Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly.
We suggest using a current version of Chrome,
FireFox, or Safari.
???displayArticle.abstract???
The South African clawed frog (Xenopus laevis), a prominent vertebrate model in cell and developmental biology, has been instrumental in studying molecular mechanisms of neural development and disease. Recently, high-resolution mass spectrometry (HRMS), a bioanalytical technology, has expanded the molecular toolbox of protein detection and characterization (proteomics). This chapter overviews the characteristics, advantages, and challenges of this biological model and technology. Discussions are offered on their combined use to aid studies on cell differentiation and development of neural tissues. Finally, the emerging integration of proteomics and other 'omic technologies is reflected on to generate new knowledge, drive and test new hypotheses, and ultimately, advance the understanding of neural development during states of health and disease.
Aebersold,
Western blots versus selected reaction monitoring assays: time to turn the tables?
2013, Pubmed
Aebersold,
Western blots versus selected reaction monitoring assays: time to turn the tables?
2013,
Pubmed
Arth,
Inpatient Hospitalization Costs Associated with Birth Defects Among Persons of All Ages - United States, 2013.
2017,
Pubmed
Baxi,
Proteomic Characterization of the Neural Ectoderm Fated Cell Clones in the Xenopus laevis Embryo by High-Resolution Mass Spectrometry.
2018,
Pubmed
,
Xenbase
Blum,
Xenopus: An Undervalued Model Organism to Study and Model Human Genetic Disease.
2018,
Pubmed
,
Xenbase
Borodinsky,
Xenopus laevis as a Model Organism for the Study of Spinal Cord Formation, Development, Function and Regeneration.
2017,
Pubmed
,
Xenbase
Bradbury,
Reproducibility: Standardize antibodies used in research.
2015,
Pubmed
Cagnetta,
Rapid Cue-Specific Remodeling of the Nascent Axonal Proteome.
2018,
Pubmed
,
Xenbase
Chen,
Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis.
2020,
Pubmed
Cox,
Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.
2014,
Pubmed
Dale,
Fate map for the 32-cell stage of Xenopus laevis.
1987,
Pubmed
,
Xenbase
DeLaney,
Recent Advances and New Perspectives in Capillary Electrophoresis-Mass Spectrometry for Single Cell "Omics".
2018,
Pubmed
DeLaney,
Mass Spectrometry Quantification, Localization, and Discovery of Feeding-Related Neuropeptides in Cancer borealis.
2021,
Pubmed
Demircan,
Proteome data to explore the axolotl limb regeneration capacity at neotenic and metamorphic stages.
2020,
Pubmed
Drew,
A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating machinery.
2020,
Pubmed
,
Xenbase
Duan,
The roles of post-translational modifications in the context of protein interaction networks.
2015,
Pubmed
Duncan,
Xenopus as a model organism for birth defects-Congenital heart disease and heterotaxy.
2016,
Pubmed
,
Xenbase
Federspiel,
Conservation and divergence of protein pathways in the vertebrate heart.
2019,
Pubmed
,
Xenbase
Fonslow,
Capillary electrophoresis applied to proteomic analysis.
2009,
Pubmed
Geng,
Proteomic analysis of eleven tissues in the Chinese giant salamander (Andrias davidianus).
2019,
Pubmed
Han,
Mass spectrometry for proteomics.
2008,
Pubmed
Harland,
Xenopus research: metamorphosed by genetics and genomics.
2011,
Pubmed
,
Xenbase
Hashimoto,
Contribution of Mass Spectrometry-Based Proteomics to Discoveries in Developmental Biology.
2019,
Pubmed
,
Xenbase
Huang,
Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
2009,
Pubmed
Hwang,
Xenopus: Driving the Discovery of Novel Genes in Patient Disease and Their Underlying Pathological Mechanisms Relevant for Organogenesis.
2019,
Pubmed
,
Xenbase
Issaq,
The role of separation science in proteomics research.
2001,
Pubmed
Jensen,
STRING 8--a global view on proteins and their functional interactions in 630 organisms.
2009,
Pubmed
Jensen,
Modification-specific proteomics: characterization of post-translational modifications by mass spectrometry.
2004,
Pubmed
Kong,
MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry-based proteomics.
2017,
Pubmed
Lee-Liu,
Quantitative Proteomics After Spinal Cord Injury (SCI) in a Regenerative and a Nonregenerative Stage in the Frog Xenopus laevis.
2018,
Pubmed
,
Xenbase
Lindemann,
Strategies in relative and absolute quantitative mass spectrometry based proteomics.
2017,
Pubmed
Lombard-Banek,
Microsampling Capillary Electrophoresis Mass Spectrometry Enables Single-Cell Proteomics in Complex Tissues: Developing Cell Clones in Live Xenopus laevis and Zebrafish Embryos.
2019,
Pubmed
,
Xenbase
Lombard-Banek,
In Vivo Subcellular Mass Spectrometry Enables Proteo-Metabolomic Single-Cell Systems Biology in a Chordate Embryo Developing to a Normally Behaving Tadpole (X. laevis)*.
2021,
Pubmed
,
Xenbase
Lombard-Banek,
Single-Cell Mass Spectrometry for Discovery Proteomics: Quantifying Translational Cell Heterogeneity in the 16-Cell Frog (Xenopus) Embryo.
2016,
Pubmed
,
Xenbase
Lombard-Banek,
New-generation mass spectrometry expands the toolbox of cell and developmental biology.
2017,
Pubmed
,
Xenbase
Lombard-Banek,
Label-free Quantification of Proteins in Single Embryonic Cells with Neural Fate in the Cleavage-Stage Frog (Xenopus laevis) Embryo using Capillary Electrophoresis Electrospray Ionization High-Resolution Mass Spectrometry (CE-ESI-HRMS).
2016,
Pubmed
,
Xenbase
Moody,
Fates of the blastomeres of the 16-cell stage Xenopus embryo.
1987,
Pubmed
,
Xenbase
Moody,
Fates of the blastomeres of the 32-cell-stage Xenopus embryo.
1987,
Pubmed
,
Xenbase
O'Connell,
Proteome-Wide Evaluation of Two Common Protein Quantification Methods.
2018,
Pubmed
Ong,
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics.
2002,
Pubmed
Onjiko,
Single-cell mass spectrometry reveals small molecules that affect cell fates in the 16-cell embryo.
2015,
Pubmed
,
Xenbase
Onjiko,
Metabolic Comparison of Dorsal versus Ventral Cells Directly in the Live 8-cell Frog Embryo by Microprobe Single-cell CE-ESI-MS.
2017,
Pubmed
,
Xenbase
Onjiko,
In Situ Microprobe Single-Cell Capillary Electrophoresis Mass Spectrometry: Metabolic Reorganization in Single Differentiating Cells in the Live Vertebrate (Xenopus laevis) Embryo.
2017,
Pubmed
,
Xenbase
Onjiko,
Microprobe Capillary Electrophoresis Mass Spectrometry for Single-cell Metabolomics in Live Frog (Xenopus laevis) Embryos.
2017,
Pubmed
,
Xenbase
Peshkin,
On the Relationship of Protein and mRNA Dynamics in Vertebrate Embryonic Development.
2015,
Pubmed
,
Xenbase
Peuchen,
Optimization and comparison of bottom-up proteomic sample preparation for early-stage Xenopus laevis embryos.
2016,
Pubmed
,
Xenbase
Pino,
Emerging mass spectrometry-based proteomics methodologies for novel biomedical applications.
2020,
Pubmed
Pino,
The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics.
2020,
Pubmed
Portero,
Dual cationic-anionic profiling of metabolites in a single identified cell in a live Xenopus laevis embryo by microprobe CE-ESI-MS.
2019,
Pubmed
,
Xenbase
Pratt,
Modeling human neurodevelopmental disorders in the Xenopus tadpole: from mechanisms to therapeutic targets.
2013,
Pubmed
,
Xenbase
Presler,
Proteomics of phosphorylation and protein dynamics during fertilization and meiotic exit in the Xenopus egg.
2017,
Pubmed
,
Xenbase
Sater,
Using Xenopus to understand human disease and developmental disorders.
2017,
Pubmed
,
Xenbase
Schiapparelli,
The Retinal Ganglion Cell Transportome Identifies Proteins Transported to Axons and Presynaptic Compartments in the Visual System In Vivo.
2019,
Pubmed
Session,
Genome evolution in the allotetraploid frog Xenopus laevis.
2016,
Pubmed
,
Xenbase
Smits,
Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs.
2014,
Pubmed
,
Xenbase
Sun,
Quantitative proteomics of Xenopus laevis embryos: expression kinetics of nearly 4000 proteins during early development.
2014,
Pubmed
,
Xenbase
Sun,
Single Cell Proteomics Using Frog (Xenopus laevis) Blastomeres Isolated from Early Stage Embryos, Which Form a Geometric Progression in Protein Content.
2016,
Pubmed
,
Xenbase
Tyanova,
The MaxQuant computational platform for mass spectrometry-based shotgun proteomics.
2016,
Pubmed
Walther,
Mass spectrometry-based proteomics in cell biology.
2010,
Pubmed
Wang,
MALDI-imaging of early stage Xenopus laevis embryos.
2019,
Pubmed
,
Xenbase
Wang,
Cellular retinol binding protein 1 modulates photoreceptor outer segment folding in the isolated eye.
2010,
Pubmed
,
Xenbase
Waterston,
Initial sequencing and comparative analysis of the mouse genome.
2002,
Pubmed
Wühr,
Deep proteomics of the Xenopus laevis egg using an mRNA-derived reference database.
2014,
Pubmed
,
Xenbase
Zhang,
Protein analysis by shotgun/bottom-up proteomics.
2013,
Pubmed