Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041561646.1 PREDICTED: Xenopus laevis sterol regulatory element binding transcription factor 2 S homeolog (srebf2.S), transcript variant X1, mRNA TAGAGTGCGAAGTTGCGCCAGAGTCTATCTCCTTGGCGAAATTACGTCAGCGTTAGCCACTTCGCCCTTT AGTAATTTCCCACATTGTCGGCAGCCGTCAAATCTTCTAACCTGTCCGATCGACCAAACGACCGATCTCC AGCGGACGAAAAATGTCAGGACTCTCCGCACACGGTCCGAAAATCGTACGAATCAGATCTTTGCGTCTAT GGCCAGCTTTAACTTTACTGAAGTTAAAATGCTGCAACAAATGCTCCTTAGTTTGCTCATTAGCTTGATA ACCAAATTCTGTTTTCTTCGAAAATTCAGAGAAACTTGTTCAAGACACGATATAGTGCTGCACTACTTTT GGATGCTTTCAGGCACTGGCTGGCTGCTACTGTAAAGAGAGTTTTTAAACAACTGTCAGCCTCCATACTC TACCAATCACATATACAAAAACTTCAGGTGATTTAGAGATAAGTTGGACATACCACTAGCGATTTCAATT GCTGTCAGTGGAGAGGCATATTCGGGAGATTTTGTCATCCGAGGGAAAAATGTTTTCCCCTTCCCACCCC TAATTAGCATATGCAAATGAGGATTCGGATTCAGTTCGGCCAAATCCAAAATAGTGGATTCGGTGCATCC CTAAACATAACTTCTCGAAGTTGATCTAGCTCAATAGTGCGGAGCATTAGTATTGCCTGCTACTGCAACA AAACACTGACAGCACTGATTGTAAGCAGAAGGGGTTAAATGTCATGGCTTGGCTGAGCCTCACAATGGCC TAGGCCAAGACAGGGAGTGAAGAGGAAAAAAAAAAGGTTTTGCCAGTGTCTCATATTTCACTGCTCAGAG AATCACACAATACAGGGAGGGGAGGGGGTGAGCTACTACACATTCCACACACACAGGCTGCTGGAACACA GGAACATAACAGAATGTAGACACACACAGATCATAAACGCACAATAGGCACATGTACCACACAATCTACT AAGAAAACTGTTGGAATTGAAAAGGGCAATGCTGCAGCTTTAGTAACCATACAAAGATCTACCACAGAAC TCACCCCTCCCCCCTGACTCTCATAAACTGTATGCAGTGGCAGTGCAGTAAGTTACAGGACAGCTGGGGA CAACCACACAGTCACAGTACAAATGGCCGCTTCTGCAAAAAGAACGTCTGCTGCCTAGTCCACTATTAAC TCCTGTATCTCCCCAGTCCCCACAAAAAGCACCCTTCCCACACTTACGGGAACTGAAGTACTCACAAACA CCCCCTCCACACTCTTCCACAAACAACACAACCACACACAGCAGCAGACAAAGTCGCAGAGTGAGCTGAC CCTGCCCTCATTGAATTCACCCGTAGGCGTGGCCCCAAATATATCAGGCAAGGCCGGCCTCCTATGCAAA TATAAGATCCCCTGATCACTGACGTAGTATCACACCACAGCTTGCCAAGCTCTCTCATTCGTCCGAGGAG TCTGGTCTCATTGACAACAAAACATCCAGCACGCGTTTGTACAAGGTAAAGAGGCGGGACTTTTCGCTTT ACTGGGGCGGCTGAGTTGTGTCAGAGTGGGGGAGGGGTGGTATGCGTTTCACGCCTCTTTCAGGATTCAT TCCAGGCTTCTAACCATGGCACTGAAACGAGTTTTGGAAGACAAGATGTTGACGTCACGTAGTATGGAGG GAGGTGTAGCCCAAACATGGTGTCAGGTTTGCCACTGACAGGTTCGTGAGCTCCAGGGATAGGGACCAAG AACCGGCTCCTCTTGGGAGCGCTAGGATTGTCACAGGCCGGATGGTCTTATGGATACATCGGAACTAAAC ATGGAGAACATGGAGACGTTGACAGAACTTGGAGATGAACTCACCCTGGGGGATATTGACGAAATGCTGC AGTTTGTCAGTAATCAGGTGGGTGAGTTTCCGGACCTATTTGAGGAACAGCTGTGCCAGAGTTATCAAGG AAATAATGCAGTGGACACAGCCTTACCCAAAGCTTATAACCAGGCTATACAGCAGCCATATACTACTCCA