XB-ART-55844
Dis Model Mech
2019 Apr 09;124:. doi: 10.1242/dmm.038604.
Show Gene links
Show Anatomy links
Modeling congenital kidney diseases in Xenopus laevis.
Blackburn ATM
,
Miller RK
.
???displayArticle.abstract???
Congenital anomalies of the kidney and urinary tract (CAKUT) occur in ∼1/500 live births and are a leading cause of pediatric kidney failure. With an average wait time of 3-5 years for a kidney transplant, the need is high for the development of new strategies aimed at reducing the incidence of CAKUT and preserving renal function. Next-generation sequencing has uncovered a significant number of putative causal genes, but a simple and efficient model system to examine the function of CAKUT genes is needed. Xenopus laevis (frog) embryos are well-suited to model congenital kidney diseases and to explore the mechanisms that cause these developmental defects. Xenopus has many advantages for studying the kidney: the embryos develop externally and are easily manipulated with microinjections, they have a functional kidney in ∼2 days, and 79% of identified human disease genes have a verified ortholog in Xenopus This facilitates high-throughput screening of candidate CAKUT-causing genes. In this Review, we present the similarities between Xenopus and mammalian kidneys, highlight studies of CAKUT-causing genes in Xenopus and describe how common kidney diseases have been modeled successfully in this model organism. Additionally, we discuss several molecular pathways associated with kidney disease that have been studied in Xenopus and demonstrate why it is a useful model for studying human kidney diseases.
???displayArticle.pubmedLink??? 30967415
???displayArticle.pmcLink??? PMC6505484
???displayArticle.link??? Dis Model Mech
???displayArticle.grants??? [+]
Species referenced: Xenopus laevis
Genes referenced: anks6 bicc1 bmp4 clcnkb ctnnb1 foxc1 foxc2 gdnf hnf1b hsp70 invs lhx1 lmx1b lmx1b.2 mafb nek8 nphp3 nphp4 nrip1 osr1 osr2 pax2 pax8 pkd1 pkd2 pou3f3 sall1 slc3a1 tsc2 wdpcp wnt4 wt1
???displayArticle.disOnts??? CAKUT [+]
???displayArticle.omims??? NEPHRONOPHTHISIS 1; NPHP1 [+]
???attribute.lit??? ???displayArticles.show???
References [+] :
Abdelhak,
A human homologue of the Drosophila eyes absent gene underlies branchio-oto-renal (BOR) syndrome and identifies a novel gene family.
1997, Pubmed
Abdelhak, A human homologue of the Drosophila eyes absent gene underlies branchio-oto-renal (BOR) syndrome and identifies a novel gene family. 1997, Pubmed
Al-Maawali, Taking angiotensin-converting enzyme inhibitors during pregnancy: is it safe? 2012, Pubmed
Aslan, High-efficiency non-mosaic CRISPR-mediated knock-in and indel mutation in F0 Xenopus. 2017, Pubmed , Xenbase
Baker, Wnt signaling in Xenopus embryos inhibits bmp4 expression and activates neural development. 1999, Pubmed , Xenbase
Beck, An amphibian with ambition: a new role for Xenopus in the 21st century. 2001, Pubmed , Xenbase
Bendl, PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations. 2014, Pubmed
Bertram, Human nephron number: implications for health and disease. 2011, Pubmed
Bhattacharya, CRISPR/Cas9: An inexpensive, efficient loss of function tool to screen human disease genes in Xenopus. 2015, Pubmed , Xenbase
Blitz, Leapfrogging: primordial germ cell transplantation permits recovery of CRISPR/Cas9-induced mutations in essential genes. 2016, Pubmed , Xenbase
Bohn, Distinct molecular and morphogenetic properties of mutations in the human HNF1beta gene that lead to defective kidney development. 2003, Pubmed , Xenbase
Boualia, A core transcriptional network composed of Pax2/8, Gata3 and Lim1 regulates key players of pro/mesonephros morphogenesis. 2013, Pubmed
Bouchard, Nephric lineage specification by Pax2 and Pax8. 2002, Pubmed
Bracken, Patterning the embryonic kidney: BMP signaling mediates the differentiation of the pronephric tubules and duct in Xenopus laevis. 2008, Pubmed , Xenbase
Buisson, Pax8 and Pax2 are specifically required at different steps of Xenopus pronephros development. 2015, Pubmed , Xenbase
Burtey, Cloning and expression of the amphibian homologue of the human PKD1 gene. 2005, Pubmed , Xenbase
Caine, Regeneration of functional pronephric proximal tubules after partial nephrectomy in Xenopus laevis. 2013, Pubmed , Xenbase
