAGCCTACATCCAACCTTT TGACTTCTTCACAAGGAAATATAGGATGTCACAGTCTTTCTGAACCAGTTAGAAACACAACAGAGAATAA TTCTTCTTGGACTTCCATATCTCAGACAGACAATTTCTCCACAGAGCCCAATTACATGGGCAGCAGACAG CAGTTTGTTCAAAGTAGCTCAACTTTTAAAGACCCAGAAAGGGCAAGCCTGCGAGACAGTGGTCATGGGG ATAGTGATCAAGCTGACAGTGATCAGGACACTAATAAAGGTTCCTGCTGTGACATGTCTGTTAGAGAAGC ACTTAAAATGAAAACAACCACAACAAAATGCCAACCAATGGATCAAGATCCCTGCTGTAAAAAAATTGAT CGGTGTAATACAAAGTCAGTATGCAAAACTGTGTGCACAGAGCAAGAAGAGTGTGTAAATTGCACTGATG AATGCAGAGTCCTTGGACATTCAGACAGGTGTTGGATGCCACAGTTCCCTGCTGCTAACCAAGTGGAAAA TGCTGATTATCGCACAAATCTCTTTGTTCCTACTGCTGAAGCTCATGTTGAAACTGAGACTTATGAAACT GTGAATCCCACTGGGAAAAAGACATTTTGTACATTTGGAAAAGACAAAAGAGAGCACACCATTCTCATTG CCAATGTAAAACCATATTTAAAAGCCAAGCGTGCCCTGAGTCCTCTGCTACAAGAGGGTCCCTCTGCATC AAGCAGCCCTACCAAGACATGTATTGAGCCTTGTGCCACAACTAAAGGACCATTAAATGGCTGTGAAATA AAATCAGGAGTATTGGCAGACACATCCAATCAGTATCTATCTACTGAAAGCCAGTACCTGTCACCAAGTA AACAGACAAAAGACCCCCAATACATTGCCTCAGATCCAATGGGTTGCGTATTTGCAGATGTGCGTTCTAG AGTGAGCCGAAATACAAGTGAAATGGACGCTGTTTTAGAGCAACTGGAGCATTCAAACCGTGATCTGGGT CGAGAATCAGTAGATGCTGATGAAGTAGTGAGAGAAATTGACAAGCTCTTACAAGACTGTCGAGGAAGTG AACCTGTGACTGTAAGAAAGTAGATAGCAAAGATGGGCTATTGTGTTTTTTGCCTTTTCCTAGTAACATA CAGTTACAGCACATTTGCAAGAGAGGTAACACTGTAATATTGCTTATTGGCTGTAAGTGAAGAGTTAAAG TGCCCCTAAATCTTTTTCACTGATTTGTCATTTTCTCAGACAAATACTGGCTTTATTTTGATTAAATCTA CAGTTGGACAAAGTCAATGAAAAACTCTCTGTGGTTAAGTTCGACAATCTGATACATACGGGAAGAGGAC CAGAACTCCACCTGGAATTCATCGACTTCTTCAAGTCGTTGATGCTGACTTTTTTGTCTTTTGGTGTAAA ACAACCCATTGATTAACAGGGTTAACTAATTTATGTGTGGATTTTAAGCAAGCATCATTAGCTTCTAATT AAAGTCCTAACTAATTTTTCTGTAGTCCTAGCTGCACCAAACGTCACAGCTATTCGTGGTAATCATTTCT ATAGAAAGAACAACATTCCAAAACATTTCAGAAACAATGTCTGCCATTGACAGCATTTCCATGACACATA GTTATATAGAAAAGTATATGGTAAGTCGTGTCCTGCACATAAGCTATTTCACTTTATGTAAAATTAAAAA GTGTTGATAAACAAGAATTTTAGTGTCCTGCACAAATAAATACAGATAAATTAAGTAATTATATTATTAC CCTACAATATAAAGTGGTTCTAAAACTTTTTGGCATGTAAGGGTAAACATTAAACTCAAAATTTTTTAAC CTCAATTATGTTTTCTATTTGTTGGTTGGACACTAAAATTGCTCAGGAAGTGAAACTGTCATTTAAGCAA ATTTCACATGACCATTTCTATGTTCAAATGTGAGAAGATTTAACTGTTTACATCAAATTACATATTTTTA TGATTTATTTGCGATTTTAGTGCATATGAGCCAAATTGTTCAGTGTATAAGAGCTATATTGTGTATTTTA TTAAATTAATATATAGTTGTGTTGCAAAAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