ACACCTCAGCCTCAGATGTTGCCTGTAAAAGCAGCCCCACAAGCCACACCCCAGAGAAGTGCTCCTCTTC TCCAGCCCAGACCAGTGGTTCAGACTTCTCCTCATCCTAAGCTGCAACAACAGACACTGATGCTCACCCC TAATTTCAGCACCGCACCACAGACCCGAATAATACAGCAGCCACTTATCTATCAGAATGCTGGTACTGCA AGTTTTCAGGTGCTTCAACCCTCAGTTCAGGGTCTAATGACAACACAGCAGATGCAGCCAGTCACAATTC AGCAGCAAGTACAGACCGTTCAGGCCCAACGAGTCCTGACTCAAGCAGCTAATGGTACAATCCAAACACT GACTCCAGCTACTGTTCAGACAGTTACCCCTCAGGTCCAACAAGTTCCTGTGCTTGTGCAGCCGCAGATA ATCAAAACAGAGTCTTTGGTGCTTACTGCAGTGAAAGCAGATGGCAGCCCTGTGATGACCACTGTGCAGA ATCCAGCAATAACAACACTTACTGCTCCTTTACAGACAACATCTCTCCAAACCCTTATGGGCAGCAATGG GGCTTTTCTTACCACAATGCCAGTAATGATGGGACAAGAAAGAATGGCCATAGAACAAGTACCAGGAAGT CTTAAGCAACCAGAGGTACCCAAGGAAGGCGAGAGGAGAACAACACACAACATAATAGAGAAAAGGTATC GTTCATCTATCAACGACAAAATTATCGAGCTGAAGGATTTGGTCATGGGCACAGATGCTAAGATGCACAA ATCAGGAATCCTGAAGAAGGCCATTGATTATATAAAATACTTGCAACAAGTCAACCAGAAACTGCGCCAG GAAAACATGGCTTTAAAACTAGCCAATCAGAAAAACAAATACTTAAAAGGTATTGATCTTAGCAGTCTGG TGGATACAAGTATTGGAATGAGAATGGATGAATTCAATCAAAACATCTTGATGATGTCTCCTCCAGCATC TGATTCTGGTTCCCCGGCTGTGTTCTCTCCATATTCTGTGGATTCTGAACCAGGGAGCCCTTTGTTAGAT GATGAAAAGGTAAAAGATGAACCGGACTCCCCCACAGGACTGGGTATGATGGACCGTTCACGGATGCTTC TTTGCACCATGACATTCCTGTGCTTATCCTTCAACCCCCTGACATCTTTGTTACACTCTGAAAGTGGCCA GTACTCTGAGAGAGCAGTGCAACATGGAACAGGGAGAAACATGCTTGGTATTGAAATGTCAGGTTTTTAT GGCAGCTGGTTTGATTGGCTTATACCCACCTTAATCCTTTGGCTTGTTAATGGAGTGATTGTTCTCAGCG TCTTCATGAAATTACTCATCCATGGAGAGCCTGTGACCCGTCTACATTCCCGCTCATCTGTCAAATTCTG GAGACATCGCAAGCAGGCAGATTTGGATCTTGCTAAGGGGGATTTTAGCGCAGCAGCCTTGAACTTTCAG ACATGCTTGTGTGTTTTGGGACGCTCATTACCTGCCTCGCGGTTTGATCTAGCATGCAGCCTTTCCTGGA ACATCATTCGGTGTAGCCTGCAAAAGATCAGCCTTGTCCGCTGGCTGCTAAAACACTCCCCTGGGTACTG CAAAAAAGCAGAGTTTCAAGATGAAGCAACAACCAGTGCAAGGGATGCCGCCCTTGTATACCACAAACTG CACCAACTGCATCTCACAGGGAAGCTGCCATCTAATTGGAACTGTTCAGGTCTCAACCTTGCCCTTTGTG CCGTAAATCTGGCCGAATGTGCTGGCAACAAGATCTCACCAACTTTACTTTCAGAAATCCACCTCACAAC AGCCATTCAAATGAAAACCAGTTTCCCAACTAGATTCCGCTTTCTCACTGCATATTTCCTTGGATGTGCA CAAAATGCTTCTTCTGAGGAAACCATTCCTGACCCTATGCAATGGCTTGCACACCCTTTGGGGAAATACT TTTTCATCTATTCTAACTGGGCACTGAAGAGTGCAGCTAAAGACTCTCTTTACACCTCTTCAAGAAACCC AGCCGATCCAGTTACACAGATTCATCGTGCTTTTTGCGAGTCTTTGTTGGAAAAAGCAATGTACACCATG GCAAAACCAGAAACCAGTAAAGCAGCCTCTGAAGAAGAGAGTTGTGAGTTTTCCAGAGCTCAAGAATATT