Capriotti, Collective judgment predicts disease-associated single nucleotide variants. 2013, Pubmed
Carroll, Molecular regulation of pronephric development. 1999, Pubmed , Xenbase
Carroll, Wnt9b plays a central role in the regulation of mesenchymal to epithelial transitions underlying organogenesis of the mammalian urogenital system. 2005, Pubmed , Xenbase
Chan, A model system for organ engineering: transplantation of in vitro induced embryonic kidney. 1999, Pubmed , Xenbase
Christensen, Gene expression analysis defines the proximal tubule as the compartment for endocytic receptor-mediated uptake in the Xenopus pronephric kidney. 2008, Pubmed , Xenbase
Corkins, Transgenic Xenopus laevis Line for In Vivo Labeling of Nephrons within the Kidney. 2018, Pubmed , Xenbase
Costantini, Patterning a complex organ: branching morphogenesis and nephron segmentation in kidney development. 2010, Pubmed
Dale, Fate map for the 32-cell stage of Xenopus laevis. 1987, Pubmed , Xenbase
Deconinck, FOG acts as a repressor of red blood cell development in Xenopus. 2000, Pubmed , Xenbase
DeLay, Tissue-Specific Gene Inactivation in Xenopus laevis: Knockout of lhx1 in the Kidney with CRISPR/Cas9. 2018, Pubmed , Xenbase
DeLay, Dynamin Binding Protein Is Required for Xenopus laevis Kidney Development. 2019, Pubmed , Xenbase
DeLay, Technique to Target Microinjection to the Developing Xenopus Kidney. 2016, Pubmed , Xenbase
Deltas, Mutations of the human polycystic kidney disease 2 (PKD2) gene. 2001, Pubmed
Denayer, In vivo tracing of canonical Wnt signaling in Xenopus tadpoles by means of an inducible transgenic reporter tool. 2006, Pubmed , Xenbase
Dressler, The cellular basis of kidney development. 2006, Pubmed , Xenbase
Drews, The nephrogenic potential of the transcription factors osr1, osr2, hnf1b, lhx1 and pax8 assessed in Xenopus animal caps. 2011, Pubmed , Xenbase
Edwards, A novel LMX1B mutation in a family with end-stage renal disease of 'unknown cause'. 2015, Pubmed
Eid, Embryonic expression of Xenopus SGLT-1L, a novel member of the solute carrier family 5 (SLC5), is confined to tubules of the pronephric kidney. 2002, Pubmed , Xenbase
Eisen, Controlling morpholino experiments: don't stop making antisense. 2008, Pubmed , Xenbase
FOX, The amphibian pronephros. 1963, Pubmed
Gentsch, Innate Immune Response and Off-Target Mis-splicing Are Common Morpholino-Induced Side Effects in Xenopus. 2018, Pubmed , Xenbase
Gimelli, Mutations in SOX17 are associated with congenital anomalies of the kidney and the urinary tract. 2010, Pubmed
Gong, HNF-1beta regulates transcription of the PKD modifier gene Kif12. 2009, Pubmed
Gresh, A transcriptional network in polycystic kidney disease. 2004, Pubmed
Gribouval, Spectrum of mutations in the renin-angiotensin system genes in autosomal recessive renal tubular dysgenesis. 2012, Pubmed
Halbritter, Identification of 99 novel mutations in a worldwide cohort of 1,056 patients with a nephronophthisis-related ciliopathy. 2013, Pubmed
Haldin, The lmx1b gene is pivotal in glomus development in Xenopus laevis. 2008, Pubmed , Xenbase
Halt, Coordination of kidney organogenesis by Wnt signaling. 2014, Pubmed
Hellsten, The genome of the Western clawed frog Xenopus tropicalis. 2010, Pubmed , Xenbase
Hoff, ANKS6 is a central component of a nephronophthisis module linking NEK8 to INVS and NPHP3. 2013, Pubmed , Xenbase
Holbrook, Molecular basis for the dual mitochondrial and cytosolic localization of alanine:glyoxylate aminotransferase in amphibian liver cells. 2002, Pubmed , Xenbase
Hurtado Del Pozo, Modeling epigenetic modifications in renal development and disease with organoids and genome editing. 2018, Pubmed
Hwang, Mutations in 12 known dominant disease-causing genes clarify many congenital anomalies of the kidney and urinary tract. 2014, Pubmed
Iglesias, Canonical WNT signaling during kidney development. 2007, Pubmed
Kaminski, Direct reprogramming of fibroblasts into renal tubular epithelial cells by defined transcription factors. 2016, Pubmed , Xenbase
Kim, Conditional mutation of Pkd2 causes cystogenesis and upregulates beta-catenin. 2009, Pubmed
