Fig S6 – Temporal synexpression and gene ontology in Clutch A PolyA+, related to Fig 4. (A) Sliding window gene ontology enrichment. Bottom: Heatmap of all genes (Fig 4) arranged by similarity. Middle: The location of all transcripts factors, blue line marks the number of transcription factors per 500 gene window. Red line marks the expected number of transcripts for any 500 gene window. Top: -log(p) chi-squared test for the association between the window position and the transcription factor density. A region that exceeds –log(p) > 5 is considered for annotation (Supplemental Experimental Procedures). (B) Somite Synexpression. Examples from the somite temporal synexpresssion group. Ranks give similarity to ckb between 34-66 hpf (Supplemental Experimental Procedures). Image source given at bottom.
Image published in: Owens ND et al. (2016)
Copyright © 2016. Image reproduced with permission of the publisher and the copyright holder. This is an Open Access article distributed under the terms of the Creative Commons Attribution License.
| Gene | Synonyms | Species | Stage(s) | Tissue |
|---|---|---|---|---|
| ckb | b-ck, ckbb, XCK1 | X. tropicalis | Throughout NF stage 28 | somite |
| myl11 | da1c, hummlc2b, LOC108701718, mlc2b, mrlc2, mylpf, SkMLC | X. tropicalis | Throughout NF stage 28 | somite muscle |
| myl1 | MLC1f, MLC1f/3f, MLC3f, Xmlc, XMLC1f, XMLC3f | X. tropicalis | Throughout NF stage 28 | somite muscle |
| tmod4 | sk-tropomodulin | X. tropicalis | Throughout NF stage 28 | somite muscle |
| actc1 | actc, actna1, cardiac actin, cardiac alpha actin, muscle actin | X. tropicalis | Throughout NF stage 28 | somite muscle |
| tpi1 | tpi | X. tropicalis | Throughout NF stage 28 | somite muscle |
| sypl2 | mg29, mitsugumin 29 | X. tropicalis | Throughout NF stage 28 | somite |
| klhl41 | kbtbd10, LOC398449 | X. tropicalis | Throughout NF stage 28 | somite |
| acta4 | ac100, act3, femoral actin, MA, muscle actin, skeletal actin | X. tropicalis | Throughout NF stage 28 | heart somite muscle |
| gpi | X. tropicalis | Throughout NF stage 28 | somite | |
| hspb1 | hsp27 | X. tropicalis | Throughout NF stage 28 | somite |
| col2a1 | col11a3, col2a1-a, col2a1-b, X-col II, xcol2a1 | X. tropicalis | Throughout NF stage 28 | heart somite muscle |
| krt19 | cytokeratin 19, krt15, krt9 | X. tropicalis | Throughout NF stage 28 | central nervous system spinal cord trigeminal nerve |
| tnnc2 | troponin C, skeletal muscle | X. tropicalis | Throughout NF stage 28 | somite muscle |
| hhatl | gup1, mboat3, oact3 | X. tropicalis | Throughout NF stage 28 | somite muscle |
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