Fig S3 â Spatial expression of selected genes by in situ, related to Fig 1 All panels give Clutch A PolyA+ (circles), Clutch B PolyA+ (triangles) and Gaussian Process median line and 95% confidence intervals. Numbers on in situ images indicate the Gaussian process median number of transcripts for the given stage. (A) Genes involved in muscle induction. (B) Genes with onset midway through the timecourse. (C) Genes with onset late in the timecourse.
Image published in: Owens ND et al. (2016)
Copyright © 2016. Image reproduced with permission of the Publisher and the copyright holder. This is an Open Access article distributed under the terms of the Creative Commons Attribution License.
| Gene | Synonyms | Species | Stage(s) | Tissue |
|---|---|---|---|---|
| myf5 | myf-5, Xmyf-5, Xmyf5 | X. tropicalis | Throughout NF stage 11 | dorso-lateral marginal zone |
| myod1 | mf25, MyoD, myod1-a, myod1-b, myogenic factor 3, XMyoD, XtmyoD | X. tropicalis | Sometime during NF stage 11 to NF stage 23 | presomitic mesoderm |
| myf5 | myf-5, Xmyf-5, Xmyf5 | X. tropicalis | Sometime during NF stage 12 to NF stage 14 | paraxial mesoderm |
| tbxt | bra, brachyury, ntl, t, t-a, t-b, X-bra, Xbra, Xbrachyury | X. tropicalis | Sometime during NF stage 12 to NF stage 19 | mesoderm |
| acta4 | ac100, act3, femoral actin, MA, muscle actin, skeletal actin | X. tropicalis | Sometime during NF stage 12.5 to NF stage 19 | presomitic mesoderm |
| ctrl | X. tropicalis | Sometime during NF stage 15 to NF stage 19 | neural plate | |
| col3a1 | X. tropicalis | Sometime during NF stage 19 to NF stage 29 and 30 | melanophore | |
| g6pc1 | g6pc1.1, g6pc2, igrp | X. tropicalis | Sometime during NF stage 21 to NF stage 29 and 30 | alimentary system |
| myf5 | myf-5, Xmyf-5, Xmyf5 | X. tropicalis | Sometime during NF stage 23 to NF stage 28 | myoblast |
| tbxt | bra, brachyury, ntl, t, t-a, t-b, X-bra, Xbra, Xbrachyury | X. tropicalis | Sometime during NF stage 23 to NF stage 28 | circumblastoporal collar |
| myod1 | mf25, MyoD, myod1-a, myod1-b, myogenic factor 3, XMyoD, XtmyoD | X. tropicalis | Sometime during NF stage 23 to NF stage 28 | somite |
| acta4 | ac100, act3, femoral actin, MA, muscle actin, skeletal actin | X. tropicalis | Sometime during NF stage 23 to NF stage 28 | somite |
| ankrd2 | ankrd2-a, ankrd2-b, arpp | X. tropicalis | Sometime during NF stage 23 to NF stage 28 | muscle |
| hbe1 | hbe | X. tropicalis | Sometime during NF stage 23 to NF stage 29 and 30 | ventral blood island |
| ctrl | X. tropicalis | Sometime during NF stage 29 and 30 to NF stage 39 | foregut | |
| ctrb1 | chymotrypsinogen B, ctrb, LOC108715072 | X. tropicalis | Sometime during NF stage 29 and 30 to NF stage 39 | head foregut |
| mep1a | MGC86332 | X. tropicalis | Sometime during NF stage 39 to NF stage 40 | head |
| thdl18 | gene 18 | X. tropicalis | Sometime during NF stage 39 to NF stage 41 | eye fin |
| ctrl | X. tropicalis | Sometime during NF stage 41 to NF stage 43 | pancreas dorsal pancreatic bud ventral pancreatic bud | |
| ctrb1 | chymotrypsinogen B, ctrb, LOC108715072 | X. tropicalis | Sometime during NF stage 41 to NF stage 43 | pancreas dorsal pancreatic bud ventral pancreatic bud |
| cpb1 | LOC108716366 | X. tropicalis | Sometime during NF stage 41 to NF stage 43 | pancreas dorsal pancreatic bud ventral pancreatic bud |
| mep1a | MGC86332 | X. tropicalis | Sometime during NF stage 41 to NF stage 43 | alimentary system |
| mep1b | LOC108718576 | X. tropicalis | Sometime during NF stage 41 to NF stage 43 | alimentary system |
| thdl17 | gene 17 | X. tropicalis | Sometime during NF stage 41 to NF stage 43 | eye |
| thdl18 | gene 18 | X. tropicalis | Throughout NF stage 43 | fin ventral |
| ace2 | X. tropicalis | Throughout NF stage 43 | alimentary system | |
| tbxt | bra, brachyury, ntl, t, t-a, t-b, X-bra, Xbra, Xbrachyury | X. tropicalis | Sometime during NF stage 9 to NF stage 11 | marginal zone |
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