TGAAACTTCTAAGTGGGCTTGCAGATTCCGTGGGGAACATTGCCTCTCTTCCCCTCAGTGGATCTTCTCC CATGTCCTCGGCAGATCCTATCTGTCGCTGGTGGTACTCTGTATCTTCCATGGCTATTGGCTGGTTACAA GGGGATGATTCTGTGGTGAAATCACACTTTGCAGAAGTAGAAAGAATTCCTAAGCTCCTTGACTCTGATA ACCCTCTGGTGAAAGCAGTGATCCATGTGTGCCGAGCCATGCAAGCAGCTGTACTTGGTAAATGTGATGG CCAGCAGAGCTCATTCTATCACTGTGAGAAAGCCAGCACATTCTTGTGGAACAGTCTGAATATGAGCAGC ACCGGCAACACAAATCTCAACAAGGTGGTGCAACTTTTAATTTGCGACCTTCTGCTTTCATTGCGCACTT CCTTATGGCAGAAACAGTCCTCCAGTCCAGCAGCTGGAGAATCTATTCATGCACCCACTTCTGTCCTAAC AGGATTCCAGCGTGATCTCAGCAGTCTGCGTCGTTTGTCTTTCATCTTTAAACCTGCCCACTGCAAGCTC TTCCTCCATGAAGCCACAGTACGATTGATGGCTGGTGCAAGTCCAACCCGTACACATCAGCTTCTGCAAC ATAGCTTGCAAAAACGCACAGCACTTGCAAATAAACAAGGTGACCTGGACTCATTACCTGGGCAACGGGA GAGAGCTACAGCTATTCTTCTGGCCTGTCGACACCTACCACTTTCATTCCTATCATCCCCTGGGCAGAGA GCAGTCATGCTTGCCGAAGCTGCCCGAACTCTTGAGAAAGTGGGCGACCGTCGCTCTTACCACGATTGTC AGCAAATGATGGTAAAGCTGAGTGGCGGTACTGCTATGGCAGCCTCCTGAAAAGGACACACACCTGGACC TGTCCTAAAAGACATCAGCTTTTTTTCCAGCTGTCTGGGTTGAACAAATCCAATGTTTTAAGAGGTTTAA ATCCCAGAGACTTCATGGCTCAATGGGGTTTTTCAATGATGTCAACTGTACAGTCTCAATAAGGGATCTC CTCCAGGATAGTAAAGAGAAATTGAAGCAGACCATGCTTTGCTTTGAAATATACATTTTCTGAGCATCAC ACCTTGATACTATTCAAGTCTCTTTTTTTTTTTATATAGTTCACCTCGTTCTCAGGGTACATGTAATATA GTGCTTTTTTTTTTAGCCCTTGCTTCTGCAGGCTCTTAGCAATGGGATTACTAAAGTAATATTTCTTTCC CATTTGCTACTGCTACATTTAAGGTATTTTCAACTGTCACACTGATATGTCTTACATCAAAGCTCTACTC ACACATAACATGTAGTTGTAGTATACCGATCCCTCAGTTAACATGTACCCAAGCTAGCAGAATGAACTTA AGATCAGGACATAAAACACCTGTCTTTCTCTGCCAAAGAGCCTTACATTTAAAATATCCAGATCTCCTAT TTAACACCAACTTATTTCACTTCCAGACCTAACGTTATGCACAGATCTTGCCTTCCTCTTCCTTGTTTAT GAGTCTGGTGCAGTTGGTGTAGAGGCTCAAGTATTAAATGCTGAGCATGTTACTATTTCCTGTTCAAATA CCATAAGGGGAAAAAAAAACATATTCCTTGAGAAAATAAAACTGCTTTGTAAAAAAGATAAAAAATAGAC GCTGAAACCCTGGATTGTTATTTCAAATAATTTATATCATTCCTGCTCAGCCCATTCGCTACAGATGGGC TGGTTAACCCTTTAAGTGCCAGGGCACTGGGATCAGTATGTACTTCATTAATAGACATGTTGAATGGCAT AGATCAAAGCATAGTCTTGTAATGTAAAATTATGGAGTTGGCAGTCCCTGACAGCTCATACCATAGAATG TTTTTTTTTTTTTTTACAACAGTCAAGCGGTTAAAGAAACTGCTATGAAAGCTGCTTGTAAATGTTGACA CTATTCTGGTCCTGACTTTGTTGCTGCTCCTTTATGTTGGCACTATTCTATTCTGTCCTGGCTTTCTTGA GCCCTTTAAGGCACTCATCTAAAAAGCTAGTGGGAACGCTTGGATATGTGCCTTGTTCTGATATATAAAT ATATATATATATATATATATATATATATATATATATATATATATATATACTTCAGCTCTTAGTGCTTTAG TATTGAAATTGGAAATATTTTTCCCATGTAAAATGTGTTAATTTTTGGTATAGAAAAATGGATTAATATG GCAAAGCAGGCAGCAGTTTTGCTTGAGTAAAATCTCATTGAGTAATATTCCTTTAAATAAGAATGGTAAT GGTACATAATTGTTACTGATTTTAAAGAAAGGAGACTGCTGTATTTTAATGTAGTTAATTTAAAACATAA TAGCTTGTGTGTAAAGTTCCAAGATGCTTATTCACCTTCTGCTTTGGTTATGCTTTAATGGACCCCATAT ATTCCTTGGGAGCTATCTGGCTCATTACTTTCTGCAACGAGTTTGGAGAGTACTTGGCTCACTTGCATCA TCACTTGTATGTAAATAACTCTTTCATGTATTTATTTTTTTAAATAAATGTACATGATACACCCTATTCA CACAATTGGAGATTTCCAACCTACCTGTCTCAGAATGAAGATTTTAGAAACTATCTCGAACAAAATTGGG CAAATTATATTGACGATAATTTAACACACTGGGGATAATAAAAACTTCTTTGGGCCACTGCTAAACCAGT GTTACGGGGTCACATTATATCATATCTGATTAAGCGGAAAAAGTAATTTGCTGAAAGATATCAATTATTA CAAAAGAAGCTCACACAGGCATGCAAACATTTTAAATTCACTAACTCACCGACGGACAAAAAGAAATACA CGATACATCTGTAGTATTAGGGTCTTCAAAGGTAAATGATTACTCACCACAATAGGGAAGTGGCCCTCAG CAAGGGAGTGGACAAACCGAAAAACCAATTAGGAGCAGGCACTCAAAGAAGGCATACTTCCACCAGGTCA ATCGTTCAAAGTAAAGAAAGTTTGTGTCCACAGCCTTACGCGTTTCGTGTCATCAACACTTAATCATACA CGGACACAAAGGCACTTTTCGACACTTTATTGACAGAGCAAATGCAACACAAACTGAGTCATACAGCAAA TAGATTTTATCGATGGGGGAACAAATCAGGGAAATTATTAGCAAATATAGTTAAAAGACAACAGTGAAAT ACAATCATTCAGAAACTGAAAACACCCATGGGATGGGCTCGGGACACACAAGACATAACTAAAATAATGG CAGAATATTTTAAAAACCTTTACCAATAGTCGTCTGATGCTCCAGAGAACGGTCTTAAATTTCTGCAAGA TGCCCATTTGAAATAAATTGACAGTCCAAGATAGGCTGCTGGGCTGCTTAGGGATCGTCATAAATTATCA AAACAGCACAAGTCAAATAATATCTGCCAGACGCTGATACAGCAAGGCTGATTAATAATCAGAATATACA AACTGCACTGGGTCCTGTGTTGTCATGTAATCTAATGTGAATTTTATAGTTTTTGTATTGTTTAATACAA ACTTTCTCCAACTCTGCAGAACCAGTGGCAGCAGCAAAATAATATTCCAAATAGAATCCCAGTTTATCTG TTAAAATCTGGCTCCATGATCTTTGTCCCTGGAGCTGGAGTTGGAAACATTAAAGGGGATTTAAAGGCAA AAATAAAATCCAATACAAATCTACACAGTCGCCGACTGCTTTACACGGAAACAAAGCTGCTTGAGTTCTG AAAGGCTGGAAAGTAAGGCGAGGGCTCCCCCTGCTGTTCACAAGTATGATTGTTTCCCTGCTCAGCAGTT ATGGACCGTCTGACAATTCCTATCCACAGCAGTAAATGAAGGGAGAATTTCACTTCATACAGTCAGGTTT CTTATAAAAACAGTACACACTTTTTAATATTGGAGATAGATTTCTTTTTCATTAAAGAAAGTAAAAATGG TATCTTATTTTTTTGCCTTTACATGCCCTTTAAATCAGAATTTACTAAGGTTAGCTATACTAACTTGAAA CGTGGTTTGTTCTAGATAATTAGCTATGAATACATTGACAACGGAATTTTCTTTTATGTACCTCCAAATT TCCTTTGTTGTTATTTATTTCATGTTGTTTGAAAACTAAATAAACACATTTGTTAAAAAAATAAAATGGA CATGATACTATGCCTCAGCAAGGAGGGGTAGTACTGCTGTTTGACCCTGTGAATAAGAATTGTATATTCC TTATAAACACAAGTTGGAGATATGTGGCATATTTTGTTTTTATTTTTTTTAAAAAAATTCTAGAATAAAC TGACATTTTGTAAGATGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
