Fig. 3. In situ hybridisation analysis of genes that are up-regulated by VegT. Embryos were fixed at early gastrula stage 10, bisected, and subjected to in situ hybridisation. The first image shows the expression pattern of VegT/Antipodean and the second a schematic representation of the three germ layers, colourcoded as in Table 3, with ectoderm shaded red, mesoderm yellow, and endoderm blue. The images are labelled according to the clone identification number of the gene in question.
Image published in: Taverner NV et al. (2005)
Copyright © 2005. Image reproduced with permission of the Publisher, Elsevier B. V.
| Gene | Synonyms | Species | Stage(s) | Tissue |
|---|---|---|---|---|
| wnt5b.S | MGC89512, wnt-5b, xwnt5b | X. laevis | Throughout NF stage 10 | |
| cxcr4.L | cd184, cxcr4-a, cxcr4-b, fb22, hm89, hsy3rr, lap3, lcr1, lestr, npy3r, npyr, npyrl, npyy3r, xcxcr4 | X. laevis | Throughout NF stage 10 | |
| post.L | LOC108704914, LOC121394293, Xpo | X. laevis | Throughout NF stage 10 | |
| dhcr7.L | 7-Dhcr, Xdhcr7 | X. laevis | Throughout NF stage 10 | |
| atp1a1.L | atp1a1-a, atp1a1-b, K-ATPase, Na+/K+ ATPase, Na+K+ ATPase, Na+K+ATPase | X. laevis | Throughout NF stage 10 | |
| zswim4.L | zswim5 | X. laevis | Throughout NF stage 10 | |
| zic2.L | hpe5, xzic2, zic2-a, zic2-b, Zinc finger protein of the cerebellum 2 | X. laevis | Throughout NF stage 10 | |
| nradd.S | nrdd | X. laevis | Throughout NF stage 10 | |
| txnl4a.S | X. laevis | Throughout NF stage 10 | ||
| esr-5.L | ESR 5, esr5, LOC108703524, x-esr5, Xesr5 | X. laevis | Throughout NF stage 10 | |
| cyp26a1.S | cyp26, RACE, retinoic acid converting enzyme, xCYP26, XCYP26A1 | X. laevis | Throughout NF stage 10 | |
| XB5748694.L | cep4l | X. laevis | Throughout NF stage 10 | |
| alpl.L | X. laevis | Throughout NF stage 10 | ||
| rhov.S | arhv, Chp, LOC108700588, LOC503674, wrch2 | X. laevis | Throughout NF stage 10 | |
| foxb1.S | fkh-5, fkh5, xfkh-5 | X. laevis | Throughout NF stage 10 | |
| cdx4.L | cad3, MGC130769, MGC68909, Xcad-3, Xcad3, Xtcad3 | X. laevis | Throughout NF stage 10 | |
| rpl24.L | X. laevis | Throughout NF stage 10 | ||
| gdf3.S | derriere, derriére, gdf1, gdf-3, vgr-2, vgr2 | X. laevis | Throughout NF stage 10 | |
| myc.S | c-myc, cmyc, myc-a, myc-b, X-cmyc, Xcmyc | X. laevis | Throughout NF stage 10 | |
| pygb.S | X. laevis | Throughout NF stage 10 | ||
| slc12a3l.L | LOC108695638, ncct, scl12a3l, slc12a3.2, slc12a3-like | X. laevis | Throughout NF stage 10 | |
| kif26a.S | X. laevis | Throughout NF stage 10 | ||
| krt18.L | cyk18, endo B, ENDO-B KERATIN, k18, krt18.1, krt18-a, krt18-b, NC-11 | X. laevis | Throughout NF stage 10 | |
| admp2.L | X. laevis | Throughout NF stage 10 | ||
| tmod4.L | sk-tropomodulin | X. laevis | Throughout NF stage 10 | |
| set.S | 2pp2a, i2pp2a, igaad, ipp2a2, phapii, set-a, set-b, TAF-I, taf-ibeta | X. laevis | Throughout NF stage 10 | |
| mdn1.L | midasin | X. laevis | Throughout NF stage 10 | |
| nrf1.S | alpha-pal, nrf-1 | X. laevis | Throughout NF stage 10 | |
| prickle1.S | prickle, prickle1-a, prickle1-b, prickle A, prickle B, Prickle-b, XPk, XPk-1 | X. laevis | Throughout NF stage 10 | |
| set.S | 2pp2a, i2pp2a, igaad, ipp2a2, phapii, set-a, set-b, TAF-I, taf-ibeta | X. laevis | Throughout NF stage 10 | |
| ckm.L | ckmm, creatine kinase, m-ck | X. laevis | Throughout NF stage 10 | |
| mid1ip1.S | mig12, thrspl | X. laevis | Throughout NF stage 10 | |
| copa.L | X. laevis | Throughout NF stage 10 | ||
| aplnr.S | agtrl1, angio1, apj, apjr, aplnr-a, aplnr-b, hg11, msr, Xangio1, X-msr, Xmsr | X. laevis | Throughout NF stage 10 | |