Kim, Planar cell polarity acts through septins to control collective cell movement and ciliogenesis. 2010, Pubmed , Xenbase
Kim, A novel Wilms tumor 1 (WT1) target gene negatively regulates the WNT signaling pathway. 2010, Pubmed
Kraus, Two mutations in human BICC1 resulting in Wnt pathway hyperactivity associated with cystic renal dysplasia. 2012, Pubmed
Kyuno, GDNF expression during Xenopus development. 2007, Pubmed , Xenbase
Li, EYA1 mutations associated with the branchio-oto-renal syndrome result in defective otic development in Xenopus laevis. 2010, Pubmed , Xenbase
Lian, Loss of polycystin-1 inhibits Bicc1 expression during mouse development. 2014, Pubmed
Lienkamp, Inversin relays Frizzled-8 signals to promote proximal pronephros development. 2010, Pubmed , Xenbase
Lindström, Conserved and Divergent Molecular and Anatomic Features of Human and Mouse Nephron Patterning. 2018, Pubmed
Little, Mammalian kidney development: principles, progress, and projections. 2012, Pubmed
Lu, Comparison of Pkd1-targeted mutants reveals that loss of polycystin-1 causes cystogenesis and bone defects. 2001, Pubmed
Lyons, Requirement of Wnt/beta-catenin signaling in pronephric kidney development. 2009, Pubmed , Xenbase
Maguire, Early transcriptional targets of MyoD link myogenesis and somitogenesis. 2012, Pubmed , Xenbase
Matsumura, Overt nephrogenic diabetes insipidus in mice lacking the CLC-K1 chloride channel. 1999, Pubmed
Miner, Transcriptional induction of slit diaphragm genes by Lmx1b is required in podocyte differentiation. 2002, Pubmed
Møbjerg, Morphology of the kidney in larvae of Bufo viridis (Amphibia, Anura, Bufonidae). 2000, Pubmed , Xenbase
Moody, Fates of the blastomeres of the 32-cell-stage Xenopus embryo. 1987, Pubmed , Xenbase
Murugan, WT1 and Sox11 regulate synergistically the promoter of the Wnt4 gene that encodes a critical signal for nephrogenesis. 2012, Pubmed , Xenbase
Nagamani, Clinical spectrum associated with recurrent genomic rearrangements in chromosome 17q12. 2010, Pubmed
Nakano, Screening for mutations in BMP4 and FOXC1 genes in congenital anomalies of the kidney and urinary tract in humans. 2003, Pubmed
Naylor, Notch activates Wnt-4 signalling to control medio-lateral patterning of the pronephros. 2009, Pubmed , Xenbase
Neugebauer, The prodomain of BMP4 is necessary and sufficient to generate stable BMP4/7 heterodimers with enhanced bioactivity in vivo. 2015, Pubmed , Xenbase
Nishinakamura, Kidney development conserved over species: essential roles of Sall1. 2003, Pubmed , Xenbase
Ochi, Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues. 2012, Pubmed , Xenbase
Olbrich, Mutations in a novel gene, NPHP3, cause adolescent nephronophthisis, tapeto-retinal degeneration and hepatic fibrosis. 2003, Pubmed
Prato, Hirschsprung disease and congenital anomalies of the kidney and urinary tract (CAKUT): a novel syndromic association. 2009, Pubmed
Quassinti, Comparison of ACE activity in amphibian tissues: Rana esculenta and Xenopus laevis. 2007, Pubmed , Xenbase
Raciti, Organization of the pronephric kidney revealed by large-scale gene expression mapping. 2008, Pubmed , Xenbase
Rankin, New doxycycline-inducible transgenic lines in Xenopus. 2011, Pubmed , Xenbase
Reggiani, The prepattern transcription factor Irx3 directs nephron segment identity. 2007, Pubmed , Xenbase
Romaker, MicroRNAs are critical regulators of tuberous sclerosis complex and mTORC1 activity in the size control of the Xenopus kidney. 2014, Pubmed , Xenbase
Roose, Heat-shock inducible Cre strains to study organogenesis in transgenic Xenopus laevis. 2009, Pubmed , Xenbase
Rosselot, Non-cell-autonomous retinoid signaling is crucial for renal development. 2010, Pubmed
Ruf, SIX1 mutations cause branchio-oto-renal syndrome by disruption of EYA1-SIX1-DNA complexes. 2004, Pubmed
Sanna-Cherchi, Genetic basis of human congenital anomalies of the kidney and urinary tract. 2018, Pubmed
Sauert, Heat-shock mediated overexpression of HNF1β mutations has differential effects on gene expression in the Xenopus pronephric kidney. 2012, Pubmed , Xenbase
Saulnier, Essential function of Wnt-4 for tubulogenesis in the Xenopus pronephric kidney. 2002, Pubmed , Xenbase
Schmitt, Engineering Xenopus embryos for phenotypic drug discovery screening. 2014, Pubmed , Xenbase
