Fig. 2. Genes with superficial expression; Part 2. A wholemount and a section are shown for each gene at gastrula (left-hand panels) and neural plate stage (right-hand panels). The gastrula stage wholemounts have the animal hemisphere to the top. The sections show expression in the animal hemisphere except for NEPH1 which shows the marginal zone as it has stronger expression in the marginal zone. The stage 14 wholemounts are shown as lateral (L) or dorsal views (D) as indicated with anterior to the left. The stage 14 sections are transverse and show expression in the epidermis except for NEPH1 which is sagittal. NEPH1 has a complicated expression pattern which includes the notochord (white arrow), two bands in the anterior neural plate (black arrows) and endoderm (arrow head). Arrows indicate areas of expression. The genes are labelled with the top blast hit and unique EST identifier (e.g., Xl088m05).
Image published in: Chalmers AD et al. (2006)
Copyright © 2006. Image reproduced with permission of the Publisher, Elsevier B. V.
| Gene | Synonyms | Species | Stage(s) | Tissue |
|---|---|---|---|---|
| kirrel2.L | NEPH1 | X. laevis | Throughout NF stage 11 | marginal zone |
| upk2.S | X. laevis | Throughout NF stage 11 | animal hemisphere ectoderm animal cap animal cap outer layer | |
| ern1.S | ire1, ire1a, ire1 alpha, ire1p, LOC108701211, xIRE1 | X. laevis | Throughout NF stage 11 | animal hemisphere anterior animal cap animal cap outer layer |
| slc16a3.S | mct, mct3, mct4, slc16a3-a, slc16a3-b | X. laevis | Throughout NF stage 11 | ectoderm animal hemisphere animal cap animal cap outer layer |
| satpb.L | LOC398207, ta-2, Xwig1 | X. laevis | Throughout NF stage 11 | ectoderm animal hemisphere animal cap animal cap outer layer |
| kirrel2.L | NEPH1 | X. laevis | Throughout NF stage 14 | endoderm notochord pre-chordal neural plate gastrocoel roof plate dorsal endoderm anterior neural ridge |
| upk2.S | X. laevis | Throughout NF stage 14 | ectoderm non-neural ectoderm | |
| ern1.S | ire1, ire1a, ire1 alpha, ire1p, LOC108701211, xIRE1 | X. laevis | Throughout NF stage 14 | epidermis ectoderm non-neural ectoderm |
| slc16a3.S | mct, mct3, mct4, slc16a3-a, slc16a3-b | X. laevis | Throughout NF stage 14 | ectoderm epidermis non-neural ectoderm |
| satpb.L | LOC398207, ta-2, Xwig1 | X. laevis | Throughout NF stage 14 | epidermis non-neural ectoderm |
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