| rnf19a.S | rnf19 | X. laevis | Throughout NF stage 10 | |
| dhrs3.L | X. laevis | Throughout NF stage 10 | ||
| pnhd.L | pinhead | X. laevis | Throughout NF stage 10 | |
| stx6.L | X. laevis | Throughout NF stage 10 | ||
| ggt1.L | cd224, gamma-glutamyltransferase, gamma-glutamyl transpeptidase, ggt, ggt 1, gtg | X. laevis | Throughout NF stage 10 | |
| tp63.L | ket, np63, p63, tp73l, trp63, Xp63 | X. laevis | Throughout NF stage 10 | |
| spry1.S | sprouty, sprouty 1, sprouty-1, sprouty1, spry1-a, spry1-b, xspry1, Xtsprouty1 | X. laevis | Throughout NF stage 10 | |
| ventx1.L | posterior-ventral 1, PV.1, ventx1.1, ventx1.1-a, ventx1.1-b, Xvent-1b | X. laevis | Throughout NF stage 10 | |
| nradd.L | nrdd | X. laevis | Throughout NF stage 10 | |
| epha4.L | eph-a4, epha4-a, epha4-b, hek8, Pag, Pagliaccio, rtk1, sek, sek-1, tyr01, XEpha4 | X. laevis | Throughout NF stage 10 | |
| flrt3.L | xflrt3 | X. laevis | Throughout NF stage 10 | |
| sp5l.S | gli1-2, spr-2, spr2, xspr-2, XSpr2 | X. laevis | Throughout NF stage 10 | |
| rdh10.L | rdh10-a, rdh10-b, SDR16C4, XRDH10, XRDH10a, XRDH10b | X. laevis | Throughout NF stage 10 | |
| best2.L | best2-a, best2-b, vmd2l1 | X. laevis | Throughout NF stage 10 | |
| slc2a1.L | glut1, ped, slc2a14 | X. laevis | Throughout NF stage 10 | |
| hes5.7.L | esr9, hes9, hes9.1-a, hes9.1-b | X. laevis | Throughout NF stage 10 | |
| slc16a6.L | MCT7 | X. laevis | Throughout NF stage 10 | |
| chrd.S | chd, chordin, chrd.1, LOC108716939, X-chordin | X. laevis | Throughout NF stage 10 | |
| hes7.2.L | enhancer-of-split-related 4, ESR 4, ESR-4, esr4 | X. laevis | Throughout NF stage 10 | |
| vcan.L | chondroitin sulfate proteoglycan 2, LOC108707243, versican, Xversican | X. laevis | Throughout NF stage 10 | |
| fzd7.L | frizzled 7, frizzled-7, frizzled7, frz-7, frz7, Fz-7, fz7, Xfz7 | X. laevis | Throughout NF stage 10 | |
| exosc5.L | hrrp46p, LOC108700579, rrp41b, rrp46, rrp46p | X. laevis | Throughout NF stage 10 | |
| has2.S | XHas2 | X. laevis | Throughout NF stage 10 | |
| wnt11b.L | wnt-11, wnt11, Xwnt-11, xwnt11 | X. laevis | Throughout NF stage 10 | |
| slc6a14.2.L | XAA1 | X. laevis | Throughout NF stage 10 | |
| msx1.L | hox-7, hox7, msx-1, msx1-a, msx1-b, Xhox-7.1, Xmsx-1, xmsx1 | X. laevis | Throughout NF stage 10 | |
| pdlim5.L | X. laevis | Throughout NF stage 10 | ||
| rdh10.L | rdh10-a, rdh10-b, SDR16C4, XRDH10, XRDH10a, XRDH10b | X. laevis | Throughout NF stage 10 | |
| krt8.S | CK1, keratin8, krt8.1, XCK1 | X. laevis | Throughout NF stage 10 | |
| cdk5r1l.S | cdk5r1, Xp35.1, Xp35.2 | X. laevis | Throughout NF stage 10 | |
| utp4.L | cirh1a, cirhin, tex292 | X. laevis | Throughout NF stage 10 | |
| foxc1.L | fkhl7, foxc1-a, foxc1-b, freac-3, freac3, igda, ihg1, irid1, rieg3, xfd-11 | X. laevis | Throughout NF stage 10 | |
| lin28a.S | csdd1, lin-28, lin28, zcchc1 | X. laevis | Throughout NF stage 10 | |
| rap2b.S | X. laevis | Throughout NF stage 10 | ||
| ventx1.2.S | vent-1, vent1, Xvent-1, Xvent1 | X. laevis | Throughout NF stage 10 | |
| myod1.S | mf25, MyoD, myod1-a, myod1-b, myogenic factor 3, XMyoD, XtmyoD | X. laevis | Throughout NF stage 10 | |
| hey1.S | bc8, chf2, herp2, hesr1, hrt-1, hrt1, oaf1, XHRT1 | X. laevis | Throughout NF stage 10 | |
| dhrs3.L | X. laevis | Throughout NF stage 10 | ||
| epha4.L | eph-a4, epha4-a, epha4-b, hek8, Pag, Pagliaccio, rtk1, sek, sek-1, tyr01, XEpha4 | X. laevis | Throughout NF stage 10 | |
| flrt3.S | xflrt3 | X. laevis | Throughout NF stage 10 |
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