Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
???banner.login???
???banner.register???
Contact Us
Cite Xenbase
Search
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
Phenotypes
Genes
Xenbase With Google
People
Labs
Organizations
Paper Authors
Paper Titles
Xenbase Accession
Clones
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
GEO Data Sets
BLAST
Xenopus
mRNA
Xenopus
protein
X. laevis
10.1
(J-Strain)
X. laevis
9.2
(J-Strain)
X. tropicalis
10.0
(Nigerian)
X. tropicalis
9.1
(Nigerian)
Mitochondrial genomes
Other amphibian genomes
Genomes
Download
Xenopus
Genomes
X. laevis
v10.1
(J-Strain) on JBrowse
X. laevis
v9.2
(J-Strain) on JBrowse
X. tropicalis
v10.0
(Nigerian) on JBrowse
X. tropicalis
v9.1
(Nigerian) on JBrowse
Simple Synteny Search
JBrowse2 Tracks
JBrowse2 X. laevis v10.1 L vs S synteny
Xenbase UCSC Track Hub
Other amphibian genomes
on JBrowse
Expression
Expression Search
Anatomy Search
GEO Data @ Xenbase
RNA-Seq Visualization
miRNA Catalog
X. laevis
Protein Expression
Genes
Gene Search
Gene Search Tips
Gene Nomenclature
Gene Nomenclature FAQ
Phenotypes
Phenotype Search
Mutants
Disease Models
Disease Search
Xenopus
Phenotype Ontology (XPO)
Anatomy & Development
Anatomy Atlas
NF Development Stages (Classic)
NF Development Stages (Zahn Drawings)
Xenopus
Staging Landmarks Table
Development Stage Temperature Charts
Movies of
Xenopus
Embryos
Images of
Xenopus
Embryos
Images of adult
Xenopus
frogs
Cell Fate Maps
Xenopus
Anatomy Ontology (XAO)
Zahn Drawings
Reagents & Protocols
CRISPR & TALEN Support
???header.navigation.xenbaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
???header.navigation.searchORFeome???
Small Molecules Wiki
Protocols Wiki
Search Clones
Clone Libraries
Vectors
Obtain Frogs
Literature & Community
Search Papers
Find People
Find a Lab
Organizations
Job Postings
Xenopus
Community Groups
Meetings & Resources
Xenopus
White Paper
International
Xenopus
Board
Stock Center
Lines and Strains
Mutants
Transgenic Constructs
Clones
NXR
EXRC
NBRP
TEFOR
XLRRI
Download
Data Download
Gene Page Reports
Browse Download Site
Browse General Repository Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Xenopus laevis J-strain 10.1 Genome
Xenopus laevis J-strain 9.2 Genome
Xenopus laevis J-strain 9.1 Genome
Xenopus laevis J-strain 7.1 Genome
Xenopus laevis J-strain 6.0 Genome
Xenopus laevis outbred 1.0 Genome
Xenopus tropicalis 10.0 Genome
Xenopus tropicalis 9.1 Genome
Xenopus tropicalis 9.0 Genome
Xenopus tropicalis 8.0 Genome
Xenopus tropicalis 7.1 Genome
Xenopus tropicalis 4.1 Genome
-- mRNA --
Xenopus laevis and tropicalis mRNA
Xenopus laevis and tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis mRNA plus CDS
Xenopus laevis mRNA plus EST Clusters
Xenopus tropicalis mRNA plus EST Clusters
Xenopus laevis and tropicalis EST
-- Protein --
Xenopus laevis and tropicalis Protein
-->
Xenopus laevis Protein
Xenopus tropicalis protein
???blast.query???
>XM_041565147.1 PREDICTED: Xenopus laevis otoferlin S homeolog (otof.S), transcript variant X10, mRNA GGGAAGGGGCAGAGAGTGGAGCTCAATGAGTGACAGAGGGGGGAGGAGATTAACACAGAGCGGCCCCCTC CTCAATAGCAGAGACTAGAGCAGCTCATCAGTCTCACCCCGAGGATTCGATTGTGAGCTCAGCGCCCCAG CATGGCCCTCATTGTGCATCTCAGGACTGTCACTGATCTGCGGGGGAGAGGGGACAGAATCGCCAAAGTC ACGTTCAGAGGGCTGTCGTTCTACACTCGGGTGCTGGAGAACTGTGAGGATGAGGCCCGCTTTGATGAGA CATTCCGGTGGCCAATCGCCAGTAACATCGACGGAAACGAAATGTTGGAGATCCAAGTGTTTAACTACAG CAAAGTCTTCACTAACAGGCTGATCGGGACATTCCGGATGGTTCTGCAGCAGGTGGTGGAGGAGGCGCAG CTGGAAGTGACCGACACTCTCATTGATGATAATAATTCTGCAATTCAGACGAGCGTCAGCATCGAGATCC AGTACCAGACCATGGACGGTTCTGTAGGCGCCTGGAATGATGGAGAATTTATGGACAACTCCAACCTGCA GAACGAGGGAGCCGGGAGTTTTCACTTTGAGACGGAAAGTCTATTGTCCGGCCAGAGTCAGAACTCAGCC GTGTCCCCCGGGAGATCACAGAGCTTGCACTCTACTGAGAGAGCCTTCAGGAGGGTTGGCAAAGGGGTAT TTTCAGCCATGAAGCTTGGAAAGATGCGCCCACCCAAGGACGAGAGCAGGAGGCAAGATGAACCTGCTGT TCTGGAGACAGAAGACTTGGATAGGAAAGCGATCAGATTGGCTGGAGGTCTGGACCCTGACACCATATCT CTTGCCTCCGTTACAGCCCTCACCACCAATGTGTCCAATAAAAGGGCCAAACCTGATATCAAAATGGAGC CAAGTGCTGGAAGGCCAATGGACTACCAAGTGAGCATCACAGTGGTAGAAGCCCGGCAGCTGGTGGGATT AAACATGGATCCGGTGGTGTGCGTAGAGGTGGGGGATGAGAAAAAATACACGTCCATGAAAGAATCCACC AACTGCCCCTACTACAATGAGTACTTTGTCTTCGATTTCCATGTGCCGCCGGACGTGATGTTTGACAAAA TAATCAAGTTGTCAGTGATCCATTCCAAGAATCTTCTCCGGAGCGGGACTTTGGTTGGCTCCTTTAAGCT GGACGTTGGCACTGTGTATACACAGCCTGAGCACCAGTTCTACCACAAGTGGGCGCTTCTCTCAGACCCT GATGACATCACGGCGGGGCTTAAAGGTTACCTGAAGTGCGACATCGCCGTGGTTGGGAAGGGGGACAACA TTAAGACCCCGCACAAAGCCAATGAGACGGATGAGGATGACATTGAAGGGAACTTGCTCCTCCCGGATGG AGTTCCCGCAGAACGCCAGTGGGCTCGGTTCTACGTCAAGATCTACCGTGCCGAAGGTTTGCCCAGGATG AACACAAGCATCATGGCCAACGTCAAGAAAGCTCTCATTGGAGAAAACAAGGACTTGGTGGACCCCTATG TGCAAATTTCCTTTGCTGGACAAAAGGGTAAGACCTCAGTGCAGAAGAGCAGCTATGAGCCCATGTGGAA TGAGCAGATCATTTTCACTGAGATGTTCCCTCCCCTGTGCAAGAGGATGAAGATACAGATCAGAGATTCA GACAAGGTCAACGATGTCGCCATCGGGACCCACTTTATCGACCTGAGGAAAATTTCCAACGAGGGAGACA AGGGTTTCCTTCCCACTCTTGGCCCAGCCTGGGTGAATATGTATGGCTCCACCCGGAACTACACACTCAT GGATGAGCATCAAGATCTGAACGAGGGGCTTGGAGAAGGCGTCTCTTTCCGTTCAAGGTTGTTGTTGAGT CTCGCTGTTGAGATATTAGATACAAGCAATCCAGAGCTCACCAGTTCCACAGATGTTCAAGTTGAAGGAG CTCAACCAGTGACGGAAAACTGCACAGGGAAAATGGAAGAGTTCTTCCTTTTTGGAGCTTTCCTGGAATC CACCATGATTGACCGGAAAATTGGGGACAAGCCAATTAACTTTGAGGTCACCATAGGCAACTATGGCAAT GAAATAGATGGAGTCTCCAGACCATTGAGGAAGAGGAAAGAAGGGGGCAATGGGGTCGAGGATGAGACAG AGCTCTTGCAGAATTCCAGTGATGATGAGGCCGATGAAGATGGAGAAATGTTATCAATCTCTTCAACACC CGCAATGAAGCCACTCATAACTGATAGGAACTACTTCCATCTGCCGTTCTTTGATAAGAAGCCCTGTATT TACATTAAGAGCTGGTGGCAGGACCAGCGGAGGAGGCTGTACAATGCCAACATTATGGACAAGATCGCAG ATAAGCTGGAGGAAGGGTTGAATGACGTCCATGAGATGATAAAGACGGAAAAGCCTTACCCTGAGCGCCG GCTCCGAGGGGTCCTAGAGGAACTTAGTAGCAGCTGTTTCCGATTTGTCACATTGGCCAACAAAGATCAG AACCAGAATGGACAGACTAAACTGGACAGGGAGAGACTGAAGTCCTGTATGCGGGAGCTGGAGAACATGG GGACACAAGCTAAGACCATGAGGTCCCAAGTGAAAAAGAACACAATTAAGGACAAACTGAAGCTGGTGCA GAATTTCCTCCAGAAGCTCCGTTTCCTGGCAGACGAGCCCCAGCACAGTATTCCTGACGTTTTCATCTGG ATGATGTCCAACAACAAGCGCATTGCATACGCTCGCATCCCATCCAAAGACATCCTCTACTCGATTGTAG ATGAGGAGACGGGAAAGGACTGTGGGAAAGTCAAGTGTGTCTTCCTTAAGCTGCCTGGCAAGAGAGGCTT TGGGCCCGCAGGTTGGACAGTACAAGCCAAGATGGAAGTCTACATGTGGTTGGGCCTTAGCAAGCAGCGC AGGGATTTCTTGTGTGGCCTTCCATGTGGATTTGAGGAGATAAAAGCAGCTAAAGGGCCTGGCCTGCAGT CCTTCCCACCCATCAGCCTTAGCTACACCAAAAAACAAGTGTTCCAGTTACGAGCCCACATGTACCAATC CCGGAGTCTTTTTGCCGCTGACAGCAGTGGGCTATCTGATCCCTTTGCCCGTGTCTTCTTCAACACTCAG AGTCAATGCACAGAGGTGCTGAATGAGACCCTTTGTCCCACTTGGGACCAGTTGTTGGTGTTTGACAATA TCGAGCTCTACGGAGAAGCTCATGAGATGCGAGATGATCCTCCCATCATTGTCATTGAAATTTATGATCA AGATACAGTAGGGAAGGCTGATTTCATGGGGAGAACGTTTGCCAAACCTGTTGTGAAAATGGCCGATGAG CGGTACTGCTCTCCTCGCTTTCCTCCACAATTGGAATACTACCAGATATATCGAGGGAACTCAACCGCAG GGGACCTCTTAGGAGCGTTCGAACTGCTCCAGATCGGACCAGGAGGCAAGTCTGACCTTCCACAGATTGA AGGACCAACAGACATGGACAGAGGACCCATCCTTCCAGTTCCTCTTGGAATCAGACCAGTGCTCAGCAAA TACAGAGTAGAGGTCCTTTTCTGGGGGCTGAGAGACCTGAAGAGAGTAAATCTAGCCCAGGTTGATAGAC CAAGGGTGGATATTGAGTGTGCCGGAAAGGGGGTCCAGTCTGCTCTCATACAGAACTACAAGAAGAATCC GAATTTCAGCACCTTGGTCAAATGGTTCGAAGTGGATCTCCCTGAGAACGAGTTACTGCACCCGCCACTA AATATCCGAGTTGTAGACTGCAGAGCCTTTGGCAGATACACTCTGGTTGGTTCCCATGCTGTCAGCTCCT TACGCAGGTTCATTTACCGGCCTCCAGATAAGAATTCCCAGCAGTGGAACACAGCAGGTGAAATAGTTAT CAACATGGAGCCGGAAGTGCCCGTCAAGAAGATGGAGACAATGGTGAAACTGGAATCTAACTCTGACGCG GTGGTTAAAGTAGACATGAGCGAGGAAGAAAAAGACAAGAAGAAGAAGAAGAAGAAAGGAGTCGAAGAGA TTGAGGAAGAGGAGCCAGATGAGAGCATGTTGGACTGGTGGTCCAAATACTTTGCTTCCATTGAAACTAT GAAAGAGCAACTGCACCAACAGGAAGCAGCAGCTGCAGAAGCCGAGGAGAAGGAAGAGATGGAGATCGCA GAGGGCAACAAGGGCCCCACCAAGAATAAGGAAAAGGTGAAAGCCCCCAAAGAAGACAAGAAAAACAAGA AGCAGCAGCAGCAACAAACCGAGCAGGCCGAGAAGAAGAACAAGCAAAAAATCGACGAGTTAAAGGTGTC CAATAAGGAGTTGGAGAATGACTATGATAACTTTGAGGACTGGCTCCATACGTTTAACTTGTTACGAGGG AAGATCGGCGATGATGATGATACTGTAAGCGAAGAAGAGAGAATTGTTGGGAGGTTTAAAGGTTCCATGT GTGTGTACAAAGTTCCTTTGCCAGAAGACGTCACAAAGGAAGCCGGATATGACCCAAACTTTGGCATGTT TCAGGGAATCCCTAACAACGATCCAATGAATGTGTTGGTCAGAGTTTATGTTGTGAGGGCCACTGATCTT CATCCAGCTGATATCAATGGAAAAGCGGATCCATATATTGTCATAAAACTAGGAAAGACAGAGATAAAAG ATAAGGAAAACTACATCTCCAAGCAGCTAAACCCCGTCTTTGGAAAGTCCTTTGATATTGAGGCCACTTT CCCGATGGAGTCCATGCTAACGGTTGCAATTTATGACTGGGATCTGGTGGGAACAGATGATCTAATCGGA GAAACCAAACTCGACCTGGAAAACCGTTACTACAGCAAGCACAGGGCGACTTGTGGTATCTCACAAACAT ATTCTATTCATGGGTACAACATGTGGAGGGACCCAATGAAGCCTACACAAATCTTATCCAAACTTTGCAA AGAAGGGAAGATTGATGGGCCCCATTATGGCCCCGGTGGAAGAGTGAAAGTCACAAATCGAGTATTCACA GGTCCCACAGAAATTGAAGATGAAAACGGTCAGAAGAAACAGACAGATGAACACCTTGCCCTCTCGGTCC TACAGCACTGGGAGGACATTCCTCGGGTTGGATGTAAGCTGGTCCCTGAGCACGTAGAAACGCGGCCTTT GTTAAACCCGGATAAACCTGGAATTGAGCAGGGCCGCATAGAAATGTGGGTAGACATGTTCCCAATGGAC ATGCCTGCGCCAGGTCCCGCCATAGATATATCTCCAAGGAAGCCAAAAAGATACGAGCTTAGAGTGATAA TATGGAATACAGATGAGGTAATCCTGGAAGATGATGATTACTTCACAGGAGAAAAATCTAGTGACATTTT TGTCAGGGGGTGGCTGAAAGGACAGCAGGAAGACAAACAAGACACGGATGTCCACTATCACTCCCTTACT GGGGAGGGGAACTTTAACTGGAGGTTCTTGTACCCTTTTGATTACCTTATGGCAGAGGAGAAGATTGTCA TTTCCAAGAAAGAGTCAATGTTCTCTTGGGATGAGACAGAGTACAAGATCCCGGCTCGTCTTACACTCCA AGTCTGGGATGCTGACCACTTTTCAGCAGATGACTTTCTTGGAGCCATAGAATTGGACTTGAATCGGTTT CCTCGTGGGGCAAAAACAGCAAAACAGTGTTCGATAGAAATGTCAGAACCAGATGTCGATCTACCAATGG TCTCAATCTTCAAACAAAAAAGGGTGAAGGGATGGTGGCCTTTCGTTGCCAGGAATGAAAATGATGAGAT GGAATTGACTGGTAAAGTGGAGGCAGAGCTTCACCTTCTCACAGCAGAGGAGGCAGAGAAGAGCCCAGCA GGGCTTGGGCGCAATGAGCCAGATCCCCTTGAAAAACCAAATCGACCCGACACCTCGTTCATCTGGTTCC TCAGCCCGCTTAAGTCCATCAAGTACCTCATCTGTAATCGCTACAAGTGGCTCATCATTAAGATTGTCCT GGCCTTGTTGCTTTTGGCCATGGTTGCCCTCTTCCTCTACAGCATGCCCGGTTACATGGTGAAGAAGCTT TTGGGTGCATGAGGAGCCGACAGTTGAAGGACTCTCTTGTAGTTGAAGGACTCTCTTGTAGATTTTCTCT GTAGATTGTCTTTTTCATCTCAAACTGTGAAGTTTAGCGAAAGTCTTTCTAAGCACATCTGTTCTGTGTG AGATATCTGTGCCCCTAATGAATAGCCGTTAATAAGAACAAAATGAAGAGTTACCAGAGAGGCCACCAAA TTGCATGCAACTGGATTCTTCCCCAACAACGACCAATCTGCTTCCACTTTTTTGGCCTTCAGAAAGGCTG AATATTATTTTTAGAGGTCTGATTCTTTTAAAAAGTAGAGTTTGGGACAATGTATGTTTTTTTTGTACAT GATCCCAACTGTATTGGCTGTGGGGTGCAAAGATATTATCTCGTCCCAAAAACACTGAAAAGCTCAAGCA AGTAGGATACAAATGGAAAGGGTTTCAGAGGAGCTTTCATAATAACAGTTCCTAGTTTAGCTATGGAATT ATCTCAATTTATATCATAAAACATATCAGAAATCAGGAACTAGTGATGTCCATGTTGCCTTTATATGGCA TCGGTATCATCATCTTCATTCAATCAGCCCCAAATCAATCACACGCCGCAGTACAGGGAGGCGCATGAAC AAGACCCACATTTATATTGAACAGAACAAGTCTGGAAAGATCAAGTTCCCTTTTCATCCAATTAACATTA ATCATTACCGAAACCTTAAAAAAAAATCTCCCGCTTCCAGAAGGATTTTGATGATTTGGAAAATGGGTTT ATATTTGGGAAAACACAAGATATATAAATATATATTCAGAGATTTATTTTACTAACCCGCTAACTCAGTA CTGACCACACTCTGCCATCCTTGATAAATCCCAACCCCACCTTATAAGCTGCACCTTTAATTGCTACATT GATAGAGAATAATGAAGTGTAAAAACAAGGCAGAACCTGCAAGTAGATCTAGAAACAAAGGAACCCCACA GACTTTTACAAATAGAAAACACCAACATTTTGTGTATCTCCCCCCGCCCCGAGATATTTAGGGCTAAAGA CAATTCTTTTGGTTTGAGTGTGACGTGAATTCTATTTATGGACCATTTCATTTCGCTCGGTTACGGGGAA GACGATTCCCTCGGTTTTGCACTAAATTTGAGTTTGTTGGATGTTGTATAGATTCTTATTTATAAGTCTC ACGCGTGCGACACTATTTATTCGTTTTTCCTCTGCTTGTCTTTGCGTTTGGATTGATTTTGAGATTTTAA AGTTGTTGATTTTTTTTTGTTTGTTTGTTTGTTACAATAAAACTGTAAATGGTC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