Seys, Clinical and Genetic Spectrum of Bartter Syndrome Type 3. 2017, Pubmed , Xenbase
Shawlot, Requirement for Lim1 in head-organizer function. 1995, Pubmed
Shi, Heritable CRISPR/Cas9-mediated targeted integration in Xenopus tropicalis. 2015, Pubmed , Xenbase
Short, Global quantification of tissue dynamics in the developing mouse kidney. 2014, Pubmed
Simon, Mutations in the chloride channel gene, CLCNKB, cause Bartter's syndrome type III. 1997, Pubmed
Sinner, Global analysis of the transcriptional network controlling Xenopus endoderm formation. 2006, Pubmed , Xenbase
Skinner, Renal aplasia in humans is associated with RET mutations. 2008, Pubmed
Srivastava, Many Genes-One Disease? Genetics of Nephronophthisis (NPHP) and NPHP-Associated Disorders. 2017, Pubmed
Suspitsin, Bardet-Biedl Syndrome. 2016, Pubmed
Suzuki, Identification of distal enhancers for Six2 expression in pronephros. 2015, Pubmed , Xenbase
Suzuki, Arid3a regulates nephric tubule regeneration via evolutionarily conserved regeneration signal-response enhancers. 2019, Pubmed , Xenbase
Taskiran, Mutations in ANKS6 cause a nephronophthisis-like phenotype with ESRD. 2014, Pubmed
Tena, Odd-skipped genes encode repressors that control kidney development. 2007, Pubmed , Xenbase
Tran, Xenopus Bicaudal-C is required for the differentiation of the amphibian pronephros. 2007, Pubmed , Xenbase
Tran, The RNA-binding protein bicaudal C regulates polycystin 2 in the kidney by antagonizing miR-17 activity. 2010, Pubmed , Xenbase
Urban, FGF is essential for both condensation and mesenchymal-epithelial transition stages of pronephric kidney tubule development. 2006, Pubmed , Xenbase
Van Esch, GATA3 haplo-insufficiency causes human HDR syndrome. 2000, Pubmed
Verdeguer, A mitotic transcriptional switch in polycystic kidney disease. 2010, Pubmed
Vivante, Renal hypodysplasia associates with a WNT4 variant that causes aberrant canonical WNT signaling. 2013, Pubmed
Vivante, A Dominant Mutation in Nuclear Receptor Interacting Protein 1 Causes Urinary Tract Malformations via Dysregulation of Retinoic Acid Signaling. 2017, Pubmed , Xenbase
Vivante, Single-gene causes of congenital anomalies of the kidney and urinary tract (CAKUT) in humans. 2014, Pubmed
Vize, The chloride conductance channel ClC-K is a specific marker for the Xenopus pronephric distal tubule and duct. 2003, Pubmed , Xenbase
Wang, A novel Xenopus homologue of bone morphogenetic protein-7 (BMP-7). 1997, Pubmed , Xenbase
Waters, Ciliopathies: an expanding disease spectrum. 2011, Pubmed
Weber, SIX2 and BMP4 mutations associate with anomalous kidney development. 2008, Pubmed
Wessely, Xenopus pronephros development--past, present, and future. 2011, Pubmed , Xenbase
White, Notch signaling, wt1 and foxc2 are key regulators of the podocyte gene regulatory network in Xenopus. 2010, Pubmed , Xenbase
Wing, DNA methylation profile associated with rapid decline in kidney function: findings from the CRIC study. 2014, Pubmed
Wolf, Nephronophthisis. 2011, Pubmed
Xue, Deleterious- and disease-allele prevalence in healthy individuals: insights from current predictions, mutation databases, and population-scale resequencing. 2012, Pubmed
Yan, Microarray identification of novel genes downstream of Six1, a critical factor in cranial placode, somite, and kidney development. 2015, Pubmed , Xenbase
Yildirim-Toruner, A novel frameshift mutation of FOXC2 gene in a family with hereditary lymphedema-distichiasis syndrome associated with renal disease and diabetes mellitus. 2004, Pubmed
Yosypiv, Congenital anomalies of the kidney and urinary tract: a genetic disorder? 2012, Pubmed
Zalli, The Nek8 protein kinase, mutated in the human cystic kidney disease nephronophthisis, is both activated and degraded during ciliogenesis. 2012, Pubmed
Zhou, Pronephric regulation of acid-base balance; coexpression of carbonic anhydrase type 2 and sodium-bicarbonate cotransporter-1 in the late distal segment. 2005, Pubmed , Xenbase
Zhou, Proximo-distal specialization of epithelial transport processes within the Xenopus pronephric kidney tubules. 2004, Pubmed , Xenbase
Zhuo, An inducible expression system to measure rhodopsin transport in transgenic Xenopus rod outer segments. 2013, Pubmed , Xenbase