Figure 2—figure supplement 3. Three examples of RNA-seq and ChIP-seq data. (A) ift172 (B) ribc2 (C) ttc29. In each figure, the top panel plots ChIP-seq read depths for Rfx2-GFP (red) and the GFP control (gray) samples across the genomic scaffold, while the middle panel plots RNA-seq read depths for the two replicate control experiments (red and magenta) and Rfx2 morpholino knockdown experiments (blue and cyan). All mapping results are reported as raw read counts (not normalized). Each bottom panel indicates the corresponding X. laevis gene model, indicating transcription start sites with black arrows. In each case, Rfx2 binds near the first exon of the transcripts, and gene models match well to exons from the RNA-seq data.
Image published in: Chung MI et al. (2014)
Copyright © 2013, Chung et al. This image is reproduced with permission of the journal and the copyright holder. This is an open-access article distributed under the terms of the Creative Commons Attribution